ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 27, 1977 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1851 |
| AatII | GACGTC | 1 cut(s) | 1855 |
| AccB1I | GGYRCC | 2 cut(s) | 1029, 1369 |
| AccI | GTMKAC | 1 cut(s) | 1843 |
| AccII | CGCG | 1 cut(s) | 1849 |
| AciI | CCGC | 3 cut(s) | 293, 1441, 1847 |
| AclWI | GGATC | 2 cut(s) | 1910, 2204 |
| AcoI | YGGCCR | 1 cut(s) | 700 |
| AcsI | RAATTY | 6 cut(s) | 652, 670, 775, 1071, 1397, 1731 |
| AcuI | CTGAAG | 2 cut(s) | 149, 943 |
| AcyI | GRCGYC | 1 cut(s) | 1852 |
| AfaI | GTAC | 2 cut(s) | 815, 2172 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1279, 1895, 1896 |
| AflII | CTTAAG | 1 cut(s) | 1130 |
| AjnI | CCWGG | 1 cut(s) | 2010 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 98, 130, 1009, 1041, 1929, 1961 |
| AluBI | AGCT | 8 cut(s) | 20, 866, 1321, 1571, 1630, 1766, 1961, 2264 |
| AluI | AGCT | 8 cut(s) | 20, 866, 1321, 1571, 1630, 1766, 1961, 2264 |
| Alw21I | GWGCWC | 1 cut(s) | 826 |
| Alw26I | GTCTC | 7 cut(s) | 156, 180, 362, 463, 729, 938, 2313 |
| AlwI | GGATC | 2 cut(s) | 1910, 2204 |
| Ama87I | CYCGRG | 1 cut(s) | 846 |
| AoxI | GGCC | 2 cut(s) | 700, 995 |
| ApeKI | GCWGC | 2 cut(s) | 1523, 1763 |
| ApoI | RAATTY | 6 cut(s) | 652, 670, 775, 1071, 1397, 1731 |
| AseI | ATTAAT | 2 cut(s) | 1221, 1911 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 516, 1541 |
| AspLEI | GCGC | 1 cut(s) | 1925 |
| AspS9I | GGNCC | 4 cut(s) | 61, 996, 1155, 1270 |
| AsuHPI | GGTGA | 3 cut(s) | 241, 488, 1730 |
| AvaI | CYCGRG | 1 cut(s) | 846 |
| AvaII | GGWCC | 3 cut(s) | 61, 1155, 1270 |
| BalI | TGGCCA | 1 cut(s) | 702 |
| BanI | GGYRCC | 2 cut(s) | 1029, 1369 |
| BbsI | GAAGAC | 2 cut(s) | 1296, 2345 |
| Bbv12I | GWGCWC | 1 cut(s) | 826 |
| BbvI | GCAGC | 2 cut(s) | 1510, 1775 |
| BccI | CCATC | 1 cut(s) | 1273 |
| BceAI | ACGGC | 3 cut(s) | 1017, 1936, 2114 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 740, 774 |
| BciT130I | CCWGG | 1 cut(s) | 2012 |
| BcoDI | GTCTC | 7 cut(s) | 156, 180, 362, 463, 729, 938, 2313 |
| BfoI | RGCGCY | 1 cut(s) | 1926 |
| BfrI | CTTAAG | 1 cut(s) | 1130 |
| BglII | AGATCT | 1 cut(s) | 1807 |
| BisI | GCNGC | 2 cut(s) | 1524, 1764 |
| BlsI | GCNGC | 2 cut(s) | 1525, 1765 |
| Bme1390I | CCNGG | 1 cut(s) | 2012 |
| Bme18I | GGWCC | 3 cut(s) | 61, 1155, 1270 |
| BmeT110I | CYCGRG | 1 cut(s) | 846 |
| BmgT120I | GGNCC | 4 cut(s) | 61, 996, 1155, 1270 |
| BmiI | GGNNCC | 5 cut(s) | 594, 1031, 1157, 1272, 1371 |
| BmrFI | CCNGG | 1 cut(s) | 2012 |
| BmsI | GCATC | 4 cut(s) | 170, 1324, 1463, 2245 |
| BpiI | GAAGAC | 2 cut(s) | 1296, 2345 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1329 |
| BpuEI | CTTGAG | 3 cut(s) | 711, 1151, 1160 |
| BsaAI | YACGTR | 1 cut(s) | 1814 |
| BsaHI | GRCGYC | 1 cut(s) | 1852 |
| BsaJI | CCNNGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 577, 607 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1279, 1895, 1896 |
| Bse1I | ACTGG | 1 cut(s) | 1106 |
| Bse3DI | GCAATG | 1 cut(s) | 386 |
| BseBI | CCWGG | 1 cut(s) | 2012 |
| BseDI | CCNNGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| BseGI | GGATG | 3 cut(s) | 909, 1196, 1339 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1279, 1895, 1896 |
| BseMI | GCAATG | 1 cut(s) | 386 |
| BseMII | CTCAG | 4 cut(s) | 45, 249, 535, 1761 |
| BseNI | ACTGG | 1 cut(s) | 1106 |
| BseRI | GAGGAG | 4 cut(s) | 168, 1197, 1633, 2301 |
| BseXI | GCAGC | 2 cut(s) | 1510, 1775 |
| BseYI | CCCAGC | 2 cut(s) | 926, 1626 |
| Bsh1236I | CGCG | 1 cut(s) | 1849 |
| BshFI | GGCC | 2 cut(s) | 702, 997 |
| BshNI | GGYRCC | 2 cut(s) | 1029, 1369 |
| BsiHKAI | GWGCWC | 1 cut(s) | 826 |
| BsiHKCI | CYCGRG | 1 cut(s) | 846 |
| BslFI | GGGAC | 4 cut(s) | 287, 1140, 1141, 1608 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1279, 1895, 1896 |
| BsmAI | GTCTC | 7 cut(s) | 156, 180, 362, 463, 729, 938, 2313 |
| BsmFI | GGGAC | 4 cut(s) | 287, 1140, 1141, 1608 |
| BsmI | GAATGC | 1 cut(s) | 1882 |
| BsnI | GGCC | 2 cut(s) | 702, 997 |
| BsoBI | CYCGRG | 1 cut(s) | 846 |
| Bsp1286I | GDGCHC | 1 cut(s) | 826 |
| Bsp143I | GATC | 3 cut(s) | 1807, 1902, 2196 |
| Bsp19I | CCATGG | 1 cut(s) | 1373 |
| BspACI | CCGC | 3 cut(s) | 293, 1441, 1847 |
| BspANI | GGCC | 2 cut(s) | 702, 997 |
| BspCNI | CTCAG | 4 cut(s) | 44, 248, 534, 1760 |
| BspFNI | CGCG | 1 cut(s) | 1849 |
| BspHI | TCATGA | 3 cut(s) | 364, 666, 1585 |
| BspLI | GGNNCC | 5 cut(s) | 594, 1031, 1157, 1272, 1371 |
| BspPI | GGATC | 2 cut(s) | 1910, 2204 |
| BspT107I | GGYRCC | 2 cut(s) | 1029, 1369 |
| BspTI | CTTAAG | 1 cut(s) | 1130 |
| BsrDI | GCAATG | 1 cut(s) | 386 |
| BsrI | ACTGG | 1 cut(s) | 1106 |
| BssECI | CCNNGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| BssMI | GATC | 3 cut(s) | 1807, 1902, 2196 |
| BssNI | GRCGYC | 1 cut(s) | 1852 |
| BssT1I | CCWWGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| Bst2UI | CCWGG | 1 cut(s) | 2012 |
| Bst4CI | ACNGT | 3 cut(s) | 1663, 2122, 2361 |
| Bst6I | CTCTTC | 3 cut(s) | 423, 507, 1932 |
| BstACI | GRCGYC | 1 cut(s) | 1852 |
| BstAFI | CTTAAG | 1 cut(s) | 1130 |
| BstBAI | YACGTR | 1 cut(s) | 1814 |
| BstC8I | GCNNGC | 3 cut(s) | 1103, 1425, 1683 |
| BstDEI | CTNAG | 5 cut(s) | 31, 235, 521, 1329, 1747 |
| BstDSI | CCRYGG | 1 cut(s) | 1373 |
| BstEII | GGTNACC | 2 cut(s) | 229, 476 |
| BstF5I | GGATG | 3 cut(s) | 909, 1196, 1339 |
| BstFNI | CGCG | 1 cut(s) | 1849 |
| BstH2I | RGCGCY | 1 cut(s) | 1926 |
| BstHHI | GCGC | 1 cut(s) | 1925 |
| BstKTI | GATC | 3 cut(s) | 1810, 1905, 2199 |
| BstMAI | GTCTC | 7 cut(s) | 156, 180, 362, 463, 729, 938, 2313 |
| BstMBI | GATC | 3 cut(s) | 1807, 1902, 2196 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 290, 1334 |
| BstNI | CCWGG | 1 cut(s) | 2012 |
| BstNSI | RCATGY | 4 cut(s) | 191, 344, 1105, 1685 |
| BstPI | GGTNACC | 2 cut(s) | 229, 476 |
| BstSCI | CCNGG | 1 cut(s) | 2010 |
| BstSNI | TACGTA | 1 cut(s) | 1814 |
| BstUI | CGCG | 1 cut(s) | 1849 |
| BstV1I | GCAGC | 2 cut(s) | 1510, 1775 |
| BstV2I | GAAGAC | 2 cut(s) | 1296, 2345 |
| BstX2I | RGATCY | 2 cut(s) | 1807, 2196 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1267 |
| BstYI | RGATCY | 2 cut(s) | 1807, 2196 |
| BsuRI | GGCC | 2 cut(s) | 702, 997 |
| BtgI | CCRYGG | 1 cut(s) | 1373 |
| BtsCI | GGATG | 3 cut(s) | 909, 1196, 1339 |
| Cac8I | GCNNGC | 3 cut(s) | 1103, 1425, 1683 |
| CciI | TCATGA | 3 cut(s) | 364, 666, 1585 |
| CfoI | GCGC | 1 cut(s) | 1925 |
| Cfr13I | GGNCC | 4 cut(s) | 61, 996, 1155, 1270 |
| Csp6I | GTAC | 2 cut(s) | 814, 2171 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2279, 2314 |
| CviQI | GTAC | 2 cut(s) | 814, 2171 |
| DdeI | CTNAG | 5 cut(s) | 31, 235, 521, 1329, 1747 |
| DpnI | GATC | 3 cut(s) | 1809, 1904, 2198 |
| DpnII | GATC | 3 cut(s) | 1807, 1902, 2196 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1851 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1851 |
| EaeI | YGGCCR | 1 cut(s) | 700 |
| Eam1104I | CTCTTC | 3 cut(s) | 423, 507, 1932 |
| EarI | CTCTTC | 3 cut(s) | 423, 507, 1932 |
| Eco105I | TACGTA | 1 cut(s) | 1814 |
| Eco130I | CCWWGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| Eco47I | GGWCC | 3 cut(s) | 61, 1155, 1270 |
| Eco57I | CTGAAG | 2 cut(s) | 149, 943 |
| Eco88I | CYCGRG | 1 cut(s) | 846 |
| Eco91I | GGTNACC | 2 cut(s) | 229, 476 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1155 |
| EcoO65I | GGTNACC | 2 cut(s) | 229, 476 |
| EcoRI | GAATTC | 1 cut(s) | 1071 |
| EcoRII | CCWGG | 1 cut(s) | 2010 |
| EcoT14I | CCWWGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| EcoT22I | ATGCAT | 2 cut(s) | 753, 1794 |
| ErhI | CCWWGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| FaqI | GGGAC | 4 cut(s) | 287, 1140, 1141, 1608 |
| FauI | CCCGC | 1 cut(s) | 1434 |
| FauNDI | CATATG | 2 cut(s) | 747, 1788 |
| FblI | GTMKAC | 1 cut(s) | 1843 |
| Fnu4HI | GCNGC | 2 cut(s) | 1524, 1764 |
| FokI | GGATG | 3 cut(s) | 916, 1203, 1346 |
| Fsp4HI | GCNGC | 2 cut(s) | 1524, 1764 |
| GlaI | GCGC | 1 cut(s) | 1924 |
| GluI | GCNGC | 2 cut(s) | 1524, 1764 |
| GsaI | CCCAGC | 2 cut(s) | 930, 1630 |
| HaeII | RGCGCY | 1 cut(s) | 1926 |
| HaeIII | GGCC | 2 cut(s) | 702, 997 |
| HhaI | GCGC | 1 cut(s) | 1925 |
| Hin1I | GRCGYC | 1 cut(s) | 1852 |
| Hin6I | GCGC | 1 cut(s) | 1923 |
| HinP1I | GCGC | 1 cut(s) | 1923 |
| HinfI | GANTC | 9 cut(s) | 71, 133, 257, 643, 931, 1144, 1537, 1621, 2111 |
| HphI | GGTGA | 3 cut(s) | 241, 488, 1730 |
| Hpy166II | GTNNAC | 3 cut(s) | 61, 874, 1844 |
| Hpy188I | TCNGA | 6 cut(s) | 129, 217, 238, 1700, 1918, 2287 |
| Hpy8I | GTNNAC | 3 cut(s) | 61, 874, 1844 |
| Hpy99I | CGWCG | 2 cut(s) | 762, 1854 |
| HpyAV | CCTTC | 7 cut(s) | 364, 606, 1109, 1368, 1426, 2154, 2231 |
| HpyCH4III | ACNGT | 3 cut(s) | 1663, 2122, 2361 |
| HpyCH4IV | ACGT | 2 cut(s) | 1813, 1852 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 290, 1334 |
| HpyF3I | CTNAG | 5 cut(s) | 31, 235, 521, 1329, 1747 |
| HpySE526I | ACGT | 2 cut(s) | 1813, 1852 |
| Hsp92I | GRCGYC | 1 cut(s) | 1852 |
| HspAI | GCGC | 1 cut(s) | 1923 |
| Kzo9I | GATC | 3 cut(s) | 1807, 1902, 2196 |
| LmnI | GCTCC | 6 cut(s) | 598, 808, 829, 1576, 1958, 2287 |
| Lsp1109I | GCAGC | 2 cut(s) | 1510, 1775 |
| LweI | GCATC | 4 cut(s) | 170, 1324, 1463, 2245 |
| MaeII | ACGT | 2 cut(s) | 1813, 1852 |
| MaeIII | GTNAC | 7 cut(s) | 229, 266, 476, 1034, 1463, 1475, 1736 |
| MalI | GATC | 3 cut(s) | 1809, 1904, 2198 |
| MboI | GATC | 3 cut(s) | 1807, 1902, 2196 |
| MfeI | CAATTG | 1 cut(s) | 557 |
| MflI | RGATCY | 2 cut(s) | 1807, 2196 |
| MhlI | GDGCHC | 1 cut(s) | 826 |
| MlsI | TGGCCA | 1 cut(s) | 702 |
| MluNI | TGGCCA | 1 cut(s) | 702 |
| MlyI | GAGTC | 4 cut(s) | 65, 251, 940, 1630 |
| MmeI | TCCRAC | 3 cut(s) | 881, 961, 2265 |
| Mox20I | TGGCCA | 1 cut(s) | 702 |
| Mph1103I | ATGCAT | 2 cut(s) | 753, 1794 |
| MroXI | GAANNNNTTC | 2 cut(s) | 516, 1541 |
| MscI | TGGCCA | 1 cut(s) | 702 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1265 |
| Msp20I | TGGCCA | 1 cut(s) | 702 |
| MspCI | CTTAAG | 1 cut(s) | 1130 |
| MspR9I | CCNGG | 1 cut(s) | 2012 |
| MunI | CAATTG | 1 cut(s) | 557 |
| Mva1269I | GAATGC | 1 cut(s) | 1882 |
| MvaI | CCWGG | 1 cut(s) | 2012 |
| MvnI | CGCG | 1 cut(s) | 1849 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 290, 1334 |
| NcoI | CCATGG | 1 cut(s) | 1373 |
| NdeI | CATATG | 2 cut(s) | 747, 1788 |
| NdeII | GATC | 3 cut(s) | 1807, 1902, 2196 |
| NlaIV | GGNNCC | 5 cut(s) | 594, 1031, 1157, 1272, 1371 |
| NmuCI | GTSAC | 6 cut(s) | 229, 266, 476, 1463, 1475, 1736 |
| NsiI | ATGCAT | 2 cut(s) | 753, 1794 |
| NspI | RCATGY | 4 cut(s) | 191, 344, 1105, 1685 |
| PaeI | GCATGC | 2 cut(s) | 1105, 1685 |
| PaeR7I | CTCGAG | 1 cut(s) | 846 |
| PagI | TCATGA | 3 cut(s) | 364, 666, 1585 |
| PctI | GAATGC | 1 cut(s) | 1882 |
| PdmI | GAANNNNTTC | 2 cut(s) | 516, 1541 |
| PfeI | GAWTC | 5 cut(s) | 133, 643, 1144, 1537, 2111 |
| PkrI | GCNGC | 2 cut(s) | 1525, 1765 |
| PleI | GAGTC | 4 cut(s) | 65, 251, 939, 1629 |
| PpsI | GAGTC | 4 cut(s) | 65, 251, 939, 1629 |
| Ppu21I | YACGTR | 1 cut(s) | 1814 |
| PpuMI | RGGWCCY | 1 cut(s) | 1155 |
| PshBI | ATTAAT | 2 cut(s) | 1221, 1911 |
| PsiI | TTATAA | 2 cut(s) | 27, 1977 |
| Psp5II | RGGWCCY | 1 cut(s) | 1155 |
| Psp6I | CCWGG | 1 cut(s) | 2010 |
| PspEI | GGTNACC | 2 cut(s) | 229, 476 |
| PspFI | CCCAGC | 2 cut(s) | 926, 1626 |
| PspGI | CCWGG | 1 cut(s) | 2010 |
| PspN4I | GGNNCC | 5 cut(s) | 594, 1031, 1157, 1272, 1371 |
| PspPI | GGNCC | 4 cut(s) | 61, 996, 1155, 1270 |
| PspPPI | RGGWCCY | 1 cut(s) | 1155 |
| PspXI | VCTCGAGB | 1 cut(s) | 846 |
| PsuI | RGATCY | 2 cut(s) | 1807, 2196 |
| RsaI | GTAC | 2 cut(s) | 815, 2172 |
| RsaNI | GTAC | 2 cut(s) | 814, 2171 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1265 |
| SatI | GCNGC | 2 cut(s) | 1524, 1764 |
| Sau3AI | GATC | 3 cut(s) | 1807, 1902, 2196 |
| Sau96I | GGNCC | 4 cut(s) | 61, 996, 1155, 1270 |
| SchI | GAGTC | 4 cut(s) | 65, 251, 940, 1630 |
| ScrFI | CCNGG | 1 cut(s) | 2012 |
| SduI | GDGCHC | 1 cut(s) | 826 |
| SfaNI | GCATC | 4 cut(s) | 170, 1324, 1463, 2245 |
| Sfr274I | CTCGAG | 1 cut(s) | 846 |
| SinI | GGWCC | 3 cut(s) | 61, 1155, 1270 |
| SlaI | CTCGAG | 1 cut(s) | 846 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1265 |
| SmlI | CTYRAG | 5 cut(s) | 726, 846, 1130, 1139, 1166 |
| SmoI | CTYRAG | 5 cut(s) | 726, 846, 1130, 1139, 1166 |
| SnaBI | TACGTA | 1 cut(s) | 1814 |
| SphI | GCATGC | 2 cut(s) | 1105, 1685 |
| SsiI | CCGC | 3 cut(s) | 293, 1441, 1847 |
| SspI | AATATT | 1 cut(s) | 2134 |
| StyD4I | CCNGG | 1 cut(s) | 2010 |
| StyI | CCWWGG | 5 cut(s) | 53, 303, 526, 1373, 2156 |
| TaaI | ACNGT | 3 cut(s) | 1663, 2122, 2361 |
| TaiI | ACGT | 2 cut(s) | 1816, 1855 |
| TaqI | TCGA | 6 cut(s) | 145, 760, 847, 896, 1411, 2167 |
| TatI | WGTACW | 2 cut(s) | 813, 2170 |
| TfiI | GAWTC | 5 cut(s) | 133, 643, 1144, 1537, 2111 |
| TseFI | GTSAC | 6 cut(s) | 229, 266, 476, 1463, 1475, 1736 |
| TseI | GCWGC | 2 cut(s) | 1523, 1763 |
| Tsp45I | GTSAC | 6 cut(s) | 229, 266, 476, 1463, 1475, 1736 |
| Vha464I | CTTAAG | 1 cut(s) | 1130 |
| VpaK11BI | GGWCC | 3 cut(s) | 61, 1155, 1270 |
| VspI | ATTAAT | 2 cut(s) | 1221, 1911 |
| XapI | RAATTY | 6 cut(s) | 652, 670, 775, 1071, 1397, 1731 |
| XbaI | TCTAGA | 1 cut(s) | 1313 |
| XceI | RCATGY | 4 cut(s) | 191, 344, 1105, 1685 |
| XhoI | CTCGAG | 1 cut(s) | 846 |
| XmiI | GTMKAC | 1 cut(s) | 1843 |
| XmnI | GAANNNNTTC | 2 cut(s) | 516, 1541 |
| ZraI | GACGTC | 1 cut(s) | 1853 |
| Zsp2I | ATGCAT | 2 cut(s) | 753, 1794 |