ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 4 - 190 | 3.6e-15 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 1103, 1154 |
| Acc36I | ACCTGC | 1 cut(s) | 829 |
| AccIII | TCCGGA | 2 cut(s) | 55, 924 |
| AciI | CCGC | 1 cut(s) | 609 |
| AclWI | GGATC | 4 cut(s) | 35, 238, 623, 665 |
| AcoI | YGGCCR | 1 cut(s) | 772 |
| AcsI | RAATTY | 2 cut(s) | 140, 539 |
| AcuI | CTGAAG | 1 cut(s) | 876 |
| AfaI | GTAC | 3 cut(s) | 111, 533, 1173 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 299, 455 |
| AflIII | ACRYGT | 1 cut(s) | 787 |
| AgsI | TTSAA | 6 cut(s) | 52, 82, 388, 544, 761, 1113 |
| AjnI | CCWGG | 1 cut(s) | 813 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1127, 1159 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 810, 842 |
| AluBI | AGCT | 5 cut(s) | 250, 268, 328, 1091, 1241 |
| AluI | AGCT | 5 cut(s) | 250, 268, 328, 1091, 1241 |
| Alw26I | GTCTC | 1 cut(s) | 389 |
| AlwI | GGATC | 4 cut(s) | 35, 238, 623, 665 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 854 |
| Ama87I | CYCGRG | 1 cut(s) | 245 |
| Aor13HI | TCCGGA | 2 cut(s) | 55, 924 |
| AoxI | GGCC | 6 cut(s) | 87, 133, 202, 465, 772, 942 |
| ApeKI | GCWGC | 7 cut(s) | 4, 592, 1037, 1091, 1099, 1238, 1253 |
| ApoI | RAATTY | 2 cut(s) | 140, 539 |
| AspLEI | GCGC | 3 cut(s) | 448, 1104, 1155 |
| AspS9I | GGNCC | 3 cut(s) | 88, 818, 943 |
| AsuHPI | GGTGA | 3 cut(s) | 803, 815, 1224 |
| AsuII | TTCGAA | 1 cut(s) | 517 |
| AvaI | CYCGRG | 1 cut(s) | 245 |
| AvaII | GGWCC | 1 cut(s) | 818 |
| AxyI | CCTNAGG | 1 cut(s) | 1051 |
| BbvI | GCAGC | 7 cut(s) | 16, 604, 1024, 1078, 1086, 1240, 1250 |
| BccI | CCATC | 3 cut(s) | 161, 569, 682 |
| BciT130I | CCWGG | 1 cut(s) | 815 |
| BclI | TGATCA | 1 cut(s) | 256 |
| BcoDI | GTCTC | 1 cut(s) | 389 |
| BfaI | CTAG | 1 cut(s) | 704 |
| BfmI | CTRYAG | 3 cut(s) | 469, 902, 1038 |
| BfuAI | ACCTGC | 1 cut(s) | 829 |
| BisI | GCNGC | 7 cut(s) | 5, 593, 1038, 1092, 1100, 1239, 1254 |
| BlsI | GCNGC | 7 cut(s) | 6, 594, 1039, 1093, 1101, 1240, 1255 |
| Bme1390I | CCNGG | 1 cut(s) | 815 |
| Bme18I | GGWCC | 1 cut(s) | 818 |
| BmeT110I | CYCGRG | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 3 cut(s) | 88, 818, 943 |
| BmiI | GGNNCC | 4 cut(s) | 90, 583, 819, 1072 |
| BmrFI | CCNGG | 1 cut(s) | 815 |
| BmsI | GCATC | 6 cut(s) | 175, 304, 904, 930, 1003, 1120 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 735, 767 |
| BpmI | CTGGAG | 3 cut(s) | 356, 363, 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 517 |
| BpuEI | CTTGAG | 2 cut(s) | 737, 1146 |
| BsaJI | CCNNGG | 3 cut(s) | 402, 585, 814 |
| BsaWI | WCCGGW | 2 cut(s) | 55, 924 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 299, 455 |
| Bse1I | ACTGG | 1 cut(s) | 642 |
| Bse21I | CCTNAGG | 1 cut(s) | 1051 |
| Bse3DI | GCAATG | 3 cut(s) | 412, 1038, 1155 |
| BseAI | TCCGGA | 2 cut(s) | 55, 924 |
| BseBI | CCWGG | 1 cut(s) | 815 |
| BseDI | CCNNGG | 3 cut(s) | 402, 585, 814 |
| BseGI | GGATG | 2 cut(s) | 190, 921 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 299, 455 |
| BseMI | GCAATG | 3 cut(s) | 412, 1038, 1155 |
| BseMII | CTCAG | 2 cut(s) | 150, 384 |
| BseNI | ACTGG | 1 cut(s) | 642 |
| BseRI | GAGGAG | 3 cut(s) | 389, 392, 809 |
| BseXI | GCAGC | 7 cut(s) | 16, 604, 1024, 1078, 1086, 1240, 1250 |
| BsgI | GTGCAG | 3 cut(s) | 611, 1086, 1239 |
| BshFI | GGCC | 6 cut(s) | 89, 135, 204, 467, 774, 944 |
| BsiHKCI | CYCGRG | 1 cut(s) | 245 |
| BsiSI | CCGG | 2 cut(s) | 56, 925 |
| BslFI | GGGAC | 3 cut(s) | 714, 831, 879 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 299, 455 |
| BsmAI | GTCTC | 1 cut(s) | 389 |
| BsmFI | GGGAC | 3 cut(s) | 714, 831, 879 |
| BsnI | GGCC | 6 cut(s) | 89, 135, 204, 467, 774, 944 |
| BsoBI | CYCGRG | 1 cut(s) | 245 |
| Bsp119I | TTCGAA | 1 cut(s) | 517 |
| Bsp13I | TCCGGA | 2 cut(s) | 55, 924 |
| Bsp1407I | TGTACA | 1 cut(s) | 1171 |
| Bsp143I | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| Bsp19I | CCATGG | 2 cut(s) | 402, 585 |
| BspACI | CCGC | 1 cut(s) | 609 |
| BspANI | GGCC | 6 cut(s) | 89, 135, 204, 467, 774, 944 |
| BspCNI | CTCAG | 2 cut(s) | 151, 385 |
| BspEI | TCCGGA | 2 cut(s) | 55, 924 |
| BspLI | GGNNCC | 4 cut(s) | 90, 583, 819, 1072 |
| BspMAI | CTGCAG | 1 cut(s) | 1042 |
| BspMI | ACCTGC | 1 cut(s) | 829 |
| BspPI | GGATC | 4 cut(s) | 35, 238, 623, 665 |
| BspT104I | TTCGAA | 1 cut(s) | 517 |
| BsrDI | GCAATG | 3 cut(s) | 412, 1038, 1155 |
| BsrGI | TGTACA | 1 cut(s) | 1171 |
| BsrI | ACTGG | 1 cut(s) | 642 |
| BssECI | CCNNGG | 3 cut(s) | 402, 585, 814 |
| BssMI | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| BssT1I | CCWWGG | 2 cut(s) | 402, 585 |
| Bst2UI | CCWGG | 1 cut(s) | 815 |
| Bst4CI | ACNGT | 1 cut(s) | 906 |
| Bst6I | CTCTTC | 2 cut(s) | 370, 1148 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1037 |
| BstAUI | TGTACA | 1 cut(s) | 1171 |
| BstBI | TTCGAA | 1 cut(s) | 517 |
| BstC8I | GCNNGC | 3 cut(s) | 133, 266, 1258 |
| BstDEI | CTNAG | 7 cut(s) | 159, 304, 393, 462, 495, 1004, 1051 |
| BstDSI | CCRYGG | 2 cut(s) | 402, 585 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 453 |
| BstF5I | GGATG | 2 cut(s) | 190, 921 |
| BstHHI | GCGC | 3 cut(s) | 448, 1104, 1155 |
| BstKTI | GATC | 6 cut(s) | 43, 233, 259, 631, 673, 952 |
| BstMAI | GTCTC | 1 cut(s) | 389 |
| BstMBI | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 733, 845, 1005, 1037, 1088 |
| BstNI | CCWGG | 1 cut(s) | 815 |
| BstNSI | RCATGY | 3 cut(s) | 515, 599, 791 |
| BstSCI | CCNGG | 1 cut(s) | 813 |
| BstSFI | CTRYAG | 3 cut(s) | 469, 902, 1038 |
| BstV1I | GCAGC | 7 cut(s) | 16, 604, 1024, 1078, 1086, 1240, 1250 |
| BstX2I | RGATCY | 1 cut(s) | 670 |
| BstYI | RGATCY | 1 cut(s) | 670 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1051 |
| BsuRI | GGCC | 6 cut(s) | 89, 135, 204, 467, 774, 944 |
| BtgI | CCRYGG | 2 cut(s) | 402, 585 |
| BtsCI | GGATG | 2 cut(s) | 190, 921 |
| BtsI | GCAGTG | 2 cut(s) | 855, 1047 |
| BtsIMutI | CAGTG | 3 cut(s) | 156, 855, 1047 |
| BveI | ACCTGC | 1 cut(s) | 829 |
| Cac8I | GCNNGC | 3 cut(s) | 133, 266, 1258 |
| CaiI | CAGNNNCTG | 1 cut(s) | 854 |
| CfoI | GCGC | 3 cut(s) | 448, 1104, 1155 |
| Cfr13I | GGNCC | 3 cut(s) | 88, 818, 943 |
| Csp6I | GTAC | 3 cut(s) | 110, 532, 1172 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 204, 239 |
| CviQI | GTAC | 3 cut(s) | 110, 532, 1172 |
| DdeI | CTNAG | 7 cut(s) | 159, 304, 393, 462, 495, 1004, 1051 |
| DpnI | GATC | 6 cut(s) | 42, 232, 258, 630, 672, 951 |
| DpnII | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| DraI | TTTAAA | 1 cut(s) | 96 |
| EaeI | YGGCCR | 1 cut(s) | 772 |
| Eam1104I | CTCTTC | 2 cut(s) | 370, 1148 |
| EarI | CTCTTC | 2 cut(s) | 370, 1148 |
| Eco130I | CCWWGG | 2 cut(s) | 402, 585 |
| Eco147I | AGGCCT | 1 cut(s) | 467 |
| Eco32I | GATATC | 1 cut(s) | 422 |
| Eco47I | GGWCC | 1 cut(s) | 818 |
| Eco57I | CTGAAG | 1 cut(s) | 876 |
| Eco81I | CCTNAGG | 1 cut(s) | 1051 |
| Eco88I | CYCGRG | 1 cut(s) | 245 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 453 |
| EcoO109I | RGGNCCY | 2 cut(s) | 88, 818 |
| EcoRI | GAATTC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 1 cut(s) | 813 |
| EcoRV | GATATC | 1 cut(s) | 422 |
| EcoT14I | CCWWGG | 2 cut(s) | 402, 585 |
| ErhI | CCWWGG | 2 cut(s) | 402, 585 |
| FaqI | GGGAC | 3 cut(s) | 714, 831, 879 |
| FauNDI | CATATG | 1 cut(s) | 715 |
| FbaI | TGATCA | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 7 cut(s) | 5, 593, 1038, 1092, 1100, 1239, 1254 |
| FokI | GGATG | 2 cut(s) | 197, 908 |
| Fsp4HI | GCNGC | 7 cut(s) | 5, 593, 1038, 1092, 1100, 1239, 1254 |
| FspAI | RTGCGCAY | 1 cut(s) | 1154 |
| FspBI | CTAG | 1 cut(s) | 704 |
| FspI | TGCGCA | 2 cut(s) | 1103, 1154 |
| GlaI | GCGC | 3 cut(s) | 447, 1103, 1154 |
| GluI | GCNGC | 7 cut(s) | 5, 593, 1038, 1092, 1100, 1239, 1254 |
| GsuI | CTGGAG | 3 cut(s) | 356, 363, 411 |
| HaeIII | GGCC | 6 cut(s) | 89, 135, 204, 467, 774, 944 |
| HapII | CCGG | 2 cut(s) | 56, 925 |
| HhaI | GCGC | 3 cut(s) | 448, 1104, 1155 |
| Hin6I | GCGC | 3 cut(s) | 446, 1102, 1153 |
| HinP1I | GCGC | 3 cut(s) | 446, 1102, 1153 |
| HindIII | AAGCTT | 1 cut(s) | 266 |
| HinfI | GANTC | 6 cut(s) | 52, 308, 338, 345, 488, 1019 |
| HpaII | CCGG | 2 cut(s) | 56, 925 |
| HphI | GGTGA | 3 cut(s) | 803, 815, 1224 |
| Hpy166II | GTNNAC | 2 cut(s) | 110, 550 |
| Hpy188I | TCNGA | 4 cut(s) | 313, 370, 1024, 1216 |
| Hpy188III | TCNNGA | 9 cut(s) | 56, 82, 145, 335, 342, 428, 632, 925, 1266 |
| Hpy8I | GTNNAC | 2 cut(s) | 110, 550 |
| Hpy99I | CGWCG | 1 cut(s) | 374 |
| HpyAV | CCTTC | 6 cut(s) | 79, 459, 776, 793, 922, 1148 |
| HpyCH4III | ACNGT | 1 cut(s) | 906 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 733, 845, 1005, 1037, 1088 |
| HpyF3I | CTNAG | 7 cut(s) | 159, 304, 393, 462, 495, 1004, 1051 |
| HspAI | GCGC | 3 cut(s) | 446, 1102, 1153 |
| Kpn2I | TCCGGA | 2 cut(s) | 55, 924 |
| Ksp22I | TGATCA | 1 cut(s) | 256 |
| Kzo9I | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| Lsp1109I | GCAGC | 7 cut(s) | 16, 604, 1024, 1078, 1086, 1240, 1250 |
| LweI | GCATC | 6 cut(s) | 175, 304, 904, 930, 1003, 1120 |
| MaeI | CTAG | 1 cut(s) | 704 |
| MaeIII | GTNAC | 1 cut(s) | 152 |
| MalI | GATC | 6 cut(s) | 42, 232, 258, 630, 672, 951 |
| MboI | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| MboII | GAAGA | 6 cut(s) | 357, 531, 680, 869, 890, 1135 |
| MfeI | CAATTG | 1 cut(s) | 216 |
| MflI | RGATCY | 1 cut(s) | 670 |
| MluCI | AATT | 9 cut(s) | 75, 140, 216, 278, 435, 539, 834, 860, 879 |
| MlyI | GAGTC | 2 cut(s) | 347, 354 |
| MmeI | TCCRAC | 2 cut(s) | 393, 1239 |
| MroI | TCCGGA | 2 cut(s) | 55, 924 |
| MseI | TTAA | 4 cut(s) | 65, 95, 870, 995 |
| MslI | CAYNNNNRTG | 2 cut(s) | 624, 687 |
| MspI | CCGG | 2 cut(s) | 56, 925 |
| MspR9I | CCNGG | 1 cut(s) | 815 |
| MunI | CAATTG | 1 cut(s) | 216 |
| MvaI | CCWGG | 1 cut(s) | 815 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 733, 845, 1005, 1037, 1088 |
| NcoI | CCATGG | 2 cut(s) | 402, 585 |
| NdeI | CATATG | 1 cut(s) | 715 |
| NdeII | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| NlaIV | GGNNCC | 4 cut(s) | 90, 583, 819, 1072 |
| NmeAIII | GCCGAG | 1 cut(s) | 750 |
| NsbI | TGCGCA | 2 cut(s) | 1103, 1154 |
| NspI | RCATGY | 3 cut(s) | 515, 599, 791 |
| NspV | TTCGAA | 1 cut(s) | 517 |
| PaeR7I | CTCGAG | 1 cut(s) | 245 |
| PceI | AGGCCT | 1 cut(s) | 467 |
| PciI | ACATGT | 1 cut(s) | 787 |
| PfeI | GAWTC | 4 cut(s) | 52, 308, 488, 1019 |
| PkrI | GCNGC | 7 cut(s) | 6, 594, 1039, 1093, 1101, 1240, 1255 |
| PleI | GAGTC | 2 cut(s) | 346, 353 |
| PpsI | GAGTC | 2 cut(s) | 346, 353 |
| PpuMI | RGGWCCY | 1 cut(s) | 818 |
| PscI | ACATGT | 1 cut(s) | 787 |
| Psp5II | RGGWCCY | 1 cut(s) | 818 |
| Psp6I | CCWGG | 1 cut(s) | 813 |
| PspGI | CCWGG | 1 cut(s) | 813 |
| PspN4I | GGNNCC | 4 cut(s) | 90, 583, 819, 1072 |
| PspPI | GGNCC | 3 cut(s) | 88, 818, 943 |
| PspPPI | RGGWCCY | 1 cut(s) | 818 |
| PspXI | VCTCGAGB | 1 cut(s) | 245 |
| PstI | CTGCAG | 1 cut(s) | 1042 |
| PstNI | CAGNNNCTG | 1 cut(s) | 854 |
| PsuI | RGATCY | 1 cut(s) | 670 |
| RsaI | GTAC | 3 cut(s) | 111, 533, 1173 |
| RsaNI | GTAC | 3 cut(s) | 110, 532, 1172 |
| RseI | CAYNNNNRTG | 2 cut(s) | 624, 687 |
| SaqAI | TTAA | 4 cut(s) | 65, 95, 870, 995 |
| SatI | GCNGC | 7 cut(s) | 5, 593, 1038, 1092, 1100, 1239, 1254 |
| Sau3AI | GATC | 6 cut(s) | 40, 230, 256, 628, 670, 949 |
| Sau96I | GGNCC | 3 cut(s) | 88, 818, 943 |
| SchI | GAGTC | 2 cut(s) | 347, 354 |
| ScrFI | CCNGG | 1 cut(s) | 815 |
| SfaNI | GCATC | 6 cut(s) | 175, 304, 904, 930, 1003, 1120 |
| SfcI | CTRYAG | 3 cut(s) | 469, 902, 1038 |
| Sfr274I | CTCGAG | 1 cut(s) | 245 |
| SfuI | TTCGAA | 1 cut(s) | 517 |
| SinI | GGWCC | 1 cut(s) | 818 |
| SlaI | CTCGAG | 1 cut(s) | 245 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 624, 687 |
| SmlI | CTYRAG | 3 cut(s) | 245, 752, 1161 |
| SmoI | CTYRAG | 3 cut(s) | 245, 752, 1161 |
| Sse9I | AATT | 9 cut(s) | 75, 140, 216, 278, 435, 539, 834, 860, 879 |
| SseBI | AGGCCT | 1 cut(s) | 467 |
| SsiI | CCGC | 1 cut(s) | 609 |
| SspMI | CTAG | 1 cut(s) | 704 |
| StuI | AGGCCT | 1 cut(s) | 467 |
| StyD4I | CCNGG | 1 cut(s) | 813 |
| StyI | CCWWGG | 2 cut(s) | 402, 585 |
| TaaI | ACNGT | 1 cut(s) | 906 |
| TaqI | TCGA | 3 cut(s) | 199, 246, 517 |
| TasI | AATT | 9 cut(s) | 75, 140, 216, 278, 435, 539, 834, 860, 879 |
| TatI | WGTACW | 1 cut(s) | 1171 |
| TfiI | GAWTC | 4 cut(s) | 52, 308, 488, 1019 |
| Tru1I | TTAA | 4 cut(s) | 65, 95, 870, 995 |
| Tru9I | TTAA | 4 cut(s) | 65, 95, 870, 995 |
| TscAI | CASTG | 3 cut(s) | 163, 855, 1047 |
| TseI | GCWGC | 7 cut(s) | 4, 592, 1037, 1091, 1099, 1238, 1253 |
| TspDTI | ATGAA | 3 cut(s) | 185, 401, 636 |
| TspGWI | ACGGA | 1 cut(s) | 582 |
| TspRI | CASTG | 3 cut(s) | 163, 855, 1047 |
| VpaK11BI | GGWCC | 1 cut(s) | 818 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 453 |
| XapI | RAATTY | 2 cut(s) | 140, 539 |
| XceI | RCATGY | 3 cut(s) | 515, 599, 791 |
| XhoI | CTCGAG | 1 cut(s) | 245 |
| XspI | CTAG | 1 cut(s) | 704 |