Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 468 - 633 | 4.5e-14 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1237 |
| Acc16I | TGCGCA | 1 cut(s) | 1333 |
| Acc36I | ACCTGC | 1 cut(s) | 375 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 2406 |
| AccI | GTMKAC | 1 cut(s) | 2118 |
| AciI | CCGC | 4 cut(s) | 574, 823, 2030, 2573 |
| AclWI | GGATC | 3 cut(s) | 14, 1058, 1940 |
| AcsI | RAATTY | 4 cut(s) | 75, 1221, 1456, 2206 |
| AcyI | GRCGYC | 1 cut(s) | 2407 |
| AdeI | CACNNNGTG | 1 cut(s) | 1090 |
| AfaI | GTAC | 2 cut(s) | 175, 522 |
| AfeI | AGCGCT | 2 cut(s) | 1258, 1842 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2420 |
| AflIII | ACRYGT | 1 cut(s) | 523 |
| AjnI | CCWGG | 3 cut(s) | 1261, 1549, 2048 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 704, 736, 829, 861 |
| Alw21I | GWGCWC | 4 cut(s) | 442, 905, 2152, 2383 |
| Alw26I | GTCTC | 2 cut(s) | 935, 1301 |
| AlwI | GGATC | 3 cut(s) | 14, 1058, 1940 |
| Aor51HI | AGCGCT | 2 cut(s) | 1258, 1842 |
| AoxI | GGCC | 2 cut(s) | 828, 1384 |
| ApeKI | GCWGC | 2 cut(s) | 1979, 2558 |
| ApoI | RAATTY | 4 cut(s) | 75, 1221, 1456, 2206 |
| AseI | ATTAAT | 3 cut(s) | 497, 1077, 1776 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AspLEI | GCGC | 6 cut(s) | 191, 1259, 1334, 1557, 1843, 2409 |
| AspS9I | GGNCC | 3 cut(s) | 398, 829, 1265 |
| AsuHPI | GGTGA | 3 cut(s) | 872, 1058, 2614 |
| AsuII | TTCGAA | 1 cut(s) | 73 |
| AvaII | GGWCC | 2 cut(s) | 398, 1265 |
| AxyI | CCTNAGG | 1 cut(s) | 1404 |
| BamHI | GGATCC | 1 cut(s) | 6 |
| BanI | GGYRCC | 2 cut(s) | 232, 2406 |
| BanII | GRGCYC | 1 cut(s) | 442 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 951, 983, 1147, 1179 |
| BbsI | GAAGAC | 1 cut(s) | 2123 |
| Bbv12I | GWGCWC | 4 cut(s) | 442, 905, 2152, 2383 |
| BbvCI | CCTCAGC | 1 cut(s) | 1530 |
| BbvI | GCAGC | 2 cut(s) | 1991, 2570 |
| BccI | CCATC | 3 cut(s) | 1265, 2164, 2418 |
| BciT130I | CCWGG | 3 cut(s) | 1263, 1551, 2050 |
| BclI | TGATCA | 4 cut(s) | 262, 676, 1048, 2500 |
| BcoDI | GTCTC | 2 cut(s) | 935, 1301 |
| BfaI | CTAG | 7 cut(s) | 663, 2139, 2211, 2292, 2361, 2385, 2547 |
| BfmI | CTRYAG | 4 cut(s) | 297, 1353, 1908, 1977 |
| BfoI | RGCGCY | 4 cut(s) | 192, 1260, 1844, 2410 |
| BfuAI | ACCTGC | 1 cut(s) | 375 |
| BisI | GCNGC | 2 cut(s) | 1980, 2559 |
| BlsI | GCNGC | 2 cut(s) | 1981, 2560 |
| Bme1390I | CCNGG | 3 cut(s) | 1263, 1551, 2050 |
| Bme18I | GGWCC | 2 cut(s) | 398, 1265 |
| BmgT120I | GGNCC | 3 cut(s) | 398, 829, 1265 |
| BmiI | GGNNCC | 5 cut(s) | 8, 234, 399, 2408, 2521 |
| BmrFI | CCNGG | 3 cut(s) | 1263, 1551, 2050 |
| BmrI | ACTGGG | 2 cut(s) | 979, 2094 |
| BmsI | GCATC | 6 cut(s) | 619, 1126, 1237, 1621, 1819, 1991 |
| BmuI | ACTGGG | 2 cut(s) | 979, 2094 |
| BpiI | GAAGAC | 1 cut(s) | 2123 |
| BpmI | CTGGAG | 2 cut(s) | 1245, 2328 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1530 |
| Bpu14I | TTCGAA | 1 cut(s) | 73 |
| BsaHI | GRCGYC | 1 cut(s) | 2407 |
| BsaJI | CCNNGG | 4 cut(s) | 401, 739, 1550, 1653 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2446, 2476 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2420 |
| Bse1I | ACTGG | 5 cut(s) | 149, 985, 1140, 2100, 2311 |
| Bse21I | CCTNAGG | 1 cut(s) | 1404 |
| Bse3DI | GCAATG | 4 cut(s) | 43, 761, 1485, 1935 |
| BseBI | CCWGG | 3 cut(s) | 1263, 1551, 2050 |
| BseDI | CCNNGG | 4 cut(s) | 401, 739, 1550, 1653 |
| BseGI | GGATG | 6 cut(s) | 634, 1252, 1324, 2175, 2271, 2429 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2420 |
| BseMI | GCAATG | 4 cut(s) | 43, 761, 1485, 1935 |
| BseMII | CTCAG | 7 cut(s) | 96, 534, 723, 930, 936, 1544, 2565 |
| BseNI | ACTGG | 5 cut(s) | 149, 985, 1140, 2100, 2311 |
| BseRI | GAGGAG | 3 cut(s) | 1196, 1518, 2403 |
| BseXI | GCAGC | 2 cut(s) | 1991, 2570 |
| BshFI | GGCC | 2 cut(s) | 830, 1386 |
| BshNI | GGYRCC | 2 cut(s) | 232, 2406 |
| BsiHKAI | GWGCWC | 4 cut(s) | 442, 905, 2152, 2383 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2420 |
| BsmAI | GTCTC | 2 cut(s) | 935, 1301 |
| BsmI | GAATGC | 1 cut(s) | 1192 |
| BsnI | GGCC | 2 cut(s) | 830, 1386 |
| Bsp119I | TTCGAA | 1 cut(s) | 73 |
| Bsp1286I | GDGCHC | 4 cut(s) | 442, 905, 2152, 2383 |
| Bsp1407I | TGTACA | 2 cut(s) | 173, 520 |
| Bsp19I | CCATGG | 1 cut(s) | 739 |
| BspACI | CCGC | 4 cut(s) | 574, 823, 2030, 2573 |
| BspANI | GGCC | 2 cut(s) | 830, 1386 |
| BspCNI | CTCAG | 7 cut(s) | 97, 535, 724, 931, 937, 1543, 2564 |
| BspHI | TCATGA | 1 cut(s) | 442 |
| BspLI | GGNNCC | 5 cut(s) | 8, 234, 399, 2408, 2521 |
| BspMAI | CTGCAG | 1 cut(s) | 1981 |
| BspMI | ACCTGC | 1 cut(s) | 375 |
| BspPI | GGATC | 3 cut(s) | 14, 1058, 1940 |
| BspQI | GCTCTTC | 1 cut(s) | 1209 |
| BspT104I | TTCGAA | 1 cut(s) | 73 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 2406 |
| BsrDI | GCAATG | 4 cut(s) | 43, 761, 1485, 1935 |
| BsrGI | TGTACA | 2 cut(s) | 173, 520 |
| BsrI | ACTGG | 5 cut(s) | 149, 985, 1140, 2100, 2311 |
| BssECI | CCNNGG | 4 cut(s) | 401, 739, 1550, 1653 |
| BssNI | GRCGYC | 1 cut(s) | 2407 |
| BssT1I | CCWWGG | 3 cut(s) | 401, 739, 1653 |
| Bst2UI | CCWGG | 3 cut(s) | 1263, 1551, 2050 |
| Bst4CI | ACNGT | 2 cut(s) | 782, 2234 |
| Bst6I | CTCTTC | 5 cut(s) | 693, 1038, 1209, 2452, 2533 |
| BstACI | GRCGYC | 1 cut(s) | 2407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 571 |
| BstAUI | TGTACA | 2 cut(s) | 173, 520 |
| BstBI | TTCGAA | 1 cut(s) | 73 |
| BstC8I | GCNNGC | 7 cut(s) | 221, 225, 729, 1740, 1839, 2034, 2595 |
| BstDSI | CCRYGG | 1 cut(s) | 739 |
| BstF5I | GGATG | 6 cut(s) | 634, 1252, 1324, 2175, 2271, 2429 |
| BstH2I | RGCGCY | 4 cut(s) | 192, 1260, 1844, 2410 |
| BstHHI | GCGC | 6 cut(s) | 191, 1259, 1334, 1557, 1843, 2409 |
| BstMAI | GTCTC | 2 cut(s) | 935, 1301 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 323, 571, 820, 1256, 2042 |
| BstNI | CCWGG | 3 cut(s) | 1263, 1551, 2050 |
| BstNSI | RCATGY | 4 cut(s) | 527, 731, 1742, 2036 |
| BstSCI | CCNGG | 3 cut(s) | 1261, 1549, 2048 |
| BstSFI | CTRYAG | 4 cut(s) | 297, 1353, 1908, 1977 |
| BstV1I | GCAGC | 2 cut(s) | 1991, 2570 |
| BstV2I | GAAGAC | 1 cut(s) | 2123 |
| BstX2I | RGATCY | 1 cut(s) | 6 |
| BstYI | RGATCY | 1 cut(s) | 6 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1404 |
| BsuRI | GGCC | 2 cut(s) | 830, 1386 |
| BtgI | CCRYGG | 1 cut(s) | 739 |
| BtsCI | GGATG | 6 cut(s) | 634, 1252, 1324, 2175, 2271, 2429 |
| BtsI | GCAGTG | 3 cut(s) | 312, 900, 2383 |
| BtsIMutI | CAGTG | 6 cut(s) | 258, 312, 801, 900, 2383, 2439 |
| BveI | ACCTGC | 1 cut(s) | 375 |
| Cac8I | GCNNGC | 7 cut(s) | 221, 225, 729, 1740, 1839, 2034, 2595 |
| CciI | TCATGA | 1 cut(s) | 442 |
| CfoI | GCGC | 6 cut(s) | 191, 1259, 1334, 1557, 1843, 2409 |
| Cfr13I | GGNCC | 3 cut(s) | 398, 829, 1265 |
| CseI | GACGC | 1 cut(s) | 335 |
| Csp6I | GTAC | 2 cut(s) | 174, 521 |
| CviQI | GTAC | 2 cut(s) | 174, 521 |
| DinI | GGCGCC | 1 cut(s) | 2408 |
| DraIII | CACNNNGTG | 1 cut(s) | 1090 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1237 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1237 |
| Eam1104I | CTCTTC | 5 cut(s) | 693, 1038, 1209, 2452, 2533 |
| EarI | CTCTTC | 5 cut(s) | 693, 1038, 1209, 2452, 2533 |
| Ecl136II | GAGCTC | 1 cut(s) | 440 |
| Eco130I | CCWWGG | 3 cut(s) | 401, 739, 1653 |
| Eco24I | GRGCYC | 1 cut(s) | 442 |
| Eco47I | GGWCC | 2 cut(s) | 398, 1265 |
| Eco47III | AGCGCT | 2 cut(s) | 1258, 1842 |
| Eco53kI | GAGCTC | 1 cut(s) | 440 |
| Eco81I | CCTNAGG | 1 cut(s) | 1404 |
| EcoICRI | GAGCTC | 1 cut(s) | 440 |
| EcoO109I | RGGNCCY | 2 cut(s) | 398, 829 |
| EcoRI | GAATTC | 2 cut(s) | 75, 2206 |
| EcoRII | CCWGG | 3 cut(s) | 1261, 1549, 2048 |
| EcoT14I | CCWWGG | 3 cut(s) | 401, 739, 1653 |
| EcoT22I | ATGCAT | 1 cut(s) | 2319 |
| EcoT38I | GRGCYC | 1 cut(s) | 442 |
| EgeI | GGCGCC | 1 cut(s) | 2408 |
| EheI | GGCGCC | 1 cut(s) | 2408 |
| ErhI | CCWWGG | 3 cut(s) | 401, 739, 1653 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1886, 1918 |
| FauI | CCCGC | 1 cut(s) | 567 |
| FauNDI | CATATG | 1 cut(s) | 2201 |
| FbaI | TGATCA | 4 cut(s) | 262, 676, 1048, 2500 |
| FblI | GTMKAC | 1 cut(s) | 2118 |
| Fnu4HI | GCNGC | 2 cut(s) | 1980, 2559 |
| FokI | GGATG | 6 cut(s) | 641, 1259, 1331, 2182, 2278, 2436 |
| FriOI | GRGCYC | 1 cut(s) | 442 |
| Fsp4HI | GCNGC | 2 cut(s) | 1980, 2559 |
| FspBI | CTAG | 7 cut(s) | 663, 2139, 2211, 2292, 2361, 2385, 2547 |
| FspI | TGCGCA | 1 cut(s) | 1333 |
| GlaI | GCGC | 6 cut(s) | 190, 1258, 1333, 1556, 1842, 2408 |
| GluI | GCNGC | 2 cut(s) | 1980, 2559 |
| GsuI | CTGGAG | 2 cut(s) | 1245, 2328 |
| HaeII | RGCGCY | 4 cut(s) | 192, 1260, 1844, 2410 |
| HaeIII | GGCC | 2 cut(s) | 830, 1386 |
| HgaI | GACGC | 1 cut(s) | 335 |
| HhaI | GCGC | 6 cut(s) | 191, 1259, 1334, 1557, 1843, 2409 |
| Hin1I | GRCGYC | 1 cut(s) | 2407 |
| Hin6I | GCGC | 6 cut(s) | 189, 1257, 1332, 1555, 1841, 2407 |
| HinP1I | GCGC | 6 cut(s) | 189, 1257, 1332, 1555, 1841, 2407 |
| HincII | GTYRAC | 4 cut(s) | 529, 981, 1795, 2437 |
| HindII | GTYRAC | 4 cut(s) | 529, 981, 1795, 2437 |
| HindIII | AAGCTT | 1 cut(s) | 1994 |
| HinfI | GANTC | 8 cut(s) | 41, 125, 293, 604, 642, 1399, 1421, 2009 |
| HpaI | GTTAAC | 3 cut(s) | 981, 1795, 2437 |
| HphI | GGTGA | 3 cut(s) | 872, 1058, 2614 |
| Hpy166II | GTNNAC | 7 cut(s) | 529, 549, 981, 1795, 2105, 2119, 2437 |
| Hpy8I | GTNNAC | 7 cut(s) | 529, 549, 981, 1795, 2105, 2119, 2437 |
| Hpy99I | CGWCG | 1 cut(s) | 351 |
| HpyAV | CCTTC | 8 cut(s) | 82, 820, 953, 1173, 1218, 2049, 2427, 2533 |
| HpyCH4III | ACNGT | 2 cut(s) | 782, 2234 |
| HpyCH4IV | ACGT | 5 cut(s) | 328, 582, 905, 1537, 2143 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 323, 571, 820, 1256, 2042 |
| HpySE526I | ACGT | 5 cut(s) | 328, 582, 905, 1537, 2143 |
| Hsp92I | GRCGYC | 1 cut(s) | 2407 |
| HspAI | GCGC | 6 cut(s) | 189, 1257, 1332, 1555, 1841, 2407 |
| KasI | GGCGCC | 1 cut(s) | 2406 |
| Ksp22I | TGATCA | 4 cut(s) | 262, 676, 1048, 2500 |
| KspAI | GTTAAC | 3 cut(s) | 981, 1795, 2437 |
| LguI | GCTCTTC | 1 cut(s) | 1209 |
| LmnI | GCTCC | 8 cut(s) | 437, 539, 586, 724, 1264, 2041, 2386, 2519 |
| Lsp1109I | GCAGC | 2 cut(s) | 1991, 2570 |
| LweI | GCATC | 6 cut(s) | 619, 1126, 1237, 1621, 1819, 1991 |
| MaeI | CTAG | 7 cut(s) | 663, 2139, 2211, 2292, 2361, 2385, 2547 |
| MaeII | ACGT | 5 cut(s) | 328, 582, 905, 1537, 2143 |
| MaeIII | GTNAC | 4 cut(s) | 256, 906, 1898, 2302 |
| MfeI | CAATTG | 2 cut(s) | 1013, 2122 |
| MflI | RGATCY | 1 cut(s) | 6 |
| MhlI | GDGCHC | 4 cut(s) | 442, 905, 2152, 2383 |
| Mly113I | GGCGCC | 1 cut(s) | 2407 |
| MlyI | GAGTC | 3 cut(s) | 35, 613, 2003 |
| MmeI | TCCRAC | 2 cut(s) | 702, 740 |
| Mph1103I | ATGCAT | 1 cut(s) | 2319 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MslI | CAYNNNNRTG | 2 cut(s) | 564, 1588 |
| MspR9I | CCNGG | 3 cut(s) | 1263, 1551, 2050 |
| MunI | CAATTG | 2 cut(s) | 1013, 2122 |
| Mva1269I | GAATGC | 1 cut(s) | 1192 |
| MvaI | CCWGG | 3 cut(s) | 1263, 1551, 2050 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 323, 571, 820, 1256, 2042 |
| NarI | GGCGCC | 1 cut(s) | 2407 |
| NcoI | CCATGG | 1 cut(s) | 739 |
| NdeI | CATATG | 1 cut(s) | 2201 |
| NlaIV | GGNNCC | 5 cut(s) | 8, 234, 399, 2408, 2521 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| NsbI | TGCGCA | 1 cut(s) | 1333 |
| NsiI | ATGCAT | 1 cut(s) | 2319 |
| NspI | RCATGY | 4 cut(s) | 527, 731, 1742, 2036 |
| NspV | TTCGAA | 1 cut(s) | 73 |
| PacI | TTAATTAA | 1 cut(s) | 1776 |
| PaeI | GCATGC | 3 cut(s) | 731, 1742, 2036 |
| PagI | TCATGA | 1 cut(s) | 442 |
| PciI | ACATGT | 1 cut(s) | 523 |
| PciSI | GCTCTTC | 1 cut(s) | 1209 |
| PctI | GAATGC | 1 cut(s) | 1192 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 5 cut(s) | 125, 293, 642, 1399, 1421 |
| PfoI | TCCNGGA | 1 cut(s) | 2048 |
| PkrI | GCNGC | 2 cut(s) | 1981, 2560 |
| PleI | GAGTC | 3 cut(s) | 35, 612, 2003 |
| PluTI | GGCGCC | 1 cut(s) | 2410 |
| PpsI | GAGTC | 3 cut(s) | 35, 612, 2003 |
| PpuMI | RGGWCCY | 1 cut(s) | 398 |
| PscI | ACATGT | 1 cut(s) | 523 |
| PshBI | ATTAAT | 3 cut(s) | 497, 1077, 1776 |
| Psp124BI | GAGCTC | 1 cut(s) | 442 |
| Psp5II | RGGWCCY | 1 cut(s) | 398 |
| Psp6I | CCWGG | 3 cut(s) | 1261, 1549, 2048 |
| PspGI | CCWGG | 3 cut(s) | 1261, 1549, 2048 |
| PspN4I | GGNNCC | 5 cut(s) | 8, 234, 399, 2408, 2521 |
| PspPI | GGNCC | 3 cut(s) | 398, 829, 1265 |
| PspPPI | RGGWCCY | 1 cut(s) | 398 |
| PstI | CTGCAG | 1 cut(s) | 1981 |
| PsuI | RGATCY | 1 cut(s) | 6 |
| RsaI | GTAC | 2 cut(s) | 175, 522 |
| RsaNI | GTAC | 2 cut(s) | 174, 521 |
| RseI | CAYNNNNRTG | 2 cut(s) | 564, 1588 |
| SacI | GAGCTC | 1 cut(s) | 442 |
| SapI | GCTCTTC | 1 cut(s) | 1209 |
| SatI | GCNGC | 2 cut(s) | 1980, 2559 |
| Sau96I | GGNCC | 3 cut(s) | 398, 829, 1265 |
| SchI | GAGTC | 3 cut(s) | 35, 613, 2003 |
| ScrFI | CCNGG | 3 cut(s) | 1263, 1551, 2050 |
| SduI | GDGCHC | 4 cut(s) | 442, 905, 2152, 2383 |
| SfaNI | GCATC | 6 cut(s) | 619, 1126, 1237, 1621, 1819, 1991 |
| SfcI | CTRYAG | 4 cut(s) | 297, 1353, 1908, 1977 |
| SfoI | GGCGCC | 1 cut(s) | 2408 |
| SfuI | TTCGAA | 1 cut(s) | 73 |
| SinI | GGWCC | 2 cut(s) | 398, 1265 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 564, 1588 |
| SphI | GCATGC | 3 cut(s) | 731, 1742, 2036 |
| SsiI | CCGC | 4 cut(s) | 574, 823, 2030, 2573 |
| SspDI | GGCGCC | 1 cut(s) | 2406 |
| SspI | AATATT | 2 cut(s) | 919, 1561 |
| SspMI | CTAG | 7 cut(s) | 663, 2139, 2211, 2292, 2361, 2385, 2547 |
| SstI | GAGCTC | 1 cut(s) | 442 |
| StyD4I | CCNGG | 3 cut(s) | 1261, 1549, 2048 |
| StyI | CCWWGG | 3 cut(s) | 401, 739, 1653 |
| TaaI | ACNGT | 2 cut(s) | 782, 2234 |
| TaiI | ACGT | 5 cut(s) | 331, 585, 908, 1540, 2146 |
| TaqI | TCGA | 6 cut(s) | 73, 372, 645, 1009, 1438, 2338 |
| TatI | WGTACW | 2 cut(s) | 173, 520 |
| TfiI | GAWTC | 5 cut(s) | 125, 293, 642, 1399, 1421 |
| TscAI | CASTG | 6 cut(s) | 265, 319, 801, 900, 2383, 2446 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| TseI | GCWGC | 2 cut(s) | 1979, 2558 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspGWI | ACGGA | 1 cut(s) | 692 |
| TspRI | CASTG | 6 cut(s) | 265, 319, 801, 900, 2383, 2446 |
| VpaK11BI | GGWCC | 2 cut(s) | 398, 1265 |
| VspI | ATTAAT | 3 cut(s) | 497, 1077, 1776 |
| XapI | RAATTY | 4 cut(s) | 75, 1221, 1456, 2206 |
| XbaI | TCTAGA | 1 cut(s) | 2210 |
| XceI | RCATGY | 4 cut(s) | 527, 731, 1742, 2036 |
| XmiI | GTMKAC | 1 cut(s) | 2118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 7 cut(s) | 663, 2139, 2211, 2292, 2361, 2385, 2547 |
| Zsp2I | ATGCAT | 1 cut(s) | 2319 |