ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 432 |
| AccBSI | CCGCTC | 1 cut(s) | 328 |
| AccI | GTMKAC | 1 cut(s) | 500 |
| AciI | CCGC | 4 cut(s) | 97, 274, 328, 457 |
| AclWI | GGATC | 2 cut(s) | 13, 506 |
| AcoI | YGGCCR | 1 cut(s) | 72 |
| AcuI | CTGAAG | 1 cut(s) | 290 |
| AfaI | GTAC | 1 cut(s) | 205 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 430 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AgsI | TTSAA | 4 cut(s) | 33, 166, 235, 350 |
| AjnI | CCWGG | 1 cut(s) | 188 |
| AluBI | AGCT | 1 cut(s) | 115 |
| AluI | AGCT | 1 cut(s) | 115 |
| Alw26I | GTCTC | 1 cut(s) | 395 |
| AlwI | GGATC | 2 cut(s) | 13, 506 |
| AoxI | GGCC | 5 cut(s) | 72, 102, 186, 343, 404 |
| AspS9I | GGNCC | 3 cut(s) | 102, 157, 405 |
| AsuHPI | GGTGA | 2 cut(s) | 494, 515 |
| AvaII | GGWCC | 1 cut(s) | 157 |
| AxyI | CCTNAGG | 1 cut(s) | 83 |
| BauI | CACGAG | 1 cut(s) | 76 |
| BccI | CCATC | 3 cut(s) | 164, 335, 437 |
| BceAI | ACGGC | 1 cut(s) | 87 |
| BciT130I | CCWGG | 1 cut(s) | 190 |
| BcoDI | GTCTC | 1 cut(s) | 395 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| BfuAI | ACCTGC | 1 cut(s) | 432 |
| Bme1390I | CCNGG | 1 cut(s) | 190 |
| Bme18I | GGWCC | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 3 cut(s) | 102, 157, 405 |
| BmiI | GGNNCC | 3 cut(s) | 158, 159, 332 |
| BmrFI | CCNGG | 1 cut(s) | 190 |
| BmsI | GCATC | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 1 cut(s) | 377 |
| BsaI | GGTCTC | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 430 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| Bse21I | CCTNAGG | 1 cut(s) | 83 |
| Bse3DI | GCAATG | 2 cut(s) | 5, 434 |
| BseBI | CCWGG | 1 cut(s) | 190 |
| BseGI | GGATG | 1 cut(s) | 448 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BseMI | GCAATG | 2 cut(s) | 5, 434 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BseRI | GAGGAG | 1 cut(s) | 77 |
| BseYI | CCCAGC | 1 cut(s) | 478 |
| BshFI | GGCC | 5 cut(s) | 74, 104, 188, 345, 406 |
| BsiSI | CCGG | 1 cut(s) | 105 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BsmAI | GTCTC | 1 cut(s) | 395 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsnI | GGCC | 5 cut(s) | 74, 104, 188, 345, 406 |
| Bso31I | GGTCTC | 1 cut(s) | 395 |
| Bsp143I | GATC | 2 cut(s) | 18, 511 |
| BspACI | CCGC | 4 cut(s) | 97, 274, 328, 457 |
| BspANI | GGCC | 5 cut(s) | 74, 104, 188, 345, 406 |
| BspLI | GGNNCC | 3 cut(s) | 158, 159, 332 |
| BspMI | ACCTGC | 1 cut(s) | 432 |
| BspPI | GGATC | 2 cut(s) | 13, 506 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BspTNI | GGTCTC | 1 cut(s) | 395 |
| BsrBI | CCGCTC | 1 cut(s) | 328 |
| BsrDI | GCAATG | 2 cut(s) | 5, 434 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssMI | GATC | 2 cut(s) | 18, 511 |
| BssSI | CACGAG | 1 cut(s) | 76 |
| Bst2BI | CACGAG | 1 cut(s) | 76 |
| Bst2UI | CCWGG | 1 cut(s) | 190 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 1 cut(s) | 117 |
| BstDEI | CTNAG | 1 cut(s) | 83 |
| BstF5I | GGATG | 1 cut(s) | 448 |
| BstKTI | GATC | 2 cut(s) | 21, 514 |
| BstMAI | GTCTC | 1 cut(s) | 395 |
| BstMBI | GATC | 2 cut(s) | 18, 511 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 125, 185, 271, 351 |
| BstNI | CCWGG | 1 cut(s) | 190 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstSCI | CCNGG | 1 cut(s) | 188 |
| Bsu36I | CCTNAGG | 1 cut(s) | 83 |
| BsuRI | GGCC | 5 cut(s) | 74, 104, 188, 345, 406 |
| BtsCI | GGATG | 1 cut(s) | 448 |
| BveI | ACCTGC | 1 cut(s) | 432 |
| Cac8I | GCNNGC | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 3 cut(s) | 102, 157, 405 |
| Csp6I | GTAC | 1 cut(s) | 204 |
| CviAII | CATG | 2 cut(s) | 125, 323 |
| CviQI | GTAC | 1 cut(s) | 204 |
| DdeI | CTNAG | 1 cut(s) | 83 |
| DpnI | GATC | 2 cut(s) | 20, 513 |
| DpnII | GATC | 2 cut(s) | 18, 511 |
| EaeI | YGGCCR | 1 cut(s) | 72 |
| Eco31I | GGTCTC | 1 cut(s) | 395 |
| Eco47I | GGWCC | 1 cut(s) | 157 |
| Eco57I | CTGAAG | 1 cut(s) | 290 |
| Eco81I | CCTNAGG | 1 cut(s) | 83 |
| EcoO109I | RGGNCCY | 1 cut(s) | 157 |
| EcoRII | CCWGG | 1 cut(s) | 188 |
| FaeI | CATG | 2 cut(s) | 128, 326 |
| FaiI | YATR | 3 cut(s) | 126, 177, 324 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 245, 277, 343, 375 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| FatI | CATG | 2 cut(s) | 124, 322 |
| FblI | GTMKAC | 1 cut(s) | 500 |
| FokI | GGATG | 1 cut(s) | 455 |
| GsaI | CCCAGC | 1 cut(s) | 482 |
| HaeIII | GGCC | 5 cut(s) | 74, 104, 188, 345, 406 |
| HapII | CCGG | 1 cut(s) | 105 |
| Hin1II | CATG | 2 cut(s) | 128, 326 |
| HinfI | GANTC | 2 cut(s) | 133, 497 |
| HpaII | CCGG | 1 cut(s) | 105 |
| HphI | GGTGA | 2 cut(s) | 494, 515 |
| Hpy166II | GTNNAC | 1 cut(s) | 501 |
| Hpy188I | TCNGA | 1 cut(s) | 270 |
| Hpy188III | TCNNGA | 2 cut(s) | 148, 394 |
| Hpy8I | GTNNAC | 1 cut(s) | 501 |
| HpyAV | CCTTC | 4 cut(s) | 212, 315, 356, 460 |
| HpyCH4V | TGCA | 5 cut(s) | 10, 248, 322, 419, 427 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 125, 185, 271, 351 |
| HpyF3I | CTNAG | 1 cut(s) | 83 |
| Hsp92II | CATG | 2 cut(s) | 128, 326 |
| KflI | GGGWCCC | 1 cut(s) | 157 |
| Kzo9I | GATC | 2 cut(s) | 18, 511 |
| LpnPI | CCDG | 8 cut(s) | 35, 101, 118, 133, 175, 202, 437, 464 |
| LweI | GCATC | 1 cut(s) | 363 |
| MalI | GATC | 2 cut(s) | 20, 513 |
| MbiI | CCGCTC | 1 cut(s) | 328 |
| MboI | GATC | 2 cut(s) | 18, 511 |
| MboII | GAAGA | 1 cut(s) | 227 |
| MfeI | CAATTG | 1 cut(s) | 505 |
| MluCI | AATT | 7 cut(s) | 14, 139, 378, 414, 435, 472, 505 |
| MlyI | GAGTC | 2 cut(s) | 127, 506 |
| MnlI | CCTC | 5 cut(s) | 55, 277, 286, 290, 418 |
| MseI | TTAA | 2 cut(s) | 252, 534 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MspI | CCGG | 1 cut(s) | 105 |
| MspR9I | CCNGG | 1 cut(s) | 190 |
| MunI | CAATTG | 1 cut(s) | 505 |
| MvaI | CCWGG | 1 cut(s) | 190 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 125, 185, 271, 351 |
| NdeII | GATC | 2 cut(s) | 18, 511 |
| NlaIII | CATG | 2 cut(s) | 128, 326 |
| NlaIV | GGNNCC | 3 cut(s) | 158, 159, 332 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PleI | GAGTC | 2 cut(s) | 127, 505 |
| PpsI | GAGTC | 2 cut(s) | 127, 505 |
| PpuMI | RGGWCCY | 1 cut(s) | 157 |
| Psp5II | RGGWCCY | 1 cut(s) | 157 |
| Psp6I | CCWGG | 1 cut(s) | 188 |
| PspFI | CCCAGC | 1 cut(s) | 478 |
| PspGI | CCWGG | 1 cut(s) | 188 |
| PspN4I | GGNNCC | 3 cut(s) | 158, 159, 332 |
| PspPI | GGNCC | 3 cut(s) | 102, 157, 405 |
| PspPPI | RGGWCCY | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 205 |
| RsaNI | GTAC | 1 cut(s) | 204 |
| SaqAI | TTAA | 2 cut(s) | 252, 534 |
| Sau3AI | GATC | 2 cut(s) | 18, 511 |
| Sau96I | GGNCC | 3 cut(s) | 102, 157, 405 |
| SchI | GAGTC | 2 cut(s) | 127, 506 |
| ScrFI | CCNGG | 1 cut(s) | 190 |
| SetI | ASST | 4 cut(s) | 117, 223, 288, 426 |
| SfaNI | GCATC | 1 cut(s) | 363 |
| SinI | GGWCC | 1 cut(s) | 157 |
| SmlI | CTYRAG | 2 cut(s) | 251, 392 |
| SmoI | CTYRAG | 2 cut(s) | 251, 392 |
| Sse9I | AATT | 7 cut(s) | 14, 139, 378, 414, 435, 472, 505 |
| SsiI | CCGC | 4 cut(s) | 97, 274, 328, 457 |
| StyD4I | CCNGG | 1 cut(s) | 188 |
| TaqI | TCGA | 1 cut(s) | 49 |
| TaqII | GACCGA | 1 cut(s) | 377 |
| TasI | AATT | 7 cut(s) | 14, 139, 378, 414, 435, 472, 505 |
| Tru1I | TTAA | 2 cut(s) | 252, 534 |
| Tru9I | TTAA | 2 cut(s) | 252, 534 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 1 cut(s) | 157 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XmiI | GTMKAC | 1 cut(s) | 500 |