Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 52 - 158 | 6.9e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 257 |
| Acc16I | TGCGCA | 1 cut(s) | 374 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 119 |
| AciI | CCGC | 1 cut(s) | 239 |
| AcsI | RAATTY | 2 cut(s) | 448, 472 |
| AfaI | GTAC | 2 cut(s) | 103, 145 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AflII | CTTAAG | 1 cut(s) | 538 |
| AgsI | TTSAA | 1 cut(s) | 388 |
| AjnI | CCWGG | 1 cut(s) | 552 |
| AluBI | AGCT | 1 cut(s) | 230 |
| AluI | AGCT | 1 cut(s) | 230 |
| Ama87I | CYCGRG | 1 cut(s) | 521 |
| ApoI | RAATTY | 2 cut(s) | 448, 472 |
| AspLEI | GCGC | 1 cut(s) | 375 |
| AsuHPI | GGTGA | 2 cut(s) | 143, 504 |
| AsuII | TTCGAA | 1 cut(s) | 280 |
| AvaI | CYCGRG | 1 cut(s) | 521 |
| BauI | CACGAG | 1 cut(s) | 570 |
| BciT130I | CCWGG | 1 cut(s) | 554 |
| BfrI | CTTAAG | 1 cut(s) | 538 |
| BglII | AGATCT | 1 cut(s) | 525 |
| BlpI | GCTNAGC | 1 cut(s) | 66 |
| Bme1390I | CCNGG | 1 cut(s) | 554 |
| BmeT110I | CYCGRG | 1 cut(s) | 521 |
| BmiI | GGNNCC | 1 cut(s) | 560 |
| BmrFI | CCNGG | 1 cut(s) | 554 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 66 |
| Bpu14I | TTCGAA | 1 cut(s) | 280 |
| BsaJI | CCNNGG | 2 cut(s) | 362, 553 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 321 |
| Bse3DI | GCAATG | 2 cut(s) | 86, 375 |
| BseBI | CCWGG | 1 cut(s) | 554 |
| BseDI | CCNNGG | 2 cut(s) | 362, 553 |
| BseGI | GGATG | 1 cut(s) | 553 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseMI | GCAATG | 2 cut(s) | 86, 375 |
| BseMII | CTCAG | 2 cut(s) | 80, 240 |
| BseNI | ACTGG | 1 cut(s) | 321 |
| BsiHKCI | CYCGRG | 1 cut(s) | 521 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsoBI | CYCGRG | 1 cut(s) | 521 |
| Bsp119I | TTCGAA | 1 cut(s) | 280 |
| Bsp143I | GATC | 1 cut(s) | 525 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 66 |
| BspACI | CCGC | 1 cut(s) | 239 |
| BspCNI | CTCAG | 2 cut(s) | 79, 239 |
| BspLI | GGNNCC | 1 cut(s) | 560 |
| BspT104I | TTCGAA | 1 cut(s) | 280 |
| BspTI | CTTAAG | 1 cut(s) | 538 |
| BsrDI | GCAATG | 2 cut(s) | 86, 375 |
| BsrI | ACTGG | 1 cut(s) | 321 |
| BssECI | CCNNGG | 2 cut(s) | 362, 553 |
| BssMI | GATC | 1 cut(s) | 525 |
| BssSI | CACGAG | 1 cut(s) | 570 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst2BI | CACGAG | 1 cut(s) | 570 |
| Bst2UI | CCWGG | 1 cut(s) | 554 |
| BstAFI | CTTAAG | 1 cut(s) | 538 |
| BstBI | TTCGAA | 1 cut(s) | 280 |
| BstC8I | GCNNGC | 1 cut(s) | 507 |
| BstDEI | CTNAG | 2 cut(s) | 66, 226 |
| BstF5I | GGATG | 1 cut(s) | 553 |
| BstHHI | GCGC | 1 cut(s) | 375 |
| BstKTI | GATC | 1 cut(s) | 528 |
| BstMBI | GATC | 1 cut(s) | 525 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 76, 236 |
| BstNI | CCWGG | 1 cut(s) | 554 |
| BstNSI | RCATGY | 3 cut(s) | 74, 336, 509 |
| BstSCI | CCNGG | 1 cut(s) | 552 |
| BstX2I | RGATCY | 1 cut(s) | 525 |
| BstYI | RGATCY | 1 cut(s) | 525 |
| BtsCI | GGATG | 1 cut(s) | 553 |
| BtsI | GCAGTG | 2 cut(s) | 368, 421 |
| BtsIMutI | CAGTG | 3 cut(s) | 328, 368, 421 |
| Cac8I | GCNNGC | 1 cut(s) | 507 |
| CfoI | GCGC | 1 cut(s) | 375 |
| Csp6I | GTAC | 2 cut(s) | 102, 144 |
| CviAII | CATG | 6 cut(s) | 71, 90, 119, 333, 431, 506 |
| CviJI | RGCY | 3 cut(s) | 123, 230, 485 |
| CviKI_1 | RGCY | 3 cut(s) | 123, 230, 485 |
| CviQI | GTAC | 2 cut(s) | 102, 144 |
| DdeI | CTNAG | 2 cut(s) | 66, 226 |
| DpnI | GATC | 1 cut(s) | 527 |
| DpnII | GATC | 1 cut(s) | 525 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco88I | CYCGRG | 1 cut(s) | 521 |
| EcoRII | CCWGG | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaeI | CATG | 6 cut(s) | 74, 93, 122, 336, 434, 509 |
| FatI | CATG | 6 cut(s) | 70, 89, 118, 332, 430, 505 |
| FokI | GGATG | 1 cut(s) | 560 |
| FspI | TGCGCA | 1 cut(s) | 374 |
| GlaI | GCGC | 1 cut(s) | 374 |
| HhaI | GCGC | 1 cut(s) | 375 |
| Hin1II | CATG | 6 cut(s) | 74, 93, 122, 336, 434, 509 |
| Hin6I | GCGC | 1 cut(s) | 373 |
| HinP1I | GCGC | 1 cut(s) | 373 |
| HincII | GTYRAC | 2 cut(s) | 221, 468 |
| HindII | GTYRAC | 2 cut(s) | 221, 468 |
| HinfI | GANTC | 2 cut(s) | 32, 314 |
| HpaI | GTTAAC | 1 cut(s) | 468 |
| HphI | GGTGA | 2 cut(s) | 143, 504 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 468 |
| Hpy188I | TCNGA | 1 cut(s) | 498 |
| Hpy188III | TCNNGA | 1 cut(s) | 582 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 468 |
| HpyAV | CCTTC | 2 cut(s) | 70, 437 |
| HpyCH4V | TGCA | 1 cut(s) | 356 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 76, 236 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 226 |
| Hsp92II | CATG | 6 cut(s) | 74, 93, 122, 336, 434, 509 |
| HspAI | GCGC | 1 cut(s) | 373 |
| KspAI | GTTAAC | 1 cut(s) | 468 |
| Kzo9I | GATC | 1 cut(s) | 525 |
| LpnPI | CCDG | 3 cut(s) | 334, 539, 566 |
| MaeIII | GTNAC | 2 cut(s) | 108, 366 |
| MalI | GATC | 1 cut(s) | 527 |
| MboI | GATC | 1 cut(s) | 525 |
| MboII | GAAGA | 2 cut(s) | 480, 570 |
| MfeI | CAATTG | 2 cut(s) | 126, 147 |
| MflI | RGATCY | 1 cut(s) | 525 |
| MluCI | AATT | 6 cut(s) | 126, 147, 258, 388, 448, 472 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MmeI | TCCRAC | 1 cut(s) | 285 |
| MnlI | CCTC | 7 cut(s) | 22, 191, 352, 358, 369, 520, 525 |
| MseI | TTAA | 3 cut(s) | 245, 467, 539 |
| MspCI | CTTAAG | 1 cut(s) | 538 |
| MspR9I | CCNGG | 1 cut(s) | 554 |
| MunI | CAATTG | 2 cut(s) | 126, 147 |
| MvaI | CCWGG | 1 cut(s) | 554 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 76, 236 |
| NdeII | GATC | 1 cut(s) | 525 |
| NlaIII | CATG | 6 cut(s) | 74, 93, 122, 336, 434, 509 |
| NlaIV | GGNNCC | 1 cut(s) | 560 |
| NmuCI | GTSAC | 1 cut(s) | 366 |
| NsbI | TGCGCA | 1 cut(s) | 374 |
| NspI | RCATGY | 3 cut(s) | 74, 336, 509 |
| NspV | TTCGAA | 1 cut(s) | 280 |
| PaeI | GCATGC | 1 cut(s) | 509 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 119 |
| PleI | GAGTC | 1 cut(s) | 26 |
| PpsI | GAGTC | 1 cut(s) | 26 |
| PsiI | TTATAA | 1 cut(s) | 257 |
| Psp6I | CCWGG | 1 cut(s) | 552 |
| PspGI | CCWGG | 1 cut(s) | 552 |
| PspN4I | GGNNCC | 1 cut(s) | 560 |
| PsuI | RGATCY | 1 cut(s) | 525 |
| RsaI | GTAC | 2 cut(s) | 103, 145 |
| RsaNI | GTAC | 2 cut(s) | 102, 144 |
| SaqAI | TTAA | 3 cut(s) | 245, 467, 539 |
| Sau3AI | GATC | 1 cut(s) | 525 |
| SchI | GAGTC | 1 cut(s) | 26 |
| ScrFI | CCNGG | 1 cut(s) | 554 |
| SetI | ASST | 8 cut(s) | 202, 214, 220, 232, 350, 361, 467, 517 |
| SfuI | TTCGAA | 1 cut(s) | 280 |
| SmlI | CTYRAG | 1 cut(s) | 538 |
| SmoI | CTYRAG | 1 cut(s) | 538 |
| SphI | GCATGC | 1 cut(s) | 509 |
| Sse9I | AATT | 6 cut(s) | 126, 147, 258, 388, 448, 472 |
| SsiI | CCGC | 1 cut(s) | 239 |
| SspI | AATATT | 1 cut(s) | 191 |
| StyD4I | CCNGG | 1 cut(s) | 552 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaqI | TCGA | 2 cut(s) | 280, 317 |
| TasI | AATT | 6 cut(s) | 126, 147, 258, 388, 448, 472 |
| TatI | WGTACW | 1 cut(s) | 143 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 3 cut(s) | 245, 467, 539 |
| Tru9I | TTAA | 3 cut(s) | 245, 467, 539 |
| TscAI | CASTG | 3 cut(s) | 328, 375, 428 |
| TseFI | GTSAC | 1 cut(s) | 366 |
| Tsp45I | GTSAC | 1 cut(s) | 366 |
| TspDTI | ATGAA | 1 cut(s) | 480 |
| TspRI | CASTG | 3 cut(s) | 328, 375, 428 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 119 |
| Vha464I | CTTAAG | 1 cut(s) | 538 |
| XapI | RAATTY | 2 cut(s) | 448, 472 |
| XceI | RCATGY | 3 cut(s) | 74, 336, 509 |