ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 800 |
| AatII | GACGTC | 1 cut(s) | 87 |
| Acc36I | ACCTGC | 2 cut(s) | 442, 764 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 65 |
| AccIII | TCCGGA | 1 cut(s) | 510 |
| AciI | CCGC | 6 cut(s) | 246, 285, 482, 673, 859, 871 |
| AclWI | GGATC | 1 cut(s) | 734 |
| AcoI | YGGCCR | 3 cut(s) | 25, 263, 381 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AcyI | GRCGYC | 2 cut(s) | 84, 270 |
| AfaI | GTAC | 2 cut(s) | 169, 456 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 65, 97, 517, 666, 719 |
| AgsI | TTSAA | 2 cut(s) | 646, 695 |
| AjiI | CACGTC | 1 cut(s) | 547 |
| AjnI | CCWGG | 1 cut(s) | 330 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 746, 778 |
| AluBI | AGCT | 2 cut(s) | 427, 491 |
| AluI | AGCT | 2 cut(s) | 427, 491 |
| Alw21I | GWGCWC | 1 cut(s) | 464 |
| Alw26I | GTCTC | 1 cut(s) | 25 |
| Alw44I | GTGCAC | 1 cut(s) | 460 |
| AlwI | GGATC | 1 cut(s) | 734 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 457 |
| Aor13HI | TCCGGA | 1 cut(s) | 510 |
| AoxI | GGCC | 3 cut(s) | 25, 263, 381 |
| ApaLI | GTGCAC | 1 cut(s) | 460 |
| ApeKI | GCWGC | 3 cut(s) | 412, 670, 856 |
| AsuHPI | GGTGA | 4 cut(s) | 80, 421, 479, 545 |
| BaeGI | GKGCMC | 1 cut(s) | 464 |
| BalI | TGGCCA | 1 cut(s) | 383 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 97, 129 |
| BbsI | GAAGAC | 1 cut(s) | 683 |
| Bbv12I | GWGCWC | 1 cut(s) | 464 |
| BbvI | GCAGC | 3 cut(s) | 424, 682, 868 |
| BccI | CCATC | 1 cut(s) | 392 |
| BceAI | ACGGC | 1 cut(s) | 50 |
| BciT130I | CCWGG | 1 cut(s) | 332 |
| BcoDI | GTCTC | 1 cut(s) | 25 |
| BfaI | CTAG | 3 cut(s) | 302, 845, 886 |
| BfuAI | ACCTGC | 2 cut(s) | 442, 764 |
| BisI | GCNGC | 3 cut(s) | 413, 671, 857 |
| BlsI | GCNGC | 3 cut(s) | 414, 672, 858 |
| Bme1390I | CCNGG | 1 cut(s) | 332 |
| BmgBI | CACGTC | 1 cut(s) | 547 |
| BmiI | GGNNCC | 1 cut(s) | 232 |
| BmrFI | CCNGG | 1 cut(s) | 332 |
| BmsI | GCATC | 3 cut(s) | 438, 696, 715 |
| BpiI | GAAGAC | 1 cut(s) | 683 |
| BsaHI | GRCGYC | 2 cut(s) | 84, 270 |
| BsaWI | WCCGGW | 1 cut(s) | 510 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 65, 97, 517, 666, 719 |
| Bse1I | ACTGG | 5 cut(s) | 161, 234, 384, 469, 610 |
| Bse3DI | GCAATG | 1 cut(s) | 597 |
| BseAI | TCCGGA | 1 cut(s) | 510 |
| BseBI | CCWGG | 1 cut(s) | 332 |
| BseGI | GGATG | 3 cut(s) | 384, 453, 706 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 65, 97, 517, 666, 719 |
| BseMI | GCAATG | 1 cut(s) | 597 |
| BseNI | ACTGG | 5 cut(s) | 161, 234, 384, 469, 610 |
| BseRI | GAGGAG | 1 cut(s) | 672 |
| BseSI | GKGCMC | 1 cut(s) | 464 |
| BseXI | GCAGC | 3 cut(s) | 424, 682, 868 |
| BseYI | CCCAGC | 2 cut(s) | 176, 491 |
| BshFI | GGCC | 3 cut(s) | 27, 265, 383 |
| BsiHKAI | GWGCWC | 1 cut(s) | 464 |
| BsiSI | CCGG | 5 cut(s) | 28, 91, 127, 266, 511 |
| BslFI | GGGAC | 2 cut(s) | 390, 487 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 65, 97, 517, 666, 719 |
| BsmAI | GTCTC | 1 cut(s) | 25 |
| BsmBI | CGTCTC | 1 cut(s) | 25 |
| BsmFI | GGGAC | 2 cut(s) | 390, 487 |
| BsnI | GGCC | 3 cut(s) | 27, 265, 383 |
| Bsp1286I | GDGCHC | 2 cut(s) | 183, 464 |
| Bsp13I | TCCGGA | 1 cut(s) | 510 |
| Bsp143I | GATC | 1 cut(s) | 726 |
| BspACI | CCGC | 6 cut(s) | 246, 285, 482, 673, 859, 871 |
| BspANI | GGCC | 3 cut(s) | 27, 265, 383 |
| BspEI | TCCGGA | 1 cut(s) | 510 |
| BspLI | GGNNCC | 1 cut(s) | 232 |
| BspMI | ACCTGC | 2 cut(s) | 442, 764 |
| BspPI | GGATC | 1 cut(s) | 734 |
| BsrDI | GCAATG | 1 cut(s) | 597 |
| BsrI | ACTGG | 5 cut(s) | 161, 234, 384, 469, 610 |
| BssMI | GATC | 1 cut(s) | 726 |
| BssNI | GRCGYC | 2 cut(s) | 84, 270 |
| Bst2UI | CCWGG | 1 cut(s) | 332 |
| Bst4CI | ACNGT | 4 cut(s) | 172, 442, 459, 533 |
| Bst6I | CTCTTC | 1 cut(s) | 641 |
| BstACI | GRCGYC | 2 cut(s) | 84, 270 |
| BstF5I | GGATG | 3 cut(s) | 384, 453, 706 |
| BstKTI | GATC | 1 cut(s) | 729 |
| BstMAI | GTCTC | 1 cut(s) | 25 |
| BstMBI | GATC | 1 cut(s) | 726 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 488, 497 |
| BstNI | CCWGG | 1 cut(s) | 332 |
| BstNSI | RCATGY | 2 cut(s) | 561, 616 |
| BstSCI | CCNGG | 1 cut(s) | 330 |
| BstSLI | GKGCMC | 1 cut(s) | 464 |
| BstV1I | GCAGC | 3 cut(s) | 424, 682, 868 |
| BstV2I | GAAGAC | 1 cut(s) | 683 |
| BsuRI | GGCC | 3 cut(s) | 27, 265, 383 |
| BtrI | CACGTC | 1 cut(s) | 547 |
| BtsCI | GGATG | 3 cut(s) | 384, 453, 706 |
| BtsI | GCAGTG | 1 cut(s) | 298 |
| BtsIMutI | CAGTG | 4 cut(s) | 298, 447, 462, 603 |
| BveI | ACCTGC | 2 cut(s) | 442, 764 |
| CaiI | CAGNNNCTG | 1 cut(s) | 457 |
| CseI | GACGC | 1 cut(s) | 278 |
| CsiI | ACCWGGT | 1 cut(s) | 330 |
| Csp6I | GTAC | 2 cut(s) | 168, 455 |
| CviAII | CATG | 5 cut(s) | 274, 558, 613, 750, 867 |
| CviQI | GTAC | 2 cut(s) | 168, 455 |
| DpnI | GATC | 1 cut(s) | 728 |
| DpnII | GATC | 1 cut(s) | 726 |
| EaeI | YGGCCR | 3 cut(s) | 25, 263, 381 |
| Eam1104I | CTCTTC | 1 cut(s) | 641 |
| EarI | CTCTTC | 1 cut(s) | 641 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| EcoRII | CCWGG | 1 cut(s) | 330 |
| EcoT22I | ATGCAT | 1 cut(s) | 618 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| Esp3I | CGTCTC | 1 cut(s) | 25 |
| FaeI | CATG | 5 cut(s) | 277, 561, 616, 753, 870 |
| FaqI | GGGAC | 2 cut(s) | 390, 487 |
| FatI | CATG | 5 cut(s) | 273, 557, 612, 749, 866 |
| FauNDI | CATATG | 1 cut(s) | 742 |
| Fnu4HI | GCNGC | 3 cut(s) | 413, 671, 857 |
| FokI | GGATG | 3 cut(s) | 371, 460, 693 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| Fsp4HI | GCNGC | 3 cut(s) | 413, 671, 857 |
| FspBI | CTAG | 3 cut(s) | 302, 845, 886 |
| GluI | GCNGC | 3 cut(s) | 413, 671, 857 |
| GsaI | CCCAGC | 2 cut(s) | 180, 495 |
| HaeIII | GGCC | 3 cut(s) | 27, 265, 383 |
| HapII | CCGG | 5 cut(s) | 28, 91, 127, 266, 511 |
| HgaI | GACGC | 1 cut(s) | 278 |
| Hin1I | GRCGYC | 2 cut(s) | 84, 270 |
| Hin1II | CATG | 5 cut(s) | 277, 561, 616, 753, 870 |
| HinfI | GANTC | 3 cut(s) | 39, 256, 679 |
| HpaII | CCGG | 5 cut(s) | 28, 91, 127, 266, 511 |
| HphI | GGTGA | 4 cut(s) | 80, 421, 479, 545 |
| Hpy166II | GTNNAC | 2 cut(s) | 168, 462 |
| Hpy188III | TCNNGA | 3 cut(s) | 511, 730, 793 |
| Hpy8I | GTNNAC | 2 cut(s) | 168, 462 |
| Hpy99I | CGWCG | 2 cut(s) | 89, 393 |
| HpyAV | CCTTC | 1 cut(s) | 65 |
| HpyCH4III | ACNGT | 4 cut(s) | 172, 442, 459, 533 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 546 |
| HpyCH4V | TGCA | 6 cut(s) | 13, 451, 462, 500, 616, 856 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 488, 497 |
| HpySE526I | ACGT | 2 cut(s) | 84, 546 |
| Hsp92I | GRCGYC | 2 cut(s) | 84, 270 |
| Hsp92II | CATG | 5 cut(s) | 277, 561, 616, 753, 870 |
| Kpn2I | TCCGGA | 1 cut(s) | 510 |
| Kzo9I | GATC | 1 cut(s) | 726 |
| LmnI | GCTCC | 3 cut(s) | 488, 746, 832 |
| Lsp1109I | GCAGC | 3 cut(s) | 424, 682, 868 |
| LweI | GCATC | 3 cut(s) | 438, 696, 715 |
| MabI | ACCWGGT | 1 cut(s) | 330 |
| MaeI | CTAG | 3 cut(s) | 302, 845, 886 |
| MaeII | ACGT | 2 cut(s) | 84, 546 |
| MaeIII | GTNAC | 4 cut(s) | 305, 467, 593, 608 |
| MalI | GATC | 1 cut(s) | 728 |
| MboI | GATC | 1 cut(s) | 726 |
| MboII | GAAGA | 3 cut(s) | 579, 658, 688 |
| MhlI | GDGCHC | 2 cut(s) | 183, 464 |
| MlsI | TGGCCA | 1 cut(s) | 383 |
| MluCI | AATT | 4 cut(s) | 130, 341, 700, 831 |
| MluNI | TGGCCA | 1 cut(s) | 383 |
| MlyI | GAGTC | 1 cut(s) | 673 |
| MmeI | TCCRAC | 1 cut(s) | 704 |
| MnlI | CCTC | 9 cut(s) | 103, 129, 343, 386, 410, 642, 693, 720, 855 |
| Mox20I | TGGCCA | 1 cut(s) | 383 |
| Mph1103I | ATGCAT | 1 cut(s) | 618 |
| MroI | TCCGGA | 1 cut(s) | 510 |
| MscI | TGGCCA | 1 cut(s) | 383 |
| MseI | TTAA | 5 cut(s) | 252, 336, 654, 699, 878 |
| Msp20I | TGGCCA | 1 cut(s) | 383 |
| MspA1I | CMGCKG | 2 cut(s) | 673, 859 |
| MspI | CCGG | 5 cut(s) | 28, 91, 127, 266, 511 |
| MspR9I | CCNGG | 1 cut(s) | 332 |
| MvaI | CCWGG | 1 cut(s) | 332 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 488, 497 |
| NdeI | CATATG | 1 cut(s) | 742 |
| NdeII | GATC | 1 cut(s) | 726 |
| NlaIII | CATG | 5 cut(s) | 277, 561, 616, 753, 870 |
| NlaIV | GGNNCC | 1 cut(s) | 232 |
| NmuCI | GTSAC | 3 cut(s) | 467, 593, 608 |
| NsiI | ATGCAT | 1 cut(s) | 618 |
| NspI | RCATGY | 2 cut(s) | 561, 616 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 15 |
| PfeI | GAWTC | 2 cut(s) | 39, 256 |
| PflFI | GACNNNGTC | 1 cut(s) | 86 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 65 |
| PkrI | GCNGC | 3 cut(s) | 414, 672, 858 |
| PleI | GAGTC | 1 cut(s) | 673 |
| PpsI | GAGTC | 1 cut(s) | 673 |
| PsiI | TTATAA | 1 cut(s) | 800 |
| Psp6I | CCWGG | 1 cut(s) | 330 |
| PspFI | CCCAGC | 2 cut(s) | 176, 491 |
| PspGI | CCWGG | 1 cut(s) | 330 |
| PspN4I | GGNNCC | 1 cut(s) | 232 |
| PstNI | CAGNNNCTG | 1 cut(s) | 457 |
| PsyI | GACNNNGTC | 1 cut(s) | 86 |
| RsaI | GTAC | 2 cut(s) | 169, 456 |
| RsaNI | GTAC | 2 cut(s) | 168, 455 |
| SaqAI | TTAA | 5 cut(s) | 252, 336, 654, 699, 878 |
| SatI | GCNGC | 3 cut(s) | 413, 671, 857 |
| Sau3AI | GATC | 1 cut(s) | 726 |
| SchI | GAGTC | 1 cut(s) | 673 |
| ScrFI | CCNGG | 1 cut(s) | 332 |
| SduI | GDGCHC | 2 cut(s) | 183, 464 |
| SexAI | ACCWGGT | 1 cut(s) | 330 |
| SfaNI | GCATC | 3 cut(s) | 438, 696, 715 |
| Sse9I | AATT | 4 cut(s) | 130, 341, 700, 831 |
| SsiI | CCGC | 6 cut(s) | 246, 285, 482, 673, 859, 871 |
| SspI | AATATT | 1 cut(s) | 541 |
| SspMI | CTAG | 3 cut(s) | 302, 845, 886 |
| StyD4I | CCNGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 4 cut(s) | 172, 442, 459, 533 |
| TaiI | ACGT | 2 cut(s) | 87, 549 |
| TaqI | TCGA | 2 cut(s) | 18, 391 |
| TasI | AATT | 4 cut(s) | 130, 341, 700, 831 |
| TfiI | GAWTC | 2 cut(s) | 39, 256 |
| Tru1I | TTAA | 5 cut(s) | 252, 336, 654, 699, 878 |
| Tru9I | TTAA | 5 cut(s) | 252, 336, 654, 699, 878 |
| TscAI | CASTG | 4 cut(s) | 298, 447, 469, 610 |
| TseFI | GTSAC | 3 cut(s) | 467, 593, 608 |
| TseI | GCWGC | 3 cut(s) | 412, 670, 856 |
| Tsp45I | GTSAC | 3 cut(s) | 467, 593, 608 |
| TspGWI | ACGGA | 4 cut(s) | 324, 377, 501, 702 |
| TspRI | CASTG | 4 cut(s) | 298, 447, 469, 610 |
| Tth111I | GACNNNGTC | 1 cut(s) | 86 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 65 |
| VneI | GTGCAC | 1 cut(s) | 460 |
| XceI | RCATGY | 2 cut(s) | 561, 616 |
| XspI | CTAG | 3 cut(s) | 302, 845, 886 |
| ZraI | GACGTC | 1 cut(s) | 85 |
| Zsp2I | ATGCAT | 1 cut(s) | 618 |