Rorug01G0400400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000031
Physical Location & Seq
Reverse (-)
50907435 .. 50909949
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0400400.1

Sequence Viewer

Length: 1725 bp
ATGGAAGTACTCAACAGCTCCATTTTCCTTTTAGGCCTTTGCCTCCTCTTGGCTTCATCGACAATATCATCGGCAGAACCCAAAACCCACAACCATGAATTTGTTATTCAAGCAACACCAGTGAAGAGGCTGTGCAAAACTCAGAATAGCATCACCGTGAACGGACAGTTACCCGGACCAACCTTGGAAGTTAACAATGGCGACACTCTAGTCATCAAGGTCACGAACAAAGCTCGATACAACGTGACTATTCACTGGCATGGAATTCGCCAAATGAGAACTGGATGGGCTGATGGGCCAGAATTTGTAACTCAGTGCCCGATTAGGCCCGGAGGAAGCTACACTTACCGGTTTACAATGCAAGGTCAAGAAGGTACACTGTGGTGGCACGCTCACAGCTCTTGGCTTAGAGCCACTGTTTATGGAGCACTTATTATTCATCCTAAACAAGGAGACTCGTATCCATTCCCTAAACCAAAGCGCGAGACAACACTTCTTCTCGGTGAGTGGTGGAATGCAAACCCCGTCGACGTGGTGAGGGAAGCAACCAGAACCGGAGCAGCTCCAAATGTTTCTGATGCTTACACAATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCGAGCAAAGACACAGTGATAGTTCCCATAGACTCCGGCGAAACCAACCTCCTCCGAGTCATCAACGCCGCTCTTAACCAACAGCTTTTCTTCACCGTCGCCAACCATAAACTCACCGTTGTCGGTGCCGACGCCTCCTACAGCAAGCCCTTCACCACCACCACCCTCATGCTAGGCCCCGGCCAGACCACCGACGTTTTAATCACCGGCGACCAGCCACCTTCTCGGTACTACATGGCAGCGCGTGCCTATTTCAGCGCACAAAATGCAGCATTCGACAACACCACCACCACCGCCATTCTCGAATACAAGTCTGCTCCATGCAGCAACTGCAAAAACGGCCCATCAACTAAGCCCGTCATGCCCCCACTCCCTGCTTACAACGACACTAACACCTCCTCCGCCTTCACCACCAGCTTCCGAAGCCCTAGAAAGGTCGAAGTCCCCACCGAAATCGACGAGAACCTCTTCTTCACAGTCGGCCTCGGACTCAACAACTGCCCCAAAAATTTCCCCTCCAGTAGGTGCCAAGGCCCTAACGGCACGCGCTTCACCGCCAGCATGAACAATGTCTCTTTTGTGCTACCAAACAACATCTCCATCCTTCAAGCTTACCAGCAGAATATCCCCGGAGTTGTCACTTCTGATTTCCCGGCAAACCCGCCGCTGCAGTTTGACTACACCGGCAACGTGAGCCAATCACTCTGGCAGCCCAACTCCGGGACCAAGGGATACCCATTGAAATACGGATCAAGAGTCCAGGTGGTGTTGCAAGACACTAGTATTGTCACACCCGAAAACCACCCGATTCATCTCCACGGATACGATTTCTACGTCCTTGCAGAAGGGTTTGGTAATTTCAATGCCAAGACTGACACTAAAAAATTCAACCTGGTTGATCCTCCTATGAGGAACACAGTTGCGCTACCAGTGAATGGTTGGGCTGTCATCAGATTTGTGGCTGACAATCCAGGTGCTTGGATAATGCATTGTCACTTGGATGTTCACATCAACTGGGGTTTGGCTATGGTATTCCTGGTGGATAACGGAGTCGGGAAGCTCCAGTCAATCGAGTCTCCACCGTTGGATCTTCCTCCGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

574

Amino Acids

63.06

Weight (kDa)

7.97

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 150 7.1e-45 Multicopper oxidase
Cu-oxidase PF00394 162 - 312 1.6e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 423 - 556 3.1e-42 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05755
fragaria_vesca FvH4_1g13571 FvH4_2g06951 FvH4_2g09612 FvH4_3g24991 FvH4_3g39131 FvH4_4g01331 FvH4_5g11071 FvH4_5g22144 FvH4_5g22144 FvH4_5g27541 FvH4_5g38601 FvH4_6g09211 FvH4_6g17161 FvH4_6g30101 FvH4_6g30102 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g51131 FvH4_7g28851
malus_domestica MD02G1021900.v1.1 MD02G1050700.v1.1 MD02G1314000.v1.1 MD05G1244100.v1.1 MD07G1021300.v1.1 MD09G1113200.v1.1 MD09G1113300.v1.1 MD13G1019000.v1.1 MD17G1103400.v1.1
prunus_persica Prupe.1G484600_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.4G283800_v2.0.a1
pyrus_communis pycom01g13080 pycom03g05530 pycom05g09360 pycom05g20240 pycom06g06350 pycom06g14660 pycom09g03750 pycom13g22930 pycom14g00800 pycom15g35930 pycom17g09770 pycom17g25010
rosa_chinensis RchiOBHm_Chr1g0316991 RchiOBHm_Chr1g0321411 RchiOBHm_Chr1g0341061 RchiOBHm_Chr1g0352021 RchiOBHm_Chr1g0357231 RchiOBHm_Chr1g0361641 RchiOBHm_Chr1g0379151 RchiOBHm_Chr2g0084861 RchiOBHm_Chr2g0092021 RchiOBHm_Chr2g0102721 RchiOBHm_Chr2g0119161 RchiOBHm_Chr2g0120021 RchiOBHm_Chr2g0120031 RchiOBHm_Chr2g0120451 RchiOBHm_Chr2g0129631 RchiOBHm_Chr2g0133661 RchiOBHm_Chr2g0140031 RchiOBHm_Chr2g0154361 RchiOBHm_Chr2g0158311 RchiOBHm_Chr2g0160431 RchiOBHm_Chr2g0167951 RchiOBHm_Chr2g0168801 RchiOBHm_Chr3g0451531 RchiOBHm_Chr3g0453641 RchiOBHm_Chr3g0453831 RchiOBHm_Chr3g0455401 RchiOBHm_Chr3g0457461 RchiOBHm_Chr3g0459251 RchiOBHm_Chr3g0462451 RchiOBHm_Chr3g0465511 RchiOBHm_Chr3g0466111 RchiOBHm_Chr3g0469201 RchiOBHm_Chr3g0472791 RchiOBHm_Chr3g0472841 RchiOBHm_Chr4g0391691 RchiOBHm_Chr4g0393351 RchiOBHm_Chr4g0395061 RchiOBHm_Chr4g0395191 RchiOBHm_Chr4g0397541 RchiOBHm_Chr4g0402261 RchiOBHm_Chr4g0409421 RchiOBHm_Chr4g0417481 RchiOBHm_Chr4g0428291 RchiOBHm_Chr4g0434281 RchiOBHm_Chr4g0437231 RchiOBHm_Chr4g0439261 RchiOBHm_Chr5g0000531 RchiOBHm_Chr5g0016091 RchiOBHm_Chr5g0018801 RchiOBHm_Chr5g0026401 RchiOBHm_Chr5g0051821 RchiOBHm_Chr5g0062261 RchiOBHm_Chr5g0070711 RchiOBHm_Chr5g0074731 RchiOBHm_Chr5g0077831 RchiOBHm_Chr6g0251621 RchiOBHm_Chr6g0253181 RchiOBHm_Chr6g0258241 RchiOBHm_Chr6g0259301 RchiOBHm_Chr6g0263381 RchiOBHm_Chr6g0264461 RchiOBHm_Chr6g0278601 RchiOBHm_Chr6g0299951 RchiOBHm_Chr7g0184971 RchiOBHm_Chr7g0185631 RchiOBHm_Chr7g0200601 RchiOBHm_Chr7g0206171 RchiOBHm_Chr7g0222341 RchiOBHm_Chr7g0237631
rosa_laevigata RLG00000012173 RLG00000021075
rosa_multiflora Rmu_co8065174.1_g000001 Rmu_co8074360.1_g000001 Rmu_co8095164.1_g000001 Rmu_co8204978.1_g000001 Rmu_co8329721.1_g000001 Rmu_co8347171.1_g000001 Rmu_co8395661.1_g000001 Rmu_co8466967.1_g000001 Rmu_sc0000030.1_g000008 Rmu_sc0000290.1_g000015 Rmu_sc0000294.1_g000012 Rmu_sc0000319.1_g000020 Rmu_sc0000418.1_g000014 Rmu_sc0000423.1_g000010 Rmu_sc0000427.1_g000013 Rmu_sc0000430.1_g000011 Rmu_sc0000487.1_g000037 Rmu_sc0000765.1_g000028 Rmu_sc0000770.1_g000037 Rmu_sc0000785.1_g000011 Rmu_sc0000811.1_g000011 Rmu_sc0000848.1_g000004 Rmu_sc0000897.1_g000007 Rmu_sc0000955.1_g000014 Rmu_sc0001004.1_g000019 Rmu_sc0001010.1_g000068 Rmu_sc0001021.1_g000008 Rmu_sc0001084.1_g000013 Rmu_sc0001111.1_g000002 Rmu_sc0001190.1_g000015 Rmu_sc0001308.1_g000013 Rmu_sc0001398.1_g000010 Rmu_sc0001680.1_g000005 Rmu_sc0001926.1_g000017 Rmu_sc0001942.1_g000074 Rmu_sc0002068.1_g000010 Rmu_sc0002113.1_g000019 Rmu_sc0002299.1_g000032 Rmu_sc0002531.1_g000026 Rmu_sc0002549.1_g000005 Rmu_sc0002634.1_g000001 Rmu_sc0002640.1_g000014 Rmu_sc0002831.1_g000005 Rmu_sc0002848.1_g000018 Rmu_sc0003005.1_g000027 Rmu_sc0003076.1_g000012 Rmu_sc0003124.1_g000001 Rmu_sc0003143.1_g000004 Rmu_sc0003143.1_g000005 Rmu_sc0003143.1_g000006 Rmu_sc0003302.1_g000009 Rmu_sc0003368.1_g000035 Rmu_sc0003462.1_g000001 Rmu_sc0003692.1_g000016 Rmu_sc0003855.1_g000007 Rmu_sc0003858.1_g000008 Rmu_sc0004277.1_g000031 Rmu_sc0004732.1_g000013 Rmu_sc0004748.1_g000005 Rmu_sc0005091.1_g000024 Rmu_sc0005124.1_g000001 Rmu_sc0005167.1_g000001 Rmu_sc0005242.1_g000003 Rmu_sc0005486.1_g000005 Rmu_sc0005597.1_g000008 Rmu_sc0005653.1_g000004 Rmu_sc0006080.1_g000016 Rmu_sc0006371.1_g000003 Rmu_sc0006415.1_g000001 Rmu_sc0006522.1_g000003 Rmu_sc0006596.1_g000007 Rmu_sc0006991.1_g000005 Rmu_sc0007070.1_g000004 Rmu_sc0007737.1_g000005 Rmu_sc0007856.1_g000001 Rmu_sc0008241.1_g000001 Rmu_sc0008393.1_g000006 Rmu_sc0008563.1_g000008 Rmu_sc0008904.1_g000006 Rmu_sc0010313.1_g000014 Rmu_sc0010693.1_g000002 Rmu_sc0010917.1_g000011 Rmu_sc0011232.1_g000003 Rmu_sc0011978.1_g000005 Rmu_sc0012782.1_g000003 Rmu_sc0013716.1_g000002 Rmu_sc0015429.1_g000002 Rmu_sc0015649.1_g000014 Rmu_sc0021955.1_g000004 Rmu_sc0024117.1_g000001 Rmu_sc0024816.1_g000001 Rmu_sc0024816.1_g000006 Rmu_sc0026593.1_g000003 Rmu_sc0028245.1_g000001 Rmu_sc0029783.1_g000006 Rmu_sc0030817.1_g000001 Rmu_sc0031096.1_g000001 Rmu_sc0034014.1_g000001 Rmu_sc0036569.1_g000001 Rmu_sc0039034.1_g000001 Rmu_ssc0000004.1_g000015 Rmu_ssc0000053.1_g000002 Rmu_ssc0000126.1_g000069 Rmu_ssc0000211.1_g000020 Rmu_ssc0000295.1_g000005 Rmu_ssc0000359.1_g000057 Rmu_ssc0000385.1_g000011 Rmu_ssc0000416.1_g000004 Rmu_ssc0000434.1_g000018
rosa_roxburghii Rroxscaffold_159G00432920 Rroxscaffold_2G00091500 Rroxscaffold_2G00123510 Rroxscaffold_2G00124730 Rroxscaffold_2G00126030 Rroxscaffold_2G00138160 Rroxscaffold_2G00153260 Rroxscaffold_3G00224470 Rroxscaffold_3G00244670 Rroxscaffold_3G00261920 Rroxscaffold_3G00264150 Rroxscaffold_3G00270420 Rroxscaffold_4G00285150 Rroxscaffold_4G00299830 Rroxscaffold_4G00311290 Rroxscaffold_4G00323970 Rroxscaffold_5G00374550 Rroxscaffold_6G00427060 Rroxscaffold_7G00169160 Rroxscaffold_7G00174970
rosa_rugosa Rorug01G0012500 Rorug01G0046200 Rorug01G0118800 Rorug01G0120200 Rorug01G0135400.1 Rorug01G0174200 Rorug01G0204600 Rorug01G0253500 Rorug01G0290500 Rorug01G0290800 Rorug01G0312100 Rorug01G0333700 Rorug01G0339600 Rorug01G0377800 Rorug01G0400400 Rorug01G0402200 Rorug01G0410700 Rorug01G0431400 Rorug02G0011900 Rorug02G0012500 Rorug02G0022300 Rorug02G0062400 Rorug02G0085300 Rorug02G0091800 Rorug02G0104500 Rorug02G0125400 Rorug02G0131000 Rorug02G0147300 Rorug02G0171000 Rorug02G0181500 Rorug02G0196900 Rorug02G0207200 Rorug02G0226600 Rorug02G0241300 Rorug02G0274300 Rorug02G0280600 Rorug02G0280800 Rorug02G0304600 Rorug02G0304700 Rorug02G0338800 Rorug02G0375800 Rorug02G0379300 Rorug02G0379400 Rorug02G0447600 Rorug02G0459900 Rorug02G0467200 Rorug02G0535400 Rorug03G0072300 Rorug03G0218900 Rorug03G0223700 Rorug03G0231500 Rorug03G0257200 Rorug03G0257300 Rorug03G0257400 Rorug03G0265700 Rorug03G0290200 Rorug03G0291300 Rorug03G0311000 Rorug03G0326900 Rorug03G0332700 Rorug03G0352000 Rorug03G0369700.1 Rorug04G0014000 Rorug04G0014500 Rorug04G0124100 Rorug04G0142100 Rorug04G0151400 Rorug04G0160700 Rorug04G0186400 Rorug04G0227600 Rorug04G0253800 Rorug04G0274400 Rorug04G0274600 Rorug04G0295600 Rorug04G0302000 Rorug04G0320600 Rorug04G0331300 Rorug04G0352200 Rorug04G0407000 Rorug04G0430300 Rorug04G0443000 Rorug04G0446400 Rorug04G0459000 Rorug05G0042400 Rorug05G0042500 Rorug05G0064900 Rorug05G0074300 Rorug05G0097700 Rorug05G0102300 Rorug05G0102300 Rorug05G0123700 Rorug05G0145800 Rorug05G0152900 Rorug05G0175900 Rorug05G0182100 Rorug05G0196000 Rorug05G0207000 Rorug05G0212800 Rorug05G0226400 Rorug05G0241500 Rorug05G0264800.1 Rorug05G0269600 Rorug05G0298200 Rorug05G0304300 Rorug05G0344300 Rorug05G0382300 Rorug05G0392300.1 Rorug05G0427900 Rorug05G0433500 Rorug05G0452700 Rorug05G0464600 Rorug05G0475800 Rorug05G0488600 Rorug05G0493000 Rorug05G0504800 Rorug05G0505500.1 Rorug05G0508400 Rorug05G0545800 Rorug05G0587000 Rorug05G0591100.1 Rorug06G0013200 Rorug06G0037700 Rorug06G0098200 Rorug06G0184500 Rorug06G0185300 Rorug06G0188200 Rorug06G0208300 Rorug06G0212900 Rorug06G0251500 Rorug06G0328000 Rorug06G0366100 Rorug06G0367400 Rorug06G0371200 Rorug06G0393500 Rorug06G0423000 Rorug06G0440500 Rorug06G0445400 Rorug06G0451700 Rorug06G0479400 Rorug06G0479500 Rorug06G0479600 Rorug06G0479700 Rorug06G0479800 Rorug06G0483100 Rorug07G0001200 Rorug07G0005200 Rorug07G0068600 Rorug07G0109300 Rorug07G0115500 Rorug07G0117000 Rorug07G0123500 Rorug07G0128000 Rorug07G0128100 Rorug07G0225500 Rorug07G0280200 Rorug07G0317300
rosa_samantha Rh1AG251400 Rh1BG133300 Rh1CG079900 Rh1CG235600 Rh1DG168000 Rh2AG533100 Rh2BG546900 Rh2CG517000 Rh2DG237900 Rh2DG555900 Rh3CG293400 Rh4AG419800 Rh4BG306300 Rh4CG446100 Rh5AG268900 Rh5AG282600 Rh5BG006600 Rh5BG345700 Rh5CG468100 Rh6CG190700 Rh6DG111900 Rh7BG172200 Rh7BG412200
rosa_wichuraiana Rw0G003620 Rw0G004000 Rw0G011770 Rw0G019070 Rw0G020070 Rw1G002990 Rw1G003550 Rw1G003860 Rw1G005930 Rw1G018430 Rw1G021160 Rw1G023820 Rw1G032700 Rw1G035790 Rw1G036160 Rw1G038660 Rw1G039380 Rw2G016120 Rw2G018680 Rw2G026860 Rw2G028670 Rw2G040870 Rw2G041040 Rw2G041410 Rw2G044140 Rw2G047570 Rw3G019760 Rw4G031020 Rw5G003700 Rw5G004830 Rw5G037470 Rw5G047400 Rw6G020150 Rw6G024010 Rw6G026600 Rw7G002480 Rw7G004430 Rw7G011870 Rw7G035520 Rw7G041260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB1I GGYRCC 2 cut(s) 746, 1146
AccB7I CCANNNNNTGG 1 cut(s) 1556
AccBSI CCGCTC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 528
AccII CGCG 3 cut(s) 483, 865, 1168
AciI CCGC 6 cut(s) 690, 915, 1023, 1176, 1283, 1286
AclWI GGATC 3 cut(s) 1378, 1514, 1716
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 5 cut(s) 98, 264, 302, 1129, 1505
AcyI GRCGYC 1 cut(s) 753
AfaI GTAC 3 cut(s) 9, 376, 851
AfiI CCNNNNNNNGG 7 cut(s) 49, 449, 1054, 1143, 1340, 1341, 1556
AgeI ACCGGT 1 cut(s) 348
AgsI TTSAA 5 cut(s) 110, 1229, 1363, 1483, 1510
AhlI ACTAGT 1 cut(s) 1400
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 5 cut(s) 601, 1380, 1512, 1591, 1656
AleI CACNNNNGTG 1 cut(s) 382
AluBI AGCT 9 cut(s) 18, 233, 339, 399, 563, 706, 1038, 1232, 1681
AluI AGCT 9 cut(s) 18, 233, 339, 399, 563, 706, 1038, 1232, 1681
Alw21I GWGCWC 2 cut(s) 430, 623
Alw26I GTCTC 4 cut(s) 447, 479, 1198, 1701
AlwI GGATC 3 cut(s) 1378, 1514, 1716
AlwNI CAGNNNCTG 1 cut(s) 951
Ama87I CYCGRG 1 cut(s) 622
AoxI GGCC 8 cut(s) 34, 296, 326, 796, 802, 961, 1102, 1153
ApeKI GCWGC 6 cut(s) 560, 860, 890, 945, 1288, 1330
ApoI RAATTY 5 cut(s) 98, 264, 302, 1129, 1505
AsiGI ACCGGT 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 1088
AspLEI GCGC 5 cut(s) 483, 865, 881, 1170, 1546
AspS9I GGNCC 7 cut(s) 176, 296, 327, 797, 962, 1154, 1344
AsuC2I CCSGG 6 cut(s) 174, 330, 801, 1251, 1274, 1342
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 2 cut(s) 176, 1344
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 2 cut(s) 746, 1146
Bbv12I GWGCWC 2 cut(s) 430, 623
BbvI GCAGC 6 cut(s) 572, 872, 902, 957, 1275, 1342
BccI CCATC 4 cut(s) 279, 287, 973, 1229
BceAI ACGGC 2 cut(s) 976, 1177
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 5 cut(s) 603, 1382, 1514, 1593, 1658
BciVI GTATCC 3 cut(s) 471, 1346, 1436
BcnI CCSGG 6 cut(s) 174, 330, 801, 1251, 1274, 1342
BcoDI GTCTC 4 cut(s) 447, 479, 1198, 1701
BcuI ACTAGT 1 cut(s) 1400
BfaI CTAG 4 cut(s) 209, 794, 1050, 1401
BfmI CTRYAG 2 cut(s) 760, 1289
BfuI GTATCC 3 cut(s) 471, 1346, 1436
BglI GCCNNNNNGGC 1 cut(s) 1161
BisI GCNGC 8 cut(s) 561, 690, 861, 891, 946, 1286, 1289, 1331
BlsI GCNGC 8 cut(s) 562, 691, 862, 892, 947, 1287, 1290, 1332
BmcAI AGTACT 1 cut(s) 9
Bme18I GGWCC 2 cut(s) 176, 1344
BmeT110I CYCGRG 1 cut(s) 622
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 7 cut(s) 176, 296, 327, 797, 962, 1154, 1344
BmiI GGNNCC 4 cut(s) 748, 799, 1148, 1345
BmrI ACTGGG 1 cut(s) 1645
BmsI GCATC 2 cut(s) 159, 568
BmuI ACTGGG 1 cut(s) 1645
BpmI CTGGAG 2 cut(s) 1123, 1667
BpuMI CCSGG 6 cut(s) 174, 330, 801, 1251, 1274, 1342
BsaHI GRCGYC 1 cut(s) 753
BsaJI CCNNGG 7 cut(s) 183, 799, 1105, 1150, 1249, 1347, 1438
BsaWI WCCGGW 2 cut(s) 348, 554
BsaXI ACNNNNNCTCC 4 cut(s) 1004, 1034, 1202, 1232
Bsc4I CCNNNNNNNGG 7 cut(s) 49, 449, 1054, 1143, 1340, 1341, 1556
Bse118I RCCGGY 3 cut(s) 348, 827, 1304
Bse1I ACTGG 7 cut(s) 119, 260, 286, 1140, 1550, 1640, 1684
BseBI CCWGG 5 cut(s) 603, 1382, 1514, 1593, 1658
BseDI CCNNGG 7 cut(s) 183, 799, 1105, 1150, 1249, 1347, 1438
BseGI GGATG 4 cut(s) 290, 439, 1221, 1627
BseLI CCNNNNNNNGG 7 cut(s) 49, 449, 1054, 1143, 1340, 1341, 1556
BseMII CTCAG 2 cut(s) 155, 326
BseNI ACTGG 7 cut(s) 119, 260, 286, 1140, 1550, 1640, 1684
BseRI GAGGAG 3 cut(s) 35, 662, 1009
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 6 cut(s) 572, 872, 902, 957, 1275, 1342
Bsh1236I CGCG 3 cut(s) 483, 865, 1168
BshFI GGCC 8 cut(s) 36, 298, 328, 798, 804, 963, 1104, 1155
BshNI GGYRCC 2 cut(s) 746, 1146
BshTI ACCGGT 1 cut(s) 348
BsiHKAI GWGCWC 2 cut(s) 430, 623
BsiHKCI CYCGRG 1 cut(s) 622
BslFI GGGAC 2 cut(s) 1049, 1357
BslI CCNNNNNNNGG 7 cut(s) 49, 449, 1054, 1143, 1340, 1341, 1556
BsmAI GTCTC 4 cut(s) 447, 479, 1198, 1701
BsmFI GGGAC 2 cut(s) 1049, 1357
BsmI GAATGC 2 cut(s) 520, 893
BsnI GGCC 8 cut(s) 36, 298, 328, 798, 804, 963, 1104, 1155
BsoBI CYCGRG 1 cut(s) 622
Bsp1286I GDGCHC 3 cut(s) 320, 430, 623
Bsp143I GATC 4 cut(s) 607, 1370, 1519, 1708
BspACI CCGC 6 cut(s) 690, 915, 1023, 1176, 1283, 1286
BspANI GGCC 8 cut(s) 36, 298, 328, 798, 804, 963, 1104, 1155
BspCNI CTCAG 2 cut(s) 154, 325
BspFNI CGCG 3 cut(s) 483, 865, 1168
BspLI GGNNCC 4 cut(s) 748, 799, 1148, 1345
BspMAI CTGCAG 1 cut(s) 1293
BspPI GGATC 3 cut(s) 1378, 1514, 1716
BspT107I GGYRCC 2 cut(s) 746, 1146
BsrBI CCGCTC 1 cut(s) 692
BsrFI RCCGGY 3 cut(s) 348, 827, 1304
BsrI ACTGG 7 cut(s) 119, 260, 286, 1140, 1550, 1640, 1684
BssAI RCCGGY 3 cut(s) 348, 827, 1304
BssECI CCNNGG 7 cut(s) 183, 799, 1105, 1150, 1249, 1347, 1438
BssMI GATC 4 cut(s) 607, 1370, 1519, 1708
BssNI GRCGYC 1 cut(s) 753
BssT1I CCWWGG 3 cut(s) 183, 1150, 1347
Bst2UI CCWGG 5 cut(s) 603, 1382, 1514, 1593, 1658
Bst6I CTCTTC 2 cut(s) 119, 1094
BstACI GRCGYC 1 cut(s) 753
BstAPI GCANNNNNTGC 3 cut(s) 866, 887, 951
BstC8I GCNNGC 5 cut(s) 390, 767, 867, 1166, 1180
BstDEI CTNAG 4 cut(s) 141, 312, 407, 972
BstDSI CCRYGG 1 cut(s) 1438
BstENI CCTNNNNNAGG 2 cut(s) 447, 1141
BstF5I GGATG 4 cut(s) 290, 439, 1221, 1627
BstFNI CGCG 3 cut(s) 483, 865, 1168
BstHHI GCGC 5 cut(s) 483, 865, 881, 1170, 1546
BstKTI GATC 4 cut(s) 610, 1373, 1522, 1711
BstMAI GTCTC 4 cut(s) 447, 479, 1198, 1701
BstMBI GATC 4 cut(s) 607, 1370, 1519, 1708
BstMWI GCNNNNNNNGC 8 cut(s) 866, 887, 951, 960, 982, 1044, 1161, 1314
BstNI CCWGG 5 cut(s) 603, 1382, 1514, 1593, 1658
BstSFI CTRYAG 2 cut(s) 760, 1289
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 3 cut(s) 483, 865, 1168
BstV1I GCAGC 6 cut(s) 572, 872, 902, 957, 1275, 1342
BstX2I RGATCY 1 cut(s) 1708
BstXI CCANNNNNNTGG 1 cut(s) 1599
BstYI RGATCY 1 cut(s) 1708
BsuI GTATCC 3 cut(s) 471, 1346, 1436
BsuRI GGCC 8 cut(s) 36, 298, 328, 798, 804, 963, 1104, 1155
BtgI CCRYGG 1 cut(s) 1438
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 4 cut(s) 290, 439, 1221, 1627
BtsIMutI CAGTG 7 cut(s) 126, 253, 320, 377, 414, 642, 1557
Cac8I GCNNGC 5 cut(s) 390, 767, 867, 1166, 1180
CaiI CAGNNNCTG 1 cut(s) 951
CfoI GCGC 5 cut(s) 483, 865, 881, 1170, 1546
Cfr10I RCCGGY 3 cut(s) 348, 827, 1304
Cfr13I GGNCC 7 cut(s) 176, 296, 327, 797, 962, 1154, 1344
CseI GACGC 1 cut(s) 761
CsiI ACCWGGT 2 cut(s) 601, 1512
Csp6I GTAC 3 cut(s) 8, 375, 850
CspAI ACCGGT 1 cut(s) 348
CviAII CATG 7 cut(s) 95, 260, 790, 856, 942, 982, 1183
CviQI GTAC 3 cut(s) 8, 375, 850
DdeI CTNAG 4 cut(s) 141, 312, 407, 972
DpnI GATC 4 cut(s) 609, 1372, 1521, 1710
DpnII GATC 4 cut(s) 607, 1370, 1519, 1708
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 2 cut(s) 119, 1094
EarI CTCTTC 2 cut(s) 119, 1094
EciI GGCGGA 1 cut(s) 1012
Eco130I CCWWGG 3 cut(s) 183, 1150, 1347
Eco147I AGGCCT 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 176, 1344
Eco88I CYCGRG 1 cut(s) 622
EcoNI CCTNNNNNAGG 2 cut(s) 447, 1141
EcoO109I RGGNCCY 2 cut(s) 797, 1154
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 5 cut(s) 601, 1380, 1512, 1591, 1656
EcoT14I CCWWGG 3 cut(s) 183, 1150, 1347
EcoT22I ATGCAT 1 cut(s) 1611
ErhI CCWWGG 3 cut(s) 183, 1150, 1347
FaeI CATG 7 cut(s) 98, 263, 793, 859, 945, 985, 1186
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 2 cut(s) 1049, 1357
FatI CATG 7 cut(s) 94, 259, 789, 855, 941, 981, 1182
FauI CCCGC 1 cut(s) 1290
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 8 cut(s) 561, 690, 861, 891, 946, 1286, 1289, 1331
FokI GGATG 4 cut(s) 297, 426, 1208, 1634
Fsp4HI GCNGC 8 cut(s) 561, 690, 861, 891, 946, 1286, 1289, 1331
FspBI CTAG 4 cut(s) 209, 794, 1050, 1401
GlaI GCGC 5 cut(s) 482, 864, 880, 1169, 1545
GluI GCNGC 8 cut(s) 561, 690, 861, 891, 946, 1286, 1289, 1331
GsuI CTGGAG 2 cut(s) 1123, 1667
HaeIII GGCC 8 cut(s) 36, 298, 328, 798, 804, 963, 1104, 1155
HgaI GACGC 1 cut(s) 761
HhaI GCGC 5 cut(s) 483, 865, 881, 1170, 1546
Hin1I GRCGYC 1 cut(s) 753
Hin1II CATG 7 cut(s) 98, 263, 793, 859, 945, 985, 1186
Hin6I GCGC 5 cut(s) 481, 863, 879, 1168, 1544
HinP1I GCGC 5 cut(s) 481, 863, 879, 1168, 1544
HincII GTYRAC 3 cut(s) 193, 529, 599
HindII GTYRAC 3 cut(s) 193, 529, 599
HindIII AAGCTT 1 cut(s) 1230
HinfI GANTC 8 cut(s) 455, 653, 678, 1110, 1377, 1429, 1671, 1694
HpaI GTTAAC 1 cut(s) 193
Hpy166II GTNNAC 7 cut(s) 160, 193, 354, 377, 529, 599, 1627
Hpy188I TCNGA 7 cut(s) 144, 577, 677, 1043, 1109, 1267, 1574
Hpy188III TCNNGA 5 cut(s) 223, 368, 923, 1374, 1675
Hpy8I GTNNAC 7 cut(s) 160, 193, 354, 377, 529, 599, 1627
Hpy99I CGWCG 6 cut(s) 530, 533, 722, 755, 818, 1082
HpyAV CCTTC 6 cut(s) 365, 781, 852, 1036, 1235, 1460
HpyCH4IV ACGT 5 cut(s) 243, 531, 816, 1311, 1455
HpyF10VI GCNNNNNNNGC 8 cut(s) 866, 887, 951, 960, 982, 1044, 1161, 1314
HpyF3I CTNAG 4 cut(s) 141, 312, 407, 972
HpySE526I ACGT 5 cut(s) 243, 531, 816, 1311, 1455
Hsp92I GRCGYC 1 cut(s) 753
Hsp92II CATG 7 cut(s) 98, 263, 793, 859, 945, 985, 1186
HspAI GCGC 5 cut(s) 481, 863, 879, 1168, 1544
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 607, 1370, 1519, 1708
LmnI GCTCC 6 cut(s) 23, 425, 557, 568, 943, 1686
Lsp1109I GCAGC 6 cut(s) 572, 872, 902, 957, 1275, 1342
LweI GCATC 2 cut(s) 159, 568
MabI ACCWGGT 2 cut(s) 601, 1512
MaeI CTAG 4 cut(s) 209, 794, 1050, 1401
MaeII ACGT 5 cut(s) 243, 531, 816, 1311, 1455
MaeIII GTNAC 7 cut(s) 168, 220, 244, 307, 1258, 1408, 1613
MalI GATC 4 cut(s) 609, 1372, 1521, 1710
MbiI CCGCTC 1 cut(s) 692
MboI GATC 4 cut(s) 607, 1370, 1519, 1708
MboII GAAGA 6 cut(s) 136, 488, 703, 1081, 1084, 1703
MflI RGATCY 1 cut(s) 1708
MhlI GDGCHC 3 cut(s) 320, 430, 623
MluCI AATT 6 cut(s) 98, 264, 302, 1129, 1477, 1505
MlyI GAGTC 7 cut(s) 449, 647, 687, 1104, 1386, 1680, 1703
MmeI TCCRAC 1 cut(s) 1686
Mph1103I ATGCAT 1 cut(s) 1611
MroXI GAANNNNTTC 1 cut(s) 1088
MseI TTAA 3 cut(s) 192, 696, 821
MslI CAYNNNNRTG 6 cut(s) 93, 155, 258, 382, 788, 1620
MspA1I CMGCKG 1 cut(s) 1288
Mva1269I GAATGC 2 cut(s) 520, 893
MvaI CCWGG 5 cut(s) 603, 1382, 1514, 1593, 1658
MvnI CGCG 3 cut(s) 483, 865, 1168
MwoI GCNNNNNNNGC 8 cut(s) 866, 887, 951, 960, 982, 1044, 1161, 1314
NciI CCSGG 6 cut(s) 174, 330, 801, 1251, 1274, 1342
NdeII GATC 4 cut(s) 607, 1370, 1519, 1708
NlaIII CATG 7 cut(s) 98, 263, 793, 859, 945, 985, 1186
NlaIV GGNNCC 4 cut(s) 748, 799, 1148, 1345
NmuCI GTSAC 5 cut(s) 220, 244, 1258, 1408, 1613
NsiI ATGCAT 1 cut(s) 1611
OliI CACNNNNGTG 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 622
PceI AGGCCT 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 1452
PctI GAATGC 2 cut(s) 520, 893
PdmI GAANNNNTTC 1 cut(s) 1088
PfeI GAWTC 1 cut(s) 1429
PflMI CCANNNNNTGG 1 cut(s) 1556
PfoI TCCNGGA 1 cut(s) 1340
PinAI ACCGGT 1 cut(s) 348
PkrI GCNGC 8 cut(s) 562, 691, 862, 892, 947, 1287, 1290, 1332
PleI GAGTC 7 cut(s) 449, 647, 686, 1104, 1385, 1679, 1702
PpsI GAGTC 7 cut(s) 449, 647, 686, 1104, 1385, 1679, 1702
Psp6I CCWGG 5 cut(s) 601, 1380, 1512, 1591, 1656
PspGI CCWGG 5 cut(s) 601, 1380, 1512, 1591, 1656
PspN4I GGNNCC 4 cut(s) 748, 799, 1148, 1345
PspPI GGNCC 7 cut(s) 176, 296, 327, 797, 962, 1154, 1344
PspXI VCTCGAGB 1 cut(s) 622
PstI CTGCAG 1 cut(s) 1293
PstNI CAGNNNCTG 1 cut(s) 951
PsuI RGATCY 1 cut(s) 1708
RsaI GTAC 3 cut(s) 9, 376, 851
RsaNI GTAC 3 cut(s) 8, 375, 850
RseI CAYNNNNRTG 6 cut(s) 93, 155, 258, 382, 788, 1620
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 3 cut(s) 192, 696, 821
SatI GCNGC 8 cut(s) 561, 690, 861, 891, 946, 1286, 1289, 1331
Sau3AI GATC 4 cut(s) 607, 1370, 1519, 1708
Sau96I GGNCC 7 cut(s) 176, 296, 327, 797, 962, 1154, 1344
ScaI AGTACT 1 cut(s) 9
SchI GAGTC 7 cut(s) 449, 647, 687, 1104, 1386, 1680, 1703
SduI GDGCHC 3 cut(s) 320, 430, 623
SexAI ACCWGGT 2 cut(s) 601, 1512
SfaNI GCATC 2 cut(s) 159, 568
SfcI CTRYAG 2 cut(s) 760, 1289
Sfr274I CTCGAG 1 cut(s) 622
SgrAI CRCCGGYG 1 cut(s) 827
SgrDI CGTCGACG 1 cut(s) 527
SinI GGWCC 2 cut(s) 176, 1344
SlaI CTCGAG 1 cut(s) 622
SmiMI CAYNNNNRTG 6 cut(s) 93, 155, 258, 382, 788, 1620
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
SpeI ACTAGT 1 cut(s) 1400
Sse9I AATT 6 cut(s) 98, 264, 302, 1129, 1477, 1505
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 6 cut(s) 690, 915, 1023, 1176, 1283, 1286
SspMI CTAG 4 cut(s) 209, 794, 1050, 1401
StuI AGGCCT 1 cut(s) 36
StyI CCWWGG 3 cut(s) 183, 1150, 1347
TaiI ACGT 5 cut(s) 246, 534, 819, 1314, 1458
TaqI TCGA 9 cut(s) 59, 235, 528, 623, 897, 924, 1059, 1077, 1692
TasI AATT 6 cut(s) 98, 264, 302, 1129, 1477, 1505
TatI WGTACW 1 cut(s) 7
TauI GCSGC 2 cut(s) 692, 1288
TfiI GAWTC 1 cut(s) 1429
Tru1I TTAA 3 cut(s) 192, 696, 821
Tru9I TTAA 3 cut(s) 192, 696, 821
TscAI CASTG 7 cut(s) 126, 260, 320, 384, 421, 642, 1557
TseFI GTSAC 5 cut(s) 220, 244, 1258, 1408, 1613
TseI GCWGC 6 cut(s) 560, 860, 890, 945, 1288, 1330
Tsp45I GTSAC 5 cut(s) 220, 244, 1258, 1408, 1613
TspDTI ATGAA 5 cut(s) 45, 111, 428, 1199, 1421
TspGWI ACGGA 5 cut(s) 177, 1383, 1455, 1683, 1707
TspRI CASTG 7 cut(s) 126, 260, 320, 384, 421, 642, 1557
Van91I CCANNNNNTGG 1 cut(s) 1556
VpaK11BI GGWCC 2 cut(s) 176, 1344
XagI CCTNNNNNAGG 2 cut(s) 447, 1141
XapI RAATTY 5 cut(s) 98, 264, 302, 1129, 1505
XcmI CCANNNNNNNNNTGG 2 cut(s) 278, 1557
XhoI CTCGAG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 1088
XspI CTAG 4 cut(s) 209, 794, 1050, 1401
ZrmI AGTACT 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.