Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 88 - 208 | 1.2e-22 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 299 |
| AciI | CCGC | 3 cut(s) | 189, 299, 467 |
| AclWI | GGATC | 1 cut(s) | 639 |
| AcsI | RAATTY | 4 cut(s) | 40, 105, 213, 723 |
| AcuI | CTGAAG | 1 cut(s) | 765 |
| AcyI | GRCGYC | 1 cut(s) | 514 |
| AgsI | TTSAA | 3 cut(s) | 251, 395, 417 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 6 cut(s) | 11, 160, 391, 617, 691, 737 |
| AluI | AGCT | 6 cut(s) | 11, 160, 391, 617, 691, 737 |
| Alw21I | GWGCWC | 1 cut(s) | 178 |
| Alw26I | GTCTC | 1 cut(s) | 548 |
| AlwI | GGATC | 1 cut(s) | 639 |
| ApeKI | GCWGC | 4 cut(s) | 100, 275, 691, 782 |
| ApoI | RAATTY | 4 cut(s) | 40, 105, 213, 723 |
| BauI | CACGAG | 1 cut(s) | 279 |
| Bbv12I | GWGCWC | 1 cut(s) | 178 |
| BbvI | GCAGC | 4 cut(s) | 112, 262, 678, 769 |
| BccI | CCATC | 2 cut(s) | 263, 429 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 89, 123 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BclI | TGATCA | 1 cut(s) | 322 |
| BcoDI | GTCTC | 1 cut(s) | 548 |
| BfaI | CTAG | 2 cut(s) | 36, 380 |
| BisI | GCNGC | 4 cut(s) | 101, 276, 692, 783 |
| BlpI | GCTNAGC | 1 cut(s) | 613 |
| BlsI | GCNGC | 4 cut(s) | 102, 277, 693, 784 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| BmiI | GGNNCC | 1 cut(s) | 358 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 2 cut(s) | 276, 694 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 613 |
| BpuEI | CTTGAG | 1 cut(s) | 184 |
| BsaHI | GRCGYC | 1 cut(s) | 514 |
| BsaJI | CCNNGG | 2 cut(s) | 360, 509 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseDI | CCNNGG | 2 cut(s) | 360, 509 |
| BseGI | GGATG | 2 cut(s) | 291, 440 |
| BseMII | CTCAG | 2 cut(s) | 162, 516 |
| BseRI | GAGGAG | 1 cut(s) | 544 |
| BseXI | GCAGC | 4 cut(s) | 112, 262, 678, 769 |
| Bsh1236I | CGCG | 1 cut(s) | 299 |
| BsiHKAI | GWGCWC | 1 cut(s) | 178 |
| BslFI | GGGAC | 2 cut(s) | 491, 679 |
| BsmAI | GTCTC | 1 cut(s) | 548 |
| BsmFI | GGGAC | 2 cut(s) | 491, 679 |
| Bsp1286I | GDGCHC | 1 cut(s) | 178 |
| Bsp143I | GATC | 2 cut(s) | 322, 631 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 613 |
| BspACI | CCGC | 3 cut(s) | 189, 299, 467 |
| BspCNI | CTCAG | 2 cut(s) | 161, 515 |
| BspFNI | CGCG | 1 cut(s) | 299 |
| BspHI | TCATGA | 1 cut(s) | 634 |
| BspLI | GGNNCC | 1 cut(s) | 358 |
| BspPI | GGATC | 1 cut(s) | 639 |
| BssECI | CCNNGG | 2 cut(s) | 360, 509 |
| BssMI | GATC | 2 cut(s) | 322, 631 |
| BssNI | GRCGYC | 1 cut(s) | 514 |
| BssSI | CACGAG | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 2 cut(s) | 360, 509 |
| Bst2BI | CACGAG | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 772 |
| BstACI | GRCGYC | 1 cut(s) | 514 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 691 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 234, 301 |
| BstDEI | CTNAG | 5 cut(s) | 148, 179, 502, 518, 613 |
| BstEII | GGTNACC | 1 cut(s) | 716 |
| BstF5I | GGATG | 2 cut(s) | 291, 440 |
| BstFNI | CGCG | 1 cut(s) | 299 |
| BstKTI | GATC | 2 cut(s) | 325, 634 |
| BstMAI | GTCTC | 1 cut(s) | 548 |
| BstMBI | GATC | 2 cut(s) | 322, 631 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 242, 383, 691 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstPI | GGTNACC | 1 cut(s) | 716 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstUI | CGCG | 1 cut(s) | 299 |
| BstV1I | GCAGC | 4 cut(s) | 112, 262, 678, 769 |
| BtsCI | GGATG | 2 cut(s) | 291, 440 |
| BtsIMutI | CAGTG | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 234, 301 |
| CciI | TCATGA | 1 cut(s) | 634 |
| CseI | GACGC | 2 cut(s) | 50, 503 |
| CviAII | CATG | 5 cut(s) | 233, 407, 635, 764, 786 |
| DdeI | CTNAG | 5 cut(s) | 148, 179, 502, 518, 613 |
| DpnI | GATC | 2 cut(s) | 324, 633 |
| DpnII | GATC | 2 cut(s) | 322, 631 |
| Eco130I | CCWWGG | 2 cut(s) | 360, 509 |
| Eco57I | CTGAAG | 1 cut(s) | 765 |
| Eco91I | GGTNACC | 1 cut(s) | 716 |
| EcoO65I | GGTNACC | 1 cut(s) | 716 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 2 cut(s) | 360, 509 |
| ErhI | CCWWGG | 2 cut(s) | 360, 509 |
| FaeI | CATG | 5 cut(s) | 236, 410, 638, 767, 789 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 375, 407 |
| FaqI | GGGAC | 2 cut(s) | 491, 679 |
| FatI | CATG | 5 cut(s) | 232, 406, 634, 763, 785 |
| FauI | CCCGC | 1 cut(s) | 292 |
| FbaI | TGATCA | 1 cut(s) | 322 |
| Fnu4HI | GCNGC | 4 cut(s) | 101, 276, 692, 783 |
| FokI | GGATG | 2 cut(s) | 298, 447 |
| Fsp4HI | GCNGC | 4 cut(s) | 101, 276, 692, 783 |
| FspBI | CTAG | 2 cut(s) | 36, 380 |
| GluI | GCNGC | 4 cut(s) | 101, 276, 692, 783 |
| HgaI | GACGC | 2 cut(s) | 50, 503 |
| Hin1I | GRCGYC | 1 cut(s) | 514 |
| Hin1II | CATG | 5 cut(s) | 236, 410, 638, 767, 789 |
| HinfI | GANTC | 8 cut(s) | 85, 119, 183, 294, 461, 565, 595, 667 |
| Hpy166II | GTNNAC | 1 cut(s) | 702 |
| Hpy188I | TCNGA | 1 cut(s) | 745 |
| Hpy188III | TCNNGA | 7 cut(s) | 110, 201, 218, 320, 448, 587, 635 |
| Hpy8I | GTNNAC | 1 cut(s) | 702 |
| HpyAV | CCTTC | 1 cut(s) | 584 |
| HpyCH4III | ACNGT | 1 cut(s) | 772 |
| HpyCH4V | TGCA | 6 cut(s) | 410, 562, 685, 711, 767, 785 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 242, 383, 691 |
| HpyF3I | CTNAG | 5 cut(s) | 148, 179, 502, 518, 613 |
| Hsp92I | GRCGYC | 1 cut(s) | 514 |
| Hsp92II | CATG | 5 cut(s) | 236, 410, 638, 767, 789 |
| Ksp22I | TGATCA | 1 cut(s) | 322 |
| Kzo9I | GATC | 2 cut(s) | 322, 631 |
| LmnI | GCTCC | 2 cut(s) | 8, 241 |
| LpnPI | CCDG | 4 cut(s) | 276, 303, 339, 433 |
| Lsp1109I | GCAGC | 4 cut(s) | 112, 262, 678, 769 |
| LweI | GCATC | 2 cut(s) | 276, 694 |
| MaeI | CTAG | 2 cut(s) | 36, 380 |
| MaeIII | GTNAC | 3 cut(s) | 62, 143, 716 |
| MalI | GATC | 2 cut(s) | 324, 633 |
| MboI | GATC | 2 cut(s) | 322, 631 |
| MfeI | CAATTG | 1 cut(s) | 535 |
| MhlI | GDGCHC | 1 cut(s) | 178 |
| MlyI | GAGTC | 2 cut(s) | 288, 661 |
| MnlI | CCTC | 8 cut(s) | 25, 106, 208, 214, 302, 565, 631, 686 |
| MseI | TTAA | 3 cut(s) | 68, 254, 261 |
| MspA1I | CMGCKG | 3 cut(s) | 189, 467, 691 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MunI | CAATTG | 1 cut(s) | 535 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MvnI | CGCG | 1 cut(s) | 299 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 242, 383, 691 |
| NdeII | GATC | 2 cut(s) | 322, 631 |
| NlaIII | CATG | 5 cut(s) | 236, 410, 638, 767, 789 |
| NlaIV | GGNNCC | 1 cut(s) | 358 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PaeI | GCATGC | 1 cut(s) | 236 |
| PagI | TCATGA | 1 cut(s) | 634 |
| PfeI | GAWTC | 6 cut(s) | 85, 119, 183, 461, 565, 595 |
| PkrI | GCNGC | 4 cut(s) | 102, 277, 693, 784 |
| PleI | GAGTC | 2 cut(s) | 288, 661 |
| PpsI | GAGTC | 2 cut(s) | 288, 661 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspEI | GGTNACC | 1 cut(s) | 716 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 1 cut(s) | 358 |
| PvuII | CAGCTG | 1 cut(s) | 691 |
| SaqAI | TTAA | 3 cut(s) | 68, 254, 261 |
| SatI | GCNGC | 4 cut(s) | 101, 276, 692, 783 |
| Sau3AI | GATC | 2 cut(s) | 322, 631 |
| SchI | GAGTC | 2 cut(s) | 288, 661 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 178 |
| SfaNI | GCATC | 2 cut(s) | 276, 694 |
| SmlI | CTYRAG | 1 cut(s) | 199 |
| SmoI | CTYRAG | 1 cut(s) | 199 |
| SphI | GCATGC | 1 cut(s) | 236 |
| SsiI | CCGC | 3 cut(s) | 189, 299, 467 |
| SspMI | CTAG | 2 cut(s) | 36, 380 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| StyI | CCWWGG | 2 cut(s) | 360, 509 |
| TaaI | ACNGT | 1 cut(s) | 772 |
| TaqI | TCGA | 2 cut(s) | 109, 586 |
| TfiI | GAWTC | 6 cut(s) | 85, 119, 183, 461, 565, 595 |
| Tru1I | TTAA | 3 cut(s) | 68, 254, 261 |
| Tru9I | TTAA | 3 cut(s) | 68, 254, 261 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| TseI | GCWGC | 4 cut(s) | 100, 275, 691, 782 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 2 cut(s) | 395, 752 |
| TspGWI | ACGGA | 2 cut(s) | 38, 718 |
| TspRI | CASTG | 1 cut(s) | 178 |
| XapI | RAATTY | 4 cut(s) | 40, 105, 213, 723 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XspI | CTAG | 2 cut(s) | 36, 380 |