ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 734 |
| AciI | CCGC | 1 cut(s) | 125 |
| AclWI | GGATC | 1 cut(s) | 754 |
| AcoI | YGGCCR | 1 cut(s) | 122 |
| AcsI | RAATTY | 3 cut(s) | 100, 438, 736 |
| AcvI | CACGTG | 1 cut(s) | 54 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 54, 265, 478, 481, 814 |
| AflIII | ACRYGT | 1 cut(s) | 51 |
| AgsI | TTSAA | 7 cut(s) | 134, 245, 264, 431, 662, 695, 896 |
| AhlI | ACTAGT | 1 cut(s) | 745 |
| AjnI | CCWGG | 2 cut(s) | 249, 862 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 91, 123 |
| AluBI | AGCT | 7 cut(s) | 155, 326, 331, 338, 545, 813, 842 |
| AluI | AGCT | 7 cut(s) | 155, 326, 331, 338, 545, 813, 842 |
| Alw21I | GWGCWC | 1 cut(s) | 8 |
| Alw26I | GTCTC | 3 cut(s) | 26, 607, 639 |
| Alw44I | GTGCAC | 1 cut(s) | 4 |
| AlwI | GGATC | 1 cut(s) | 754 |
| AoxI | GGCC | 3 cut(s) | 40, 122, 866 |
| ApaLI | GTGCAC | 1 cut(s) | 4 |
| ApeKI | GCWGC | 2 cut(s) | 323, 485 |
| ApoI | RAATTY | 3 cut(s) | 100, 438, 736 |
| AspLEI | GCGC | 1 cut(s) | 234 |
| AspS9I | GGNCC | 3 cut(s) | 283, 452, 866 |
| AsuHPI | GGTGA | 2 cut(s) | 581, 769 |
| AvaII | GGWCC | 2 cut(s) | 283, 452 |
| BaeGI | GKGCMC | 2 cut(s) | 8, 862 |
| BanII | GRGCYC | 1 cut(s) | 94 |
| BauI | CACGAG | 1 cut(s) | 920 |
| BbrPI | CACGTG | 1 cut(s) | 54 |
| Bbv12I | GWGCWC | 1 cut(s) | 8 |
| BbvI | GCAGC | 2 cut(s) | 335, 497 |
| BccI | CCATC | 5 cut(s) | 416, 549, 560, 842, 866 |
| BciT130I | CCWGG | 2 cut(s) | 251, 864 |
| BclI | TGATCA | 1 cut(s) | 600 |
| BcoDI | GTCTC | 3 cut(s) | 26, 607, 639 |
| BcuI | ACTAGT | 1 cut(s) | 745 |
| BfaI | CTAG | 3 cut(s) | 408, 546, 746 |
| BisI | GCNGC | 3 cut(s) | 125, 324, 486 |
| BlpI | GCTNAGC | 1 cut(s) | 327 |
| BlsI | GCNGC | 3 cut(s) | 126, 325, 487 |
| Bme1390I | CCNGG | 2 cut(s) | 251, 864 |
| Bme18I | GGWCC | 2 cut(s) | 283, 452 |
| BmgT120I | GGNCC | 3 cut(s) | 283, 452, 866 |
| BmiI | GGNNCC | 2 cut(s) | 284, 453 |
| BmrFI | CCNGG | 2 cut(s) | 251, 864 |
| Bpu10I | CCTNAGC | 2 cut(s) | 447, 809 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 327 |
| BsaAI | YACGTR | 1 cut(s) | 54 |
| BsaBI | GATNNNNATC | 1 cut(s) | 387 |
| BsaJI | CCNNGG | 2 cut(s) | 862, 863 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 54, 265, 478, 481, 814 |
| Bse1I | ACTGG | 1 cut(s) | 365 |
| Bse3DI | GCAATG | 2 cut(s) | 204, 655 |
| Bse8I | GATNNNNATC | 1 cut(s) | 387 |
| BseBI | CCWGG | 2 cut(s) | 251, 864 |
| BseDI | CCNNGG | 2 cut(s) | 862, 863 |
| BseGI | GGATG | 4 cut(s) | 427, 581, 853, 890 |
| BseJI | GATNNNNATC | 1 cut(s) | 387 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 54, 265, 478, 481, 814 |
| BseMI | GCAATG | 2 cut(s) | 204, 655 |
| BseMII | CTCAG | 5 cut(s) | 191, 312, 461, 473, 696 |
| BseNI | ACTGG | 1 cut(s) | 365 |
| BseRI | GAGGAG | 2 cut(s) | 494, 833 |
| BseSI | GKGCMC | 2 cut(s) | 8, 862 |
| BseXI | GCAGC | 2 cut(s) | 335, 497 |
| BshFI | GGCC | 3 cut(s) | 42, 124, 868 |
| BsiHKAI | GWGCWC | 1 cut(s) | 8 |
| BslFI | GGGAC | 2 cut(s) | 156, 296 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 54, 265, 478, 481, 814 |
| BsmAI | GTCTC | 3 cut(s) | 26, 607, 639 |
| BsmFI | GGGAC | 2 cut(s) | 156, 296 |
| BsmI | GAATGC | 2 cut(s) | 140, 710 |
| BsnI | GGCC | 3 cut(s) | 42, 124, 868 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 94, 862 |
| Bsp143I | GATC | 4 cut(s) | 85, 163, 600, 759 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 327 |
| BspACI | CCGC | 1 cut(s) | 125 |
| BspANI | GGCC | 3 cut(s) | 42, 124, 868 |
| BspCNI | CTCAG | 5 cut(s) | 192, 311, 460, 472, 697 |
| BspLI | GGNNCC | 2 cut(s) | 284, 453 |
| BspPI | GGATC | 1 cut(s) | 754 |
| BsrDI | GCAATG | 2 cut(s) | 204, 655 |
| BsrI | ACTGG | 1 cut(s) | 365 |
| BssECI | CCNNGG | 2 cut(s) | 862, 863 |
| BssMI | GATC | 4 cut(s) | 85, 163, 600, 759 |
| BssSI | CACGAG | 1 cut(s) | 920 |
| Bst2BI | CACGAG | 1 cut(s) | 920 |
| Bst2UI | CCWGG | 2 cut(s) | 251, 864 |
| Bst4CI | ACNGT | 1 cut(s) | 476 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 12 |
| BstBAI | YACGTR | 1 cut(s) | 54 |
| BstDEI | CTNAG | 8 cut(s) | 200, 298, 327, 447, 459, 638, 705, 809 |
| BstF5I | GGATG | 4 cut(s) | 427, 581, 853, 890 |
| BstHHI | GCGC | 1 cut(s) | 234 |
| BstKTI | GATC | 4 cut(s) | 88, 166, 603, 762 |
| BstMAI | GTCTC | 3 cut(s) | 26, 607, 639 |
| BstMBI | GATC | 4 cut(s) | 85, 163, 600, 759 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 12, 231, 238 |
| BstNI | CCWGG | 2 cut(s) | 251, 864 |
| BstNSI | RCATGY | 1 cut(s) | 238 |
| BstSCI | CCNGG | 2 cut(s) | 249, 862 |
| BstSLI | GKGCMC | 2 cut(s) | 8, 862 |
| BstV1I | GCAGC | 2 cut(s) | 335, 497 |
| BsuRI | GGCC | 3 cut(s) | 42, 124, 868 |
| BtsCI | GGATG | 4 cut(s) | 427, 581, 853, 890 |
| BtsIMutI | CAGTG | 1 cut(s) | 862 |
| CfoI | GCGC | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 3 cut(s) | 283, 452, 866 |
| CviAII | CATG | 3 cut(s) | 235, 434, 517 |
| DdeI | CTNAG | 8 cut(s) | 200, 298, 327, 447, 459, 638, 705, 809 |
| DpnI | GATC | 4 cut(s) | 87, 165, 602, 761 |
| DpnII | GATC | 4 cut(s) | 85, 163, 600, 759 |
| DraI | TTTAAA | 2 cut(s) | 342, 354 |
| EaeI | YGGCCR | 1 cut(s) | 122 |
| Eco147I | AGGCCT | 1 cut(s) | 42 |
| Eco24I | GRGCYC | 1 cut(s) | 94 |
| Eco47I | GGWCC | 2 cut(s) | 283, 452 |
| Eco72I | CACGTG | 1 cut(s) | 54 |
| EcoO109I | RGGNCCY | 1 cut(s) | 452 |
| EcoRII | CCWGG | 2 cut(s) | 249, 862 |
| EcoT38I | GRGCYC | 1 cut(s) | 94 |
| FaeI | CATG | 3 cut(s) | 238, 437, 520 |
| FaqI | GGGAC | 2 cut(s) | 156, 296 |
| FatI | CATG | 3 cut(s) | 234, 433, 516 |
| FbaI | TGATCA | 1 cut(s) | 600 |
| Fnu4HI | GCNGC | 3 cut(s) | 125, 324, 486 |
| FokI | GGATG | 4 cut(s) | 434, 568, 860, 897 |
| FriOI | GRGCYC | 1 cut(s) | 94 |
| Fsp4HI | GCNGC | 3 cut(s) | 125, 324, 486 |
| FspBI | CTAG | 3 cut(s) | 408, 546, 746 |
| GlaI | GCGC | 1 cut(s) | 233 |
| GluI | GCNGC | 3 cut(s) | 125, 324, 486 |
| HaeIII | GGCC | 3 cut(s) | 42, 124, 868 |
| HhaI | GCGC | 1 cut(s) | 234 |
| Hin1II | CATG | 3 cut(s) | 238, 437, 520 |
| Hin6I | GCGC | 1 cut(s) | 232 |
| HinP1I | GCGC | 1 cut(s) | 232 |
| HindIII | AAGCTT | 1 cut(s) | 329 |
| HinfI | GANTC | 2 cut(s) | 549, 607 |
| HphI | GGTGA | 2 cut(s) | 581, 769 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 20 |
| Hpy188I | TCNGA | 4 cut(s) | 163, 554, 612, 817 |
| Hpy188III | TCNNGA | 5 cut(s) | 461, 604, 662, 741, 920 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 20 |
| HpyAV | CCTTC | 2 cut(s) | 196, 465 |
| HpyCH4III | ACNGT | 1 cut(s) | 476 |
| HpyCH4IV | ACGT | 1 cut(s) | 53 |
| HpyCH4V | TGCA | 5 cut(s) | 6, 15, 323, 520, 619 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 12, 231, 238 |
| HpyF3I | CTNAG | 8 cut(s) | 200, 298, 327, 447, 459, 638, 705, 809 |
| HpySE526I | ACGT | 1 cut(s) | 53 |
| Hsp92II | CATG | 3 cut(s) | 238, 437, 520 |
| HspAI | GCGC | 1 cut(s) | 232 |
| Ksp22I | TGATCA | 1 cut(s) | 600 |
| Kzo9I | GATC | 4 cut(s) | 85, 163, 600, 759 |
| Lsp1109I | GCAGC | 2 cut(s) | 335, 497 |
| MaeI | CTAG | 3 cut(s) | 408, 546, 746 |
| MaeII | ACGT | 1 cut(s) | 53 |
| MaeIII | GTNAC | 4 cut(s) | 195, 536, 569, 772 |
| MalI | GATC | 4 cut(s) | 87, 165, 602, 761 |
| MboI | GATC | 4 cut(s) | 85, 163, 600, 759 |
| MboII | GAAGA | 2 cut(s) | 494, 581 |
| MhlI | GDGCHC | 3 cut(s) | 8, 94, 862 |
| MmeI | TCCRAC | 1 cut(s) | 399 |
| MseI | TTAA | 2 cut(s) | 341, 353 |
| MspR9I | CCNGG | 2 cut(s) | 251, 864 |
| Mva1269I | GAATGC | 2 cut(s) | 140, 710 |
| MvaI | CCWGG | 2 cut(s) | 251, 864 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 12, 231, 238 |
| NdeII | GATC | 4 cut(s) | 85, 163, 600, 759 |
| NlaIII | CATG | 3 cut(s) | 238, 437, 520 |
| NlaIV | GGNNCC | 2 cut(s) | 284, 453 |
| NmuCI | GTSAC | 2 cut(s) | 536, 569 |
| NspI | RCATGY | 1 cut(s) | 238 |
| PasI | CCCWGGG | 1 cut(s) | 863 |
| PceI | AGGCCT | 1 cut(s) | 42 |
| PctI | GAATGC | 2 cut(s) | 140, 710 |
| PfeI | GAWTC | 2 cut(s) | 549, 607 |
| PkrI | GCNGC | 3 cut(s) | 126, 325, 487 |
| PmaCI | CACGTG | 1 cut(s) | 54 |
| PmlI | CACGTG | 1 cut(s) | 54 |
| Ppu21I | YACGTR | 1 cut(s) | 54 |
| PpuMI | RGGWCCY | 1 cut(s) | 452 |
| PsiI | TTATAA | 1 cut(s) | 734 |
| Psp5II | RGGWCCY | 1 cut(s) | 452 |
| Psp6I | CCWGG | 2 cut(s) | 249, 862 |
| PspCI | CACGTG | 1 cut(s) | 54 |
| PspGI | CCWGG | 2 cut(s) | 249, 862 |
| PspN4I | GGNNCC | 2 cut(s) | 284, 453 |
| PspPI | GGNCC | 3 cut(s) | 283, 452, 866 |
| PspPPI | RGGWCCY | 1 cut(s) | 452 |
| SaqAI | TTAA | 2 cut(s) | 341, 353 |
| SatI | GCNGC | 3 cut(s) | 125, 324, 486 |
| Sau3AI | GATC | 4 cut(s) | 85, 163, 600, 759 |
| Sau96I | GGNCC | 3 cut(s) | 283, 452, 866 |
| ScrFI | CCNGG | 2 cut(s) | 251, 864 |
| SduI | GDGCHC | 3 cut(s) | 8, 94, 862 |
| SinI | GGWCC | 2 cut(s) | 283, 452 |
| SpeI | ACTAGT | 1 cut(s) | 745 |
| SseBI | AGGCCT | 1 cut(s) | 42 |
| SsiI | CCGC | 1 cut(s) | 125 |
| SspI | AATATT | 1 cut(s) | 730 |
| SspMI | CTAG | 3 cut(s) | 408, 546, 746 |
| StuI | AGGCCT | 1 cut(s) | 42 |
| StyD4I | CCNGG | 2 cut(s) | 249, 862 |
| TaaI | ACNGT | 1 cut(s) | 476 |
| TaiI | ACGT | 1 cut(s) | 56 |
| TaqI | TCGA | 1 cut(s) | 334 |
| TauI | GCSGC | 1 cut(s) | 127 |
| TfiI | GAWTC | 2 cut(s) | 549, 607 |
| Tru1I | TTAA | 2 cut(s) | 341, 353 |
| Tru9I | TTAA | 2 cut(s) | 341, 353 |
| TscAI | CASTG | 1 cut(s) | 862 |
| TseFI | GTSAC | 2 cut(s) | 536, 569 |
| TseI | GCWGC | 2 cut(s) | 323, 485 |
| Tsp45I | GTSAC | 2 cut(s) | 536, 569 |
| TspDTI | ATGAA | 2 cut(s) | 281, 450 |
| TspGWI | ACGGA | 1 cut(s) | 524 |
| TspRI | CASTG | 1 cut(s) | 862 |
| VneI | GTGCAC | 1 cut(s) | 4 |
| VpaK11BI | GGWCC | 2 cut(s) | 283, 452 |
| XapI | RAATTY | 3 cut(s) | 100, 438, 736 |
| XceI | RCATGY | 1 cut(s) | 238 |
| XspI | CTAG | 3 cut(s) | 408, 546, 746 |