ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 566 |
| AciI | CCGC | 4 cut(s) | 40, 82, 208, 781 |
| AcsI | RAATTY | 2 cut(s) | 283, 896 |
| AfaI | GTAC | 2 cut(s) | 114, 380 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 566 |
| AflII | CTTAAG | 1 cut(s) | 1042 |
| AgsI | TTSAA | 3 cut(s) | 283, 533, 944 |
| AjnI | CCWGG | 1 cut(s) | 776 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 956, 988 |
| AluBI | AGCT | 6 cut(s) | 227, 244, 581, 601, 821, 967 |
| AluI | AGCT | 6 cut(s) | 227, 244, 581, 601, 821, 967 |
| Alw26I | GTCTC | 2 cut(s) | 548, 725 |
| AoxI | GGCC | 1 cut(s) | 557 |
| ApeKI | GCWGC | 2 cut(s) | 224, 227 |
| ApoI | RAATTY | 2 cut(s) | 283, 896 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 262, 294 |
| AspA2I | CCTAGG | 1 cut(s) | 868 |
| AspLEI | GCGC | 1 cut(s) | 528 |
| AspS9I | GGNCC | 1 cut(s) | 1024 |
| AsuNHI | GCTAGC | 1 cut(s) | 400 |
| AvaII | GGWCC | 1 cut(s) | 1024 |
| AvrII | CCTAGG | 1 cut(s) | 868 |
| BbvI | GCAGC | 2 cut(s) | 214, 236 |
| BccI | CCATC | 4 cut(s) | 446, 452, 809, 827 |
| BciT130I | CCWGG | 1 cut(s) | 778 |
| BclI | TGATCA | 1 cut(s) | 672 |
| BcoDI | GTCTC | 2 cut(s) | 548, 725 |
| BfaI | CTAG | 7 cut(s) | 29, 401, 440, 494, 869, 902, 921 |
| BfmI | CTRYAG | 3 cut(s) | 65, 222, 742 |
| BfoI | RGCGCY | 1 cut(s) | 529 |
| BfrI | CTTAAG | 1 cut(s) | 1042 |
| BisI | GCNGC | 4 cut(s) | 41, 209, 225, 228 |
| BlnI | CCTAGG | 1 cut(s) | 868 |
| BlsI | GCNGC | 4 cut(s) | 42, 210, 226, 229 |
| BmcAI | AGTACT | 1 cut(s) | 380 |
| Bme1390I | CCNGG | 1 cut(s) | 778 |
| Bme18I | GGWCC | 1 cut(s) | 1024 |
| BmgT120I | GGNCC | 1 cut(s) | 1024 |
| BmrFI | CCNGG | 1 cut(s) | 778 |
| BmsI | GCATC | 2 cut(s) | 136, 777 |
| BmtI | GCTAGC | 1 cut(s) | 404 |
| Bpu10I | CCTNAGC | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 2 cut(s) | 106, 944 |
| BsaJI | CCNNGG | 1 cut(s) | 868 |
| BsaWI | WCCGGW | 1 cut(s) | 911 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 566 |
| Bse1I | ACTGG | 2 cut(s) | 393, 715 |
| BseBI | CCWGG | 1 cut(s) | 778 |
| BseDI | CCNNGG | 1 cut(s) | 868 |
| BseGI | GGATG | 3 cut(s) | 463, 838, 846 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 566 |
| BseMII | CTCAG | 6 cut(s) | 63, 287, 387, 739, 939, 984 |
| BseNI | ACTGG | 2 cut(s) | 393, 715 |
| BseRI | GAGGAG | 1 cut(s) | 197 |
| BseXI | GCAGC | 2 cut(s) | 214, 236 |
| BseYI | CCCAGC | 1 cut(s) | 307 |
| BshFI | GGCC | 1 cut(s) | 559 |
| BsiSI | CCGG | 1 cut(s) | 912 |
| BslFI | GGGAC | 1 cut(s) | 399 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 566 |
| BsmAI | GTCTC | 2 cut(s) | 548, 725 |
| BsmFI | GGGAC | 1 cut(s) | 399 |
| BsnI | GGCC | 1 cut(s) | 559 |
| Bsp143I | GATC | 1 cut(s) | 672 |
| BspACI | CCGC | 4 cut(s) | 40, 82, 208, 781 |
| BspANI | GGCC | 1 cut(s) | 559 |
| BspCNI | CTCAG | 6 cut(s) | 64, 286, 386, 738, 940, 985 |
| BspMAI | CTGCAG | 2 cut(s) | 69, 226 |
| BspOI | GCTAGC | 1 cut(s) | 404 |
| BspQI | GCTCTTC | 2 cut(s) | 612, 804 |
| BspTI | CTTAAG | 1 cut(s) | 1042 |
| BsrI | ACTGG | 2 cut(s) | 393, 715 |
| BssECI | CCNNGG | 1 cut(s) | 868 |
| BssMI | GATC | 1 cut(s) | 672 |
| BssT1I | CCWWGG | 1 cut(s) | 868 |
| Bst2UI | CCWGG | 1 cut(s) | 778 |
| Bst4CI | ACNGT | 1 cut(s) | 515 |
| Bst6I | CTCTTC | 3 cut(s) | 334, 612, 804 |
| BstAFI | CTTAAG | 1 cut(s) | 1042 |
| BstC8I | GCNNGC | 4 cut(s) | 242, 402, 603, 930 |
| BstDEI | CTNAG | 8 cut(s) | 72, 273, 297, 359, 373, 725, 948, 993 |
| BstF5I | GGATG | 3 cut(s) | 463, 838, 846 |
| BstH2I | RGCGCY | 1 cut(s) | 529 |
| BstHHI | GCGC | 1 cut(s) | 528 |
| BstKTI | GATC | 1 cut(s) | 675 |
| BstMAI | GTCTC | 2 cut(s) | 548, 725 |
| BstMBI | GATC | 1 cut(s) | 672 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 275, 787, 964 |
| BstNI | CCWGG | 1 cut(s) | 778 |
| BstSCI | CCNGG | 1 cut(s) | 776 |
| BstSFI | CTRYAG | 3 cut(s) | 65, 222, 742 |
| BstV1I | GCAGC | 2 cut(s) | 214, 236 |
| BsuRI | GGCC | 1 cut(s) | 559 |
| BtsCI | GGATG | 3 cut(s) | 463, 838, 846 |
| BtsI | GCAGTG | 2 cut(s) | 481, 669 |
| BtsIMutI | CAGTG | 2 cut(s) | 481, 669 |
| Cac8I | GCNNGC | 4 cut(s) | 242, 402, 603, 930 |
| CfoI | GCGC | 1 cut(s) | 528 |
| Cfr13I | GGNCC | 1 cut(s) | 1024 |
| Csp6I | GTAC | 2 cut(s) | 113, 379 |
| CviQI | GTAC | 2 cut(s) | 113, 379 |
| DdeI | CTNAG | 8 cut(s) | 72, 273, 297, 359, 373, 725, 948, 993 |
| DpnI | GATC | 1 cut(s) | 674 |
| DpnII | GATC | 1 cut(s) | 672 |
| Eam1104I | CTCTTC | 3 cut(s) | 334, 612, 804 |
| EarI | CTCTTC | 3 cut(s) | 334, 612, 804 |
| Eco130I | CCWWGG | 1 cut(s) | 868 |
| Eco47I | GGWCC | 1 cut(s) | 1024 |
| EcoRII | CCWGG | 1 cut(s) | 776 |
| EcoT14I | CCWWGG | 1 cut(s) | 868 |
| EcoT22I | ATGCAT | 1 cut(s) | 809 |
| ErhI | CCWWGG | 1 cut(s) | 868 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 102, 134, 1025, 1057 |
| FaqI | GGGAC | 1 cut(s) | 399 |
| FauI | CCCGC | 1 cut(s) | 774 |
| FauNDI | CATATG | 1 cut(s) | 562 |
| FbaI | TGATCA | 1 cut(s) | 672 |
| Fnu4HI | GCNGC | 4 cut(s) | 41, 209, 225, 228 |
| FokI | GGATG | 3 cut(s) | 470, 845, 853 |
| Fsp4HI | GCNGC | 4 cut(s) | 41, 209, 225, 228 |
| FspBI | CTAG | 7 cut(s) | 29, 401, 440, 494, 869, 902, 921 |
| GlaI | GCGC | 1 cut(s) | 527 |
| GluI | GCNGC | 4 cut(s) | 41, 209, 225, 228 |
| GsaI | CCCAGC | 1 cut(s) | 311 |
| HaeII | RGCGCY | 1 cut(s) | 529 |
| HaeIII | GGCC | 1 cut(s) | 559 |
| HapII | CCGG | 1 cut(s) | 912 |
| HhaI | GCGC | 1 cut(s) | 528 |
| Hin6I | GCGC | 1 cut(s) | 526 |
| HinP1I | GCGC | 1 cut(s) | 526 |
| HindIII | AAGCTT | 2 cut(s) | 599, 965 |
| HinfI | GANTC | 6 cut(s) | 88, 271, 367, 723, 917, 1051 |
| HpaII | CCGG | 1 cut(s) | 912 |
| Hpy166II | GTNNAC | 2 cut(s) | 667, 769 |
| Hpy188I | TCNGA | 3 cut(s) | 294, 376, 728 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 440, 545, 653, 961 |
| Hpy8I | GTNNAC | 2 cut(s) | 667, 769 |
| HpyAV | CCTTC | 1 cut(s) | 419 |
| HpyCH4III | ACNGT | 1 cut(s) | 515 |
| HpyCH4IV | ACGT | 2 cut(s) | 115, 419 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 275, 787, 964 |
| HpyF3I | CTNAG | 8 cut(s) | 72, 273, 297, 359, 373, 725, 948, 993 |
| HpySE526I | ACGT | 2 cut(s) | 115, 419 |
| HspAI | GCGC | 1 cut(s) | 526 |
| Ksp22I | TGATCA | 1 cut(s) | 672 |
| Kzo9I | GATC | 1 cut(s) | 672 |
| LguI | GCTCTTC | 2 cut(s) | 612, 804 |
| LmnI | GCTCC | 2 cut(s) | 818, 976 |
| Lsp1109I | GCAGC | 2 cut(s) | 214, 236 |
| LweI | GCATC | 2 cut(s) | 136, 777 |
| MaeI | CTAG | 7 cut(s) | 29, 401, 440, 494, 869, 902, 921 |
| MaeII | ACGT | 2 cut(s) | 115, 419 |
| MaeIII | GTNAC | 1 cut(s) | 988 |
| MalI | GATC | 1 cut(s) | 674 |
| MboI | GATC | 1 cut(s) | 672 |
| MboII | GAAGA | 7 cut(s) | 59, 200, 351, 492, 560, 599, 791 |
| MfeI | CAATTG | 1 cut(s) | 405 |
| MluCI | AATT | 8 cut(s) | 103, 283, 405, 620, 676, 896, 971, 1016 |
| MlyI | GAGTC | 4 cut(s) | 97, 265, 717, 926 |
| MmeI | TCCRAC | 1 cut(s) | 1002 |
| MnlI | CCTC | 8 cut(s) | 175, 178, 340, 549, 651, 758, 943, 988 |
| Mph1103I | ATGCAT | 1 cut(s) | 809 |
| MseI | TTAA | 7 cut(s) | 57, 102, 432, 846, 894, 969, 1043 |
| MspA1I | CMGCKG | 1 cut(s) | 227 |
| MspCI | CTTAAG | 1 cut(s) | 1042 |
| MspI | CCGG | 1 cut(s) | 912 |
| MspR9I | CCNGG | 1 cut(s) | 778 |
| MunI | CAATTG | 1 cut(s) | 405 |
| MvaI | CCWGG | 1 cut(s) | 778 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 275, 787, 964 |
| NdeI | CATATG | 1 cut(s) | 562 |
| NdeII | GATC | 1 cut(s) | 672 |
| NheI | GCTAGC | 1 cut(s) | 400 |
| NsiI | ATGCAT | 1 cut(s) | 809 |
| PciSI | GCTCTTC | 2 cut(s) | 612, 804 |
| PfeI | GAWTC | 2 cut(s) | 367, 1051 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 566 |
| PkrI | GCNGC | 4 cut(s) | 42, 210, 226, 229 |
| PleI | GAGTC | 4 cut(s) | 96, 265, 717, 925 |
| PpsI | GAGTC | 4 cut(s) | 96, 265, 717, 925 |
| Psp6I | CCWGG | 1 cut(s) | 776 |
| PspFI | CCCAGC | 1 cut(s) | 307 |
| PspGI | CCWGG | 1 cut(s) | 776 |
| PspPI | GGNCC | 1 cut(s) | 1024 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 973, 1005 |
| PstI | CTGCAG | 2 cut(s) | 69, 226 |
| PvuII | CAGCTG | 1 cut(s) | 227 |
| RsaI | GTAC | 2 cut(s) | 114, 380 |
| RsaNI | GTAC | 2 cut(s) | 113, 379 |
| SapI | GCTCTTC | 2 cut(s) | 612, 804 |
| SaqAI | TTAA | 7 cut(s) | 57, 102, 432, 846, 894, 969, 1043 |
| SatI | GCNGC | 4 cut(s) | 41, 209, 225, 228 |
| Sau3AI | GATC | 1 cut(s) | 672 |
| Sau96I | GGNCC | 1 cut(s) | 1024 |
| ScaI | AGTACT | 1 cut(s) | 380 |
| SchI | GAGTC | 4 cut(s) | 97, 265, 717, 926 |
| ScrFI | CCNGG | 1 cut(s) | 778 |
| SfaNI | GCATC | 2 cut(s) | 136, 777 |
| SfcI | CTRYAG | 3 cut(s) | 65, 222, 742 |
| SinI | GGWCC | 1 cut(s) | 1024 |
| SmlI | CTYRAG | 3 cut(s) | 85, 959, 1042 |
| SmoI | CTYRAG | 3 cut(s) | 85, 959, 1042 |
| Sse9I | AATT | 8 cut(s) | 103, 283, 405, 620, 676, 896, 971, 1016 |
| SsiI | CCGC | 4 cut(s) | 40, 82, 208, 781 |
| SspI | AATATT | 1 cut(s) | 55 |
| SspMI | CTAG | 7 cut(s) | 29, 401, 440, 494, 869, 902, 921 |
| StyD4I | CCNGG | 1 cut(s) | 776 |
| StyI | CCWWGG | 1 cut(s) | 868 |
| TaaI | ACNGT | 1 cut(s) | 515 |
| TaiI | ACGT | 2 cut(s) | 118, 422 |
| TaqI | TCGA | 2 cut(s) | 5, 546 |
| TasI | AATT | 8 cut(s) | 103, 283, 405, 620, 676, 896, 971, 1016 |
| TatI | WGTACW | 1 cut(s) | 378 |
| TauI | GCSGC | 2 cut(s) | 43, 211 |
| TfiI | GAWTC | 2 cut(s) | 367, 1051 |
| Tru1I | TTAA | 7 cut(s) | 57, 102, 432, 846, 894, 969, 1043 |
| Tru9I | TTAA | 7 cut(s) | 57, 102, 432, 846, 894, 969, 1043 |
| TscAI | CASTG | 2 cut(s) | 481, 669 |
| TseI | GCWGC | 2 cut(s) | 224, 227 |
| TspDTI | ATGAA | 6 cut(s) | 60, 174, 228, 269, 438, 476 |
| TspRI | CASTG | 2 cut(s) | 481, 669 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 566 |
| Vha464I | CTTAAG | 1 cut(s) | 1042 |
| VpaK11BI | GGWCC | 1 cut(s) | 1024 |
| XapI | RAATTY | 2 cut(s) | 283, 896 |
| XbaI | TCTAGA | 2 cut(s) | 28, 439 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 626 |
| XmaJI | CCTAGG | 1 cut(s) | 868 |
| XspI | CTAG | 7 cut(s) | 29, 401, 440, 494, 869, 902, 921 |
| ZrmI | AGTACT | 1 cut(s) | 380 |
| Zsp2I | ATGCAT | 1 cut(s) | 809 |