ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 491 |
| AcsI | RAATTY | 1 cut(s) | 473 |
| AcyI | GRCGYC | 1 cut(s) | 488 |
| AfaI | GTAC | 6 cut(s) | 150, 361, 416, 465, 517, 560 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 562 |
| AgsI | TTSAA | 3 cut(s) | 78, 136, 286 |
| AhlI | ACTAGT | 1 cut(s) | 92 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 128, 160 |
| AluBI | AGCT | 5 cut(s) | 26, 172, 335, 569, 577 |
| AluI | AGCT | 5 cut(s) | 26, 172, 335, 569, 577 |
| Alw21I | GWGCWC | 1 cut(s) | 271 |
| Alw26I | GTCTC | 3 cut(s) | 122, 170, 226 |
| Ama87I | CYCGRG | 1 cut(s) | 36 |
| AoxI | GGCC | 2 cut(s) | 33, 553 |
| ApoI | RAATTY | 1 cut(s) | 473 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 203 |
| AspS9I | GGNCC | 2 cut(s) | 34, 43 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 36 |
| AvaII | GGWCC | 1 cut(s) | 43 |
| Bbv12I | GWGCWC | 1 cut(s) | 271 |
| BccI | CCATC | 6 cut(s) | 271, 320, 373, 425, 428, 448 |
| BcoDI | GTCTC | 3 cut(s) | 122, 170, 226 |
| BcuI | ACTAGT | 1 cut(s) | 92 |
| BfaI | CTAG | 2 cut(s) | 93, 332 |
| Bme18I | GGWCC | 1 cut(s) | 43 |
| BmeT110I | CYCGRG | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 43 |
| BmiI | GGNNCC | 2 cut(s) | 44, 67 |
| BmsI | GCATC | 1 cut(s) | 383 |
| BpuEI | CTTGAG | 1 cut(s) | 194 |
| BsaHI | GRCGYC | 1 cut(s) | 488 |
| BsaI | GGTCTC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 4 cut(s) | 37, 227, 245, 546 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 562 |
| Bse1I | ACTGG | 1 cut(s) | 556 |
| Bse3DI | GCAATG | 1 cut(s) | 498 |
| BseDI | CCNNGG | 4 cut(s) | 37, 227, 245, 546 |
| BseGI | GGATG | 3 cut(s) | 398, 420, 463 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BseMI | GCAATG | 1 cut(s) | 498 |
| BseMII | CTCAG | 1 cut(s) | 27 |
| BseNI | ACTGG | 1 cut(s) | 556 |
| BshFI | GGCC | 2 cut(s) | 35, 555 |
| BsiHKAI | GWGCWC | 1 cut(s) | 271 |
| BsiHKCI | CYCGRG | 1 cut(s) | 36 |
| BslFI | GGGAC | 1 cut(s) | 56 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BsmAI | GTCTC | 3 cut(s) | 122, 170, 226 |
| BsmFI | GGGAC | 1 cut(s) | 56 |
| BsmI | GAATGC | 2 cut(s) | 145, 240 |
| BsnI | GGCC | 2 cut(s) | 35, 555 |
| Bso31I | GGTCTC | 1 cut(s) | 122 |
| BsoBI | CYCGRG | 1 cut(s) | 36 |
| Bsp1286I | GDGCHC | 1 cut(s) | 271 |
| Bsp1407I | TGTACA | 1 cut(s) | 414 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| BspANI | GGCC | 2 cut(s) | 35, 555 |
| BspCNI | CTCAG | 1 cut(s) | 26 |
| BspLI | GGNNCC | 2 cut(s) | 44, 67 |
| BspTNI | GGTCTC | 1 cut(s) | 122 |
| BsrDI | GCAATG | 1 cut(s) | 498 |
| BsrGI | TGTACA | 1 cut(s) | 414 |
| BsrI | ACTGG | 1 cut(s) | 556 |
| BssECI | CCNNGG | 4 cut(s) | 37, 227, 245, 546 |
| BssNI | GRCGYC | 1 cut(s) | 488 |
| BssT1I | CCWWGG | 3 cut(s) | 227, 245, 546 |
| Bst4CI | ACNGT | 1 cut(s) | 196 |
| Bst6I | CTCTTC | 1 cut(s) | 303 |
| BstACI | GRCGYC | 1 cut(s) | 488 |
| BstAUI | TGTACA | 1 cut(s) | 414 |
| BstDEI | CTNAG | 2 cut(s) | 13, 570 |
| BstDSI | CCRYGG | 1 cut(s) | 546 |
| BstF5I | GGATG | 3 cut(s) | 398, 420, 463 |
| BstMAI | GTCTC | 3 cut(s) | 122, 170, 226 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 353, 509 |
| BsuRI | GGCC | 2 cut(s) | 35, 555 |
| BtgI | CCRYGG | 1 cut(s) | 546 |
| BtsCI | GGATG | 3 cut(s) | 398, 420, 463 |
| BtsI | GCAGTG | 1 cut(s) | 507 |
| BtsIMutI | CAGTG | 1 cut(s) | 507 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 43 |
| Csp6I | GTAC | 6 cut(s) | 149, 360, 415, 464, 516, 559 |
| CviAII | CATG | 4 cut(s) | 186, 296, 353, 547 |
| CviJI | RGCY | 9 cut(s) | 26, 35, 68, 172, 214, 335, 555, 569, 577 |
| CviKI_1 | RGCY | 9 cut(s) | 26, 35, 68, 172, 214, 335, 555, 569, 577 |
| CviQI | GTAC | 6 cut(s) | 149, 360, 415, 464, 516, 559 |
| DdeI | CTNAG | 2 cut(s) | 13, 570 |
| DraI | TTTAAA | 1 cut(s) | 102 |
| Eam1104I | CTCTTC | 1 cut(s) | 303 |
| EarI | CTCTTC | 1 cut(s) | 303 |
| Eco130I | CCWWGG | 3 cut(s) | 227, 245, 546 |
| Eco31I | GGTCTC | 1 cut(s) | 122 |
| Eco47I | GGWCC | 1 cut(s) | 43 |
| Eco88I | CYCGRG | 1 cut(s) | 36 |
| EcoT14I | CCWWGG | 3 cut(s) | 227, 245, 546 |
| EcoT22I | ATGCAT | 1 cut(s) | 145 |
| ErhI | CCWWGG | 3 cut(s) | 227, 245, 546 |
| FaeI | CATG | 4 cut(s) | 189, 299, 356, 550 |
| FaqI | GGGAC | 1 cut(s) | 56 |
| FatI | CATG | 4 cut(s) | 185, 295, 352, 546 |
| FokI | GGATG | 3 cut(s) | 405, 407, 470 |
| FspBI | CTAG | 2 cut(s) | 93, 332 |
| HaeIII | GGCC | 2 cut(s) | 35, 555 |
| Hin1I | GRCGYC | 1 cut(s) | 488 |
| Hin1II | CATG | 4 cut(s) | 189, 299, 356, 550 |
| HindIII | AAGCTT | 2 cut(s) | 24, 575 |
| HinfI | GANTC | 3 cut(s) | 6, 160, 182 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 2 cut(s) | 260, 417 |
| Hpy188I | TCNGA | 1 cut(s) | 16 |
| Hpy8I | GTNNAC | 2 cut(s) | 260, 417 |
| HpyAV | CCTTC | 2 cut(s) | 225, 545 |
| HpyCH4III | ACNGT | 1 cut(s) | 196 |
| HpyCH4IV | ACGT | 1 cut(s) | 488 |
| HpyCH4V | TGCA | 2 cut(s) | 143, 396 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 353, 509 |
| HpyF3I | CTNAG | 2 cut(s) | 13, 570 |
| HpySE526I | ACGT | 1 cut(s) | 488 |
| Hsp92I | GRCGYC | 1 cut(s) | 488 |
| Hsp92II | CATG | 4 cut(s) | 189, 299, 356, 550 |
| LmnI | GCTCC | 3 cut(s) | 65, 382, 508 |
| LpnPI | CCDG | 4 cut(s) | 36, 342, 414, 569 |
| LweI | GCATC | 1 cut(s) | 383 |
| MaeI | CTAG | 2 cut(s) | 93, 332 |
| MaeII | ACGT | 1 cut(s) | 488 |
| MaeIII | GTNAC | 1 cut(s) | 88 |
| MboII | GAAGA | 4 cut(s) | 29, 32, 148, 320 |
| MhlI | GDGCHC | 1 cut(s) | 271 |
| MluCI | AATT | 6 cut(s) | 154, 199, 222, 253, 408, 473 |
| MlyI | GAGTC | 1 cut(s) | 154 |
| MnlI | CCTC | 4 cut(s) | 22, 25, 32, 556 |
| Mph1103I | ATGCAT | 1 cut(s) | 145 |
| MroXI | GAANNNNTTC | 1 cut(s) | 203 |
| MseI | TTAA | 2 cut(s) | 101, 251 |
| MslI | CAYNNNNRTG | 1 cut(s) | 367 |
| Mva1269I | GAATGC | 2 cut(s) | 145, 240 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 353, 509 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NlaIII | CATG | 4 cut(s) | 189, 299, 356, 550 |
| NlaIV | GGNNCC | 2 cut(s) | 44, 67 |
| NsiI | ATGCAT | 1 cut(s) | 145 |
| PctI | GAATGC | 2 cut(s) | 145, 240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 203 |
| PfeI | GAWTC | 2 cut(s) | 6, 182 |
| PleI | GAGTC | 1 cut(s) | 154 |
| PpsI | GAGTC | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 2 cut(s) | 44, 67 |
| PspPI | GGNCC | 2 cut(s) | 34, 43 |
| RsaI | GTAC | 6 cut(s) | 150, 361, 416, 465, 517, 560 |
| RsaNI | GTAC | 6 cut(s) | 149, 360, 415, 464, 516, 559 |
| RseI | CAYNNNNRTG | 1 cut(s) | 367 |
| SaqAI | TTAA | 2 cut(s) | 101, 251 |
| Sau96I | GGNCC | 2 cut(s) | 34, 43 |
| SchI | GAGTC | 1 cut(s) | 154 |
| SduI | GDGCHC | 1 cut(s) | 271 |
| SetI | ASST | 9 cut(s) | 14, 28, 134, 174, 321, 337, 491, 571, 579 |
| SfaNI | GCATC | 1 cut(s) | 383 |
| SinI | GGWCC | 1 cut(s) | 43 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 367 |
| SmlI | CTYRAG | 1 cut(s) | 173 |
| SmoI | CTYRAG | 1 cut(s) | 173 |
| SpeI | ACTAGT | 1 cut(s) | 92 |
| Sse9I | AATT | 6 cut(s) | 154, 199, 222, 253, 408, 473 |
| SspMI | CTAG | 2 cut(s) | 93, 332 |
| StyI | CCWWGG | 3 cut(s) | 227, 245, 546 |
| TaaI | ACNGT | 1 cut(s) | 196 |
| TaiI | ACGT | 1 cut(s) | 491 |
| TasI | AATT | 6 cut(s) | 154, 199, 222, 253, 408, 473 |
| TatI | WGTACW | 2 cut(s) | 414, 463 |
| TfiI | GAWTC | 2 cut(s) | 6, 182 |
| Tru1I | TTAA | 2 cut(s) | 101, 251 |
| Tru9I | TTAA | 2 cut(s) | 101, 251 |
| TscAI | CASTG | 1 cut(s) | 514 |
| TspDTI | ATGAA | 4 cut(s) | 174, 420, 438, 474 |
| TspRI | CASTG | 1 cut(s) | 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 43 |
| XapI | RAATTY | 1 cut(s) | 473 |
| XmnI | GAANNNNTTC | 1 cut(s) | 203 |
| XspI | CTAG | 2 cut(s) | 93, 332 |
| ZraI | GACGTC | 1 cut(s) | 489 |
| Zsp2I | ATGCAT | 1 cut(s) | 145 |