ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 88 - 154 | 1e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 19 |
| AciI | CCGC | 2 cut(s) | 507, 528 |
| AclWI | GGATC | 1 cut(s) | 239 |
| AcsI | RAATTY | 1 cut(s) | 395 |
| AfaI | GTAC | 2 cut(s) | 248, 521 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 516 |
| AflIII | ACRYGT | 1 cut(s) | 243 |
| AgsI | TTSAA | 3 cut(s) | 167, 395, 434 |
| AjnI | CCWGG | 1 cut(s) | 112 |
| AluBI | AGCT | 4 cut(s) | 28, 191, 257, 278 |
| AluI | AGCT | 4 cut(s) | 28, 191, 257, 278 |
| AlwI | GGATC | 1 cut(s) | 239 |
| ApeKI | GCWGC | 1 cut(s) | 278 |
| ApoI | RAATTY | 1 cut(s) | 395 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 2 cut(s) | 128, 272 |
| AsuC2I | CCSGG | 1 cut(s) | 270 |
| AvaII | GGWCC | 2 cut(s) | 128, 272 |
| BbsI | GAAGAC | 1 cut(s) | 187 |
| BbvI | GCAGC | 1 cut(s) | 265 |
| BccI | CCATC | 2 cut(s) | 408, 541 |
| BceAI | ACGGC | 1 cut(s) | 570 |
| BciT130I | CCWGG | 1 cut(s) | 114 |
| BciVI | GTATCC | 1 cut(s) | 110 |
| BcnI | CCSGG | 1 cut(s) | 270 |
| BfuI | GTATCC | 1 cut(s) | 110 |
| BisI | GCNGC | 1 cut(s) | 279 |
| BlsI | GCNGC | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 2 cut(s) | 114, 270 |
| Bme18I | GGWCC | 2 cut(s) | 128, 272 |
| BmgT120I | GGNCC | 2 cut(s) | 128, 272 |
| BmrFI | CCNGG | 2 cut(s) | 114, 270 |
| BmsI | GCATC | 1 cut(s) | 220 |
| BpiI | GAAGAC | 1 cut(s) | 187 |
| Bpu10I | CCTNAGC | 2 cut(s) | 258, 557 |
| BpuMI | CCSGG | 1 cut(s) | 270 |
| BsaAI | YACGTR | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 2 cut(s) | 227, 268 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 529, 559 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 516 |
| Bse1I | ACTGG | 1 cut(s) | 447 |
| BseBI | CCWGG | 1 cut(s) | 114 |
| BseDI | CCNNGG | 2 cut(s) | 227, 268 |
| BseGI | GGATG | 5 cut(s) | 211, 307, 419, 500, 568 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 516 |
| BseNI | ACTGG | 1 cut(s) | 447 |
| BseRI | GAGGAG | 1 cut(s) | 183 |
| BseXI | GCAGC | 1 cut(s) | 265 |
| Bsh1236I | CGCG | 1 cut(s) | 19 |
| BsiSI | CCGG | 1 cut(s) | 270 |
| BsiWI | CGTACG | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 516 |
| Bsp143I | GATC | 1 cut(s) | 231 |
| Bsp19I | CCATGG | 1 cut(s) | 227 |
| BspACI | CCGC | 2 cut(s) | 507, 528 |
| BspFNI | CGCG | 1 cut(s) | 19 |
| BspPI | GGATC | 1 cut(s) | 239 |
| BsrI | ACTGG | 1 cut(s) | 447 |
| BssECI | CCNNGG | 2 cut(s) | 227, 268 |
| BssMI | GATC | 1 cut(s) | 231 |
| BssT1I | CCWWGG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 1 cut(s) | 114 |
| Bst4CI | ACNGT | 1 cut(s) | 469 |
| BstBAI | YACGTR | 1 cut(s) | 246 |
| BstDEI | CTNAG | 4 cut(s) | 253, 258, 511, 557 |
| BstDSI | CCRYGG | 1 cut(s) | 227 |
| BstEII | GGTNACC | 1 cut(s) | 263 |
| BstF5I | GGATG | 5 cut(s) | 211, 307, 419, 500, 568 |
| BstFNI | CGCG | 1 cut(s) | 19 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 1 cut(s) | 234 |
| BstMBI | GATC | 1 cut(s) | 231 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 25 |
| BstNI | CCWGG | 1 cut(s) | 114 |
| BstNSI | RCATGY | 1 cut(s) | 285 |
| BstPI | GGTNACC | 1 cut(s) | 263 |
| BstSCI | CCNGG | 2 cut(s) | 112, 268 |
| BstUI | CGCG | 1 cut(s) | 19 |
| BstV1I | GCAGC | 1 cut(s) | 265 |
| BstV2I | GAAGAC | 1 cut(s) | 187 |
| BsuI | GTATCC | 1 cut(s) | 110 |
| BtgI | CCRYGG | 1 cut(s) | 227 |
| BtsCI | GGATG | 5 cut(s) | 211, 307, 419, 500, 568 |
| BtsIMutI | CAGTG | 2 cut(s) | 454, 465 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 2 cut(s) | 128, 272 |
| Csp6I | GTAC | 2 cut(s) | 247, 520 |
| CviAII | CATG | 5 cut(s) | 84, 228, 282, 308, 490 |
| CviJI | RGCY | 6 cut(s) | 28, 88, 191, 257, 278, 430 |
| CviKI_1 | RGCY | 6 cut(s) | 28, 88, 191, 257, 278, 430 |
| CviQI | GTAC | 2 cut(s) | 247, 520 |
| DdeI | CTNAG | 4 cut(s) | 253, 258, 511, 557 |
| DpnI | GATC | 1 cut(s) | 233 |
| DpnII | GATC | 1 cut(s) | 231 |
| Eco130I | CCWWGG | 1 cut(s) | 227 |
| Eco47I | GGWCC | 2 cut(s) | 128, 272 |
| Eco91I | GGTNACC | 1 cut(s) | 263 |
| EcoO65I | GGTNACC | 1 cut(s) | 263 |
| EcoRII | CCWGG | 1 cut(s) | 112 |
| EcoT14I | CCWWGG | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 227 |
| FaeI | CATG | 5 cut(s) | 87, 231, 285, 311, 493 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 17, 49, 72, 104 |
| FatI | CATG | 5 cut(s) | 83, 227, 281, 307, 489 |
| FauNDI | CATATG | 1 cut(s) | 425 |
| Fnu4HI | GCNGC | 1 cut(s) | 279 |
| FokI | GGATG | 5 cut(s) | 198, 314, 426, 487, 575 |
| Fsp4HI | GCNGC | 1 cut(s) | 279 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 279 |
| HapII | CCGG | 1 cut(s) | 270 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1II | CATG | 5 cut(s) | 87, 231, 285, 311, 493 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HincII | GTYRAC | 1 cut(s) | 483 |
| HindII | GTYRAC | 1 cut(s) | 483 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 3 cut(s) | 46, 137, 440 |
| HpaII | CCGG | 1 cut(s) | 270 |
| Hpy166II | GTNNAC | 1 cut(s) | 483 |
| Hpy188III | TCNNGA | 1 cut(s) | 177 |
| Hpy8I | GTNNAC | 1 cut(s) | 483 |
| HpyAV | CCTTC | 1 cut(s) | 60 |
| HpyCH4III | ACNGT | 1 cut(s) | 469 |
| HpyCH4IV | ACGT | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 25 |
| HpyF3I | CTNAG | 4 cut(s) | 253, 258, 511, 557 |
| HpySE526I | ACGT | 1 cut(s) | 245 |
| Hsp92II | CATG | 5 cut(s) | 87, 231, 285, 311, 493 |
| HspAI | GCGC | 1 cut(s) | 17 |
| Kzo9I | GATC | 1 cut(s) | 231 |
| LmnI | GCTCC | 3 cut(s) | 77, 196, 229 |
| LpnPI | CCDG | 5 cut(s) | 99, 126, 283, 288, 460 |
| Lsp1109I | GCAGC | 1 cut(s) | 265 |
| LweI | GCATC | 1 cut(s) | 220 |
| MaeII | ACGT | 1 cut(s) | 245 |
| MaeIII | GTNAC | 3 cut(s) | 20, 263, 437 |
| MalI | GATC | 1 cut(s) | 233 |
| MboI | GATC | 1 cut(s) | 231 |
| MboII | GAAGA | 1 cut(s) | 192 |
| MfeI | CAATTG | 1 cut(s) | 219 |
| MluCI | AATT | 3 cut(s) | 6, 219, 395 |
| MlyI | GAGTC | 1 cut(s) | 434 |
| MmeI | TCCRAC | 1 cut(s) | 114 |
| MnlI | CCTC | 1 cut(s) | 204 |
| MseI | TTAA | 1 cut(s) | 78 |
| MspA1I | CMGCKG | 1 cut(s) | 278 |
| MspI | CCGG | 1 cut(s) | 270 |
| MspR9I | CCNGG | 2 cut(s) | 114, 270 |
| MunI | CAATTG | 1 cut(s) | 219 |
| MvaI | CCWGG | 1 cut(s) | 114 |
| MvnI | CGCG | 1 cut(s) | 19 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 25 |
| NciI | CCSGG | 1 cut(s) | 270 |
| NcoI | CCATGG | 1 cut(s) | 227 |
| NdeI | CATATG | 1 cut(s) | 425 |
| NdeII | GATC | 1 cut(s) | 231 |
| NlaIII | CATG | 5 cut(s) | 87, 231, 285, 311, 493 |
| NmuCI | GTSAC | 1 cut(s) | 437 |
| NspI | RCATGY | 1 cut(s) | 285 |
| PfeI | GAWTC | 2 cut(s) | 46, 137 |
| Pfl23II | CGTACG | 1 cut(s) | 246 |
| PflFI | GACNNNGTC | 1 cut(s) | 342 |
| PkrI | GCNGC | 1 cut(s) | 280 |
| PleI | GAGTC | 1 cut(s) | 434 |
| PpsI | GAGTC | 1 cut(s) | 434 |
| Ppu21I | YACGTR | 1 cut(s) | 246 |
| Psp6I | CCWGG | 1 cut(s) | 112 |
| PspEI | GGTNACC | 1 cut(s) | 263 |
| PspGI | CCWGG | 1 cut(s) | 112 |
| PspLI | CGTACG | 1 cut(s) | 246 |
| PspPI | GGNCC | 2 cut(s) | 128, 272 |
| PsyI | GACNNNGTC | 1 cut(s) | 342 |
| PvuII | CAGCTG | 1 cut(s) | 278 |
| RsaI | GTAC | 2 cut(s) | 248, 521 |
| RsaNI | GTAC | 2 cut(s) | 247, 520 |
| SaqAI | TTAA | 1 cut(s) | 78 |
| SatI | GCNGC | 1 cut(s) | 279 |
| Sau3AI | GATC | 1 cut(s) | 231 |
| Sau96I | GGNCC | 2 cut(s) | 128, 272 |
| SchI | GAGTC | 1 cut(s) | 434 |
| ScrFI | CCNGG | 2 cut(s) | 114, 270 |
| SetI | ASST | 6 cut(s) | 30, 193, 248, 259, 280, 482 |
| SfaNI | GCATC | 1 cut(s) | 220 |
| SinI | GGWCC | 2 cut(s) | 128, 272 |
| Sse9I | AATT | 3 cut(s) | 6, 219, 395 |
| SsiI | CCGC | 2 cut(s) | 507, 528 |
| StyD4I | CCNGG | 2 cut(s) | 112, 268 |
| StyI | CCWWGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 1 cut(s) | 469 |
| TaiI | ACGT | 1 cut(s) | 248 |
| TaqI | TCGA | 2 cut(s) | 91, 349 |
| TasI | AATT | 3 cut(s) | 6, 219, 395 |
| TfiI | GAWTC | 2 cut(s) | 46, 137 |
| Tru1I | TTAA | 1 cut(s) | 78 |
| Tru9I | TTAA | 1 cut(s) | 78 |
| TscAI | CASTG | 2 cut(s) | 454, 472 |
| TseFI | GTSAC | 1 cut(s) | 437 |
| TseI | GCWGC | 1 cut(s) | 278 |
| Tsp45I | GTSAC | 1 cut(s) | 437 |
| TspGWI | ACGGA | 2 cut(s) | 50, 120 |
| TspRI | CASTG | 2 cut(s) | 454, 472 |
| Tth111I | GACNNNGTC | 1 cut(s) | 342 |
| VpaK11BI | GGWCC | 2 cut(s) | 128, 272 |
| XapI | RAATTY | 1 cut(s) | 395 |
| XceI | RCATGY | 1 cut(s) | 285 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 225 |