ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 38 - 497 | 3.2e-93 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 932 |
| AarI | CACCTGC | 1 cut(s) | 1150 |
| Acc36I | ACCTGC | 2 cut(s) | 258, 1150 |
| AccB1I | GGYRCC | 1 cut(s) | 1409 |
| AccBSI | CCGCTC | 1 cut(s) | 632 |
| AccII | CGCG | 2 cut(s) | 1162, 1164 |
| AciI | CCGC | 7 cut(s) | 275, 435, 513, 602, 632, 1160, 1302 |
| AclWI | GGATC | 4 cut(s) | 676, 887, 1244, 1257 |
| AcoI | YGGCCR | 1 cut(s) | 972 |
| AcsI | RAATTY | 1 cut(s) | 460 |
| AcuI | CTGAAG | 2 cut(s) | 695, 1341 |
| AcvI | CACGTG | 1 cut(s) | 1201 |
| AcyI | GRCGYC | 1 cut(s) | 1410 |
| AfaI | GTAC | 5 cut(s) | 80, 108, 383, 523, 1318 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 140, 981 |
| AgsI | TTSAA | 9 cut(s) | 281, 506, 565, 580, 696, 725, 740, 794, 1421 |
| AhlI | ACTAGT | 2 cut(s) | 524, 1310 |
| AjiI | CACGTC | 1 cut(s) | 220 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 109, 141, 1035, 1067 |
| AleI | CACNNNNGTG | 1 cut(s) | 974 |
| AluBI | AGCT | 9 cut(s) | 30, 427, 571, 651, 673, 1046, 1361, 1373, 1496 |
| AluI | AGCT | 9 cut(s) | 30, 427, 571, 651, 673, 1046, 1361, 1373, 1496 |
| Alw21I | GWGCWC | 3 cut(s) | 429, 813, 1375 |
| Alw26I | GTCTC | 3 cut(s) | 61, 547, 1348 |
| AlwI | GGATC | 4 cut(s) | 676, 887, 1244, 1257 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 896 |
| AoxI | GGCC | 1 cut(s) | 972 |
| ApeKI | GCWGC | 1 cut(s) | 648 |
| ApoI | RAATTY | 1 cut(s) | 460 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 4 cut(s) | 399, 1147, 1164, 1412 |
| AspS9I | GGNCC | 1 cut(s) | 781 |
| AsuC2I | CCSGG | 1 cut(s) | 716 |
| AsuHPI | GGTGA | 4 cut(s) | 173, 258, 398, 439 |
| AvaII | GGWCC | 1 cut(s) | 781 |
| BamHI | GGATCC | 1 cut(s) | 1249 |
| BanI | GGYRCC | 1 cut(s) | 1409 |
| BanII | GRGCYC | 4 cut(s) | 379, 429, 1375, 1503 |
| BauI | CACGAG | 2 cut(s) | 254, 1206 |
| BbrPI | CACGTG | 1 cut(s) | 1201 |
| BbsI | GAAGAC | 1 cut(s) | 513 |
| Bbv12I | GWGCWC | 3 cut(s) | 429, 813, 1375 |
| BbvI | GCAGC | 1 cut(s) | 660 |
| BccI | CCATC | 8 cut(s) | 620, 754, 772, 824, 1014, 1387, 1439, 1544 |
| BceAI | ACGGC | 2 cut(s) | 959, 987 |
| BcnI | CCSGG | 1 cut(s) | 716 |
| BcoDI | GTCTC | 3 cut(s) | 61, 547, 1348 |
| BcuI | ACTAGT | 2 cut(s) | 524, 1310 |
| BfaI | CTAG | 5 cut(s) | 525, 1029, 1094, 1311, 1475 |
| BfmI | CTRYAG | 1 cut(s) | 1103 |
| BfoI | RGCGCY | 1 cut(s) | 1413 |
| BfuAI | ACCTGC | 2 cut(s) | 258, 1150 |
| BglII | AGATCT | 1 cut(s) | 1081 |
| BisI | GCNGC | 3 cut(s) | 649, 1160, 1303 |
| BlpI | GCTNAGC | 1 cut(s) | 1497 |
| BlsI | GCNGC | 3 cut(s) | 650, 1161, 1304 |
| BmcAI | AGTACT | 3 cut(s) | 80, 108, 523 |
| Bme1390I | CCNGG | 1 cut(s) | 716 |
| Bme18I | GGWCC | 1 cut(s) | 781 |
| BmgBI | CACGTC | 1 cut(s) | 220 |
| BmgT120I | GGNCC | 1 cut(s) | 781 |
| BmiI | GGNNCC | 5 cut(s) | 174, 248, 378, 1251, 1411 |
| BmrFI | CCNGG | 1 cut(s) | 716 |
| BmrI | ACTGGG | 3 cut(s) | 94, 1415, 1441 |
| BmsI | GCATC | 1 cut(s) | 974 |
| BmuI | ACTGGG | 3 cut(s) | 94, 1415, 1441 |
| BpiI | GAAGAC | 1 cut(s) | 513 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 416, 448, 1362, 1394 |
| BpmI | CTGGAG | 1 cut(s) | 1389 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1497 |
| BpuEI | CTTGAG | 1 cut(s) | 476 |
| BpuMI | CCSGG | 1 cut(s) | 716 |
| Bsa29I | ATCGAT | 2 cut(s) | 864, 1291 |
| BsaAI | YACGTR | 2 cut(s) | 947, 1201 |
| BsaHI | GRCGYC | 1 cut(s) | 1410 |
| BsaI | GGTCTC | 1 cut(s) | 547 |
| BsaJI | CCNNGG | 6 cut(s) | 557, 685, 969, 975, 1119, 1485 |
| BsaWI | WCCGGW | 2 cut(s) | 183, 813 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 140, 981 |
| Bse118I | RCCGGY | 1 cut(s) | 335 |
| Bse1I | ACTGG | 4 cut(s) | 89, 398, 1410, 1436 |
| BseCI | ATCGAT | 2 cut(s) | 864, 1291 |
| BseDI | CCNNGG | 6 cut(s) | 557, 685, 969, 975, 1119, 1485 |
| BseGI | GGATG | 3 cut(s) | 762, 965, 1006 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 140, 981 |
| BseMII | CTCAG | 4 cut(s) | 172, 563, 888, 1488 |
| BseNI | ACTGG | 4 cut(s) | 89, 398, 1410, 1436 |
| BseRI | GAGGAG | 2 cut(s) | 650, 1365 |
| BseX3I | CGGCCG | 1 cut(s) | 972 |
| BseXI | GCAGC | 1 cut(s) | 660 |
| BseYI | CCCAGC | 1 cut(s) | 950 |
| Bsh1236I | CGCG | 2 cut(s) | 1162, 1164 |
| Bsh1285I | CGRYCG | 1 cut(s) | 975 |
| BshFI | GGCC | 1 cut(s) | 974 |
| BshNI | GGYRCC | 1 cut(s) | 1409 |
| BshVI | ATCGAT | 2 cut(s) | 864, 1291 |
| BsiEI | CGRYCG | 1 cut(s) | 975 |
| BsiHKAI | GWGCWC | 3 cut(s) | 429, 813, 1375 |
| BsiSI | CCGG | 4 cut(s) | 184, 336, 716, 814 |
| BsiWI | CGTACG | 1 cut(s) | 381 |
| BslFI | GGGAC | 1 cut(s) | 967 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 140, 981 |
| BsmAI | GTCTC | 3 cut(s) | 61, 547, 1348 |
| BsmBI | CGTCTC | 2 cut(s) | 61, 1348 |
| BsmFI | GGGAC | 1 cut(s) | 967 |
| BsmI | GAATGC | 3 cut(s) | 290, 1184, 1239 |
| BsnI | GGCC | 1 cut(s) | 974 |
| Bso31I | GGTCTC | 1 cut(s) | 547 |
| Bsp1286I | GDGCHC | 5 cut(s) | 379, 429, 813, 1375, 1503 |
| Bsp143I | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1497 |
| Bsp19I | CCATGG | 2 cut(s) | 685, 1485 |
| BspACI | CCGC | 7 cut(s) | 275, 435, 513, 602, 632, 1160, 1302 |
| BspANI | GGCC | 1 cut(s) | 974 |
| BspCNI | CTCAG | 4 cut(s) | 171, 564, 889, 1489 |
| BspDI | ATCGAT | 2 cut(s) | 864, 1291 |
| BspFNI | CGCG | 2 cut(s) | 1162, 1164 |
| BspHI | TCATGA | 3 cut(s) | 24, 456, 585 |
| BspLI | GGNNCC | 5 cut(s) | 174, 248, 378, 1251, 1411 |
| BspMI | ACCTGC | 2 cut(s) | 258, 1150 |
| BspPI | GGATC | 4 cut(s) | 676, 887, 1244, 1257 |
| BspQI | GCTCTTC | 1 cut(s) | 434 |
| BspT107I | GGYRCC | 1 cut(s) | 1409 |
| BspTNI | GGTCTC | 1 cut(s) | 547 |
| BsrBI | CCGCTC | 1 cut(s) | 632 |
| BsrFI | RCCGGY | 1 cut(s) | 335 |
| BsrI | ACTGG | 4 cut(s) | 89, 398, 1410, 1436 |
| BssAI | RCCGGY | 1 cut(s) | 335 |
| BssECI | CCNNGG | 6 cut(s) | 557, 685, 969, 975, 1119, 1485 |
| BssMI | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| BssNI | GRCGYC | 1 cut(s) | 1410 |
| BssSI | CACGAG | 2 cut(s) | 254, 1206 |
| BssT1I | CCWWGG | 2 cut(s) | 685, 1485 |
| Bst2BI | CACGAG | 2 cut(s) | 254, 1206 |
| Bst4CI | ACNGT | 5 cut(s) | 320, 386, 501, 1218, 1260 |
| Bst6I | CTCTTC | 4 cut(s) | 268, 434, 602, 746 |
| BstACI | GRCGYC | 1 cut(s) | 1410 |
| BstBAI | YACGTR | 2 cut(s) | 947, 1201 |
| BstC8I | GCNNGC | 2 cut(s) | 337, 646 |
| BstDEI | CTNAG | 7 cut(s) | 158, 204, 421, 572, 897, 1069, 1497 |
| BstDSI | CCRYGG | 4 cut(s) | 685, 969, 975, 1485 |
| BstF5I | GGATG | 3 cut(s) | 762, 965, 1006 |
| BstFNI | CGCG | 2 cut(s) | 1162, 1164 |
| BstH2I | RGCGCY | 1 cut(s) | 1413 |
| BstHHI | GCGC | 4 cut(s) | 399, 1147, 1164, 1412 |
| BstKTI | GATC | 7 cut(s) | 261, 684, 864, 895, 1084, 1188, 1252 |
| BstMAI | GTCTC | 3 cut(s) | 61, 547, 1348 |
| BstMBI | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| BstMCI | CGRYCG | 1 cut(s) | 975 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 880, 971, 1524 |
| BstSCI | CCNGG | 1 cut(s) | 714 |
| BstSFI | CTRYAG | 1 cut(s) | 1103 |
| BstUI | CGCG | 2 cut(s) | 1162, 1164 |
| BstV1I | GCAGC | 1 cut(s) | 660 |
| BstV2I | GAAGAC | 1 cut(s) | 513 |
| BstX2I | RGATCY | 3 cut(s) | 892, 1081, 1249 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 976 |
| BstYI | RGATCY | 3 cut(s) | 892, 1081, 1249 |
| BstZI | CGGCCG | 1 cut(s) | 972 |
| Bsu15I | ATCGAT | 2 cut(s) | 864, 1291 |
| BsuRI | GGCC | 1 cut(s) | 974 |
| BsuTUI | ATCGAT | 2 cut(s) | 864, 1291 |
| BtgI | CCRYGG | 4 cut(s) | 685, 969, 975, 1485 |
| BtrI | CACGTC | 1 cut(s) | 220 |
| BtsCI | GGATG | 3 cut(s) | 762, 965, 1006 |
| BveI | ACCTGC | 2 cut(s) | 258, 1150 |
| Cac8I | GCNNGC | 2 cut(s) | 337, 646 |
| CaiI | CAGNNNCTG | 1 cut(s) | 896 |
| CciI | TCATGA | 3 cut(s) | 24, 456, 585 |
| CfoI | GCGC | 4 cut(s) | 399, 1147, 1164, 1412 |
| Cfr10I | RCCGGY | 1 cut(s) | 335 |
| Cfr13I | GGNCC | 1 cut(s) | 781 |
| ClaI | ATCGAT | 2 cut(s) | 864, 1291 |
| Csp6I | GTAC | 5 cut(s) | 79, 107, 382, 522, 1317 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1294, 1329 |
| CviAII | CATG | 8 cut(s) | 25, 451, 457, 586, 686, 919, 1462, 1486 |
| CviQI | GTAC | 5 cut(s) | 79, 107, 382, 522, 1317 |
| DdeI | CTNAG | 7 cut(s) | 158, 204, 421, 572, 897, 1069, 1497 |
| DinI | GGCGCC | 1 cut(s) | 1411 |
| DpnI | GATC | 7 cut(s) | 260, 683, 863, 894, 1083, 1187, 1251 |
| DpnII | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| EaeI | YGGCCR | 1 cut(s) | 972 |
| EagI | CGGCCG | 1 cut(s) | 972 |
| Eam1104I | CTCTTC | 4 cut(s) | 268, 434, 602, 746 |
| EarI | CTCTTC | 4 cut(s) | 268, 434, 602, 746 |
| Ecl136II | GAGCTC | 2 cut(s) | 427, 1373 |
| EclXI | CGGCCG | 1 cut(s) | 972 |
| Eco130I | CCWWGG | 2 cut(s) | 685, 1485 |
| Eco24I | GRGCYC | 4 cut(s) | 379, 429, 1375, 1503 |
| Eco31I | GGTCTC | 1 cut(s) | 547 |
| Eco47I | GGWCC | 1 cut(s) | 781 |
| Eco52I | CGGCCG | 1 cut(s) | 972 |
| Eco53kI | GAGCTC | 2 cut(s) | 427, 1373 |
| Eco57I | CTGAAG | 2 cut(s) | 695, 1341 |
| Eco72I | CACGTG | 1 cut(s) | 1201 |
| EcoICRI | GAGCTC | 2 cut(s) | 427, 1373 |
| EcoT14I | CCWWGG | 2 cut(s) | 685, 1485 |
| EcoT38I | GRGCYC | 4 cut(s) | 379, 429, 1375, 1503 |
| EgeI | GGCGCC | 1 cut(s) | 1411 |
| EheI | GGCGCC | 1 cut(s) | 1411 |
| ErhI | CCWWGG | 2 cut(s) | 685, 1485 |
| Esp3I | CGTCTC | 2 cut(s) | 61, 1348 |
| FaeI | CATG | 8 cut(s) | 28, 454, 460, 589, 689, 922, 1465, 1489 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 109, 141 |
| FaqI | GGGAC | 1 cut(s) | 967 |
| FatI | CATG | 8 cut(s) | 24, 450, 456, 585, 685, 918, 1461, 1485 |
| FauI | CCCGC | 1 cut(s) | 595 |
| Fnu4HI | GCNGC | 3 cut(s) | 649, 1160, 1303 |
| FokI | GGATG | 3 cut(s) | 769, 952, 993 |
| FriOI | GRGCYC | 4 cut(s) | 379, 429, 1375, 1503 |
| Fsp4HI | GCNGC | 3 cut(s) | 649, 1160, 1303 |
| FspBI | CTAG | 5 cut(s) | 525, 1029, 1094, 1311, 1475 |
| GlaI | GCGC | 4 cut(s) | 398, 1146, 1163, 1411 |
| GluI | GCNGC | 3 cut(s) | 649, 1160, 1303 |
| GsaI | CCCAGC | 1 cut(s) | 954 |
| GsuI | CTGGAG | 1 cut(s) | 1389 |
| HaeII | RGCGCY | 1 cut(s) | 1413 |
| HaeIII | GGCC | 1 cut(s) | 974 |
| HapII | CCGG | 4 cut(s) | 184, 336, 716, 814 |
| HhaI | GCGC | 4 cut(s) | 399, 1147, 1164, 1412 |
| Hin1I | GRCGYC | 1 cut(s) | 1410 |
| Hin1II | CATG | 8 cut(s) | 28, 454, 460, 589, 689, 922, 1465, 1489 |
| Hin6I | GCGC | 4 cut(s) | 397, 1145, 1162, 1410 |
| HinP1I | GCGC | 4 cut(s) | 397, 1145, 1162, 1410 |
| HinfI | GANTC | 6 cut(s) | 834, 959, 1166, 1267, 1336, 1417 |
| HpaII | CCGG | 4 cut(s) | 184, 336, 716, 814 |
| HphI | GGTGA | 4 cut(s) | 173, 258, 398, 439 |
| Hpy166II | GTNNAC | 1 cut(s) | 323 |
| Hpy188I | TCNGA | 6 cut(s) | 161, 233, 246, 468, 1174, 1382 |
| Hpy188III | TCNNGA | 8 cut(s) | 25, 256, 457, 586, 896, 1010, 1253, 1368 |
| Hpy8I | GTNNAC | 1 cut(s) | 323 |
| Hpy99I | CGWCG | 2 cut(s) | 411, 809 |
| HpyAV | CCTTC | 7 cut(s) | 135, 279, 463, 670, 1316, 1463, 1513 |
| HpyCH4III | ACNGT | 5 cut(s) | 320, 386, 501, 1218, 1260 |
| HpyCH4IV | ACGT | 5 cut(s) | 219, 325, 582, 946, 1200 |
| HpyCH4V | TGCA | 6 cut(s) | 314, 840, 883, 965, 1182, 1518 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 880, 971, 1524 |
| HpyF3I | CTNAG | 7 cut(s) | 158, 204, 421, 572, 897, 1069, 1497 |
| HpySE526I | ACGT | 5 cut(s) | 219, 325, 582, 946, 1200 |
| Hsp92I | GRCGYC | 1 cut(s) | 1410 |
| Hsp92II | CATG | 8 cut(s) | 28, 454, 460, 589, 689, 922, 1465, 1489 |
| HspAI | GCGC | 4 cut(s) | 397, 1145, 1162, 1410 |
| KasI | GGCGCC | 1 cut(s) | 1409 |
| KroI | GCCGGC | 1 cut(s) | 335 |
| KroNI | GCCGGC | 1 cut(s) | 337 |
| Kzo9I | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| LguI | GCTCTTC | 1 cut(s) | 434 |
| LmnI | GCTCC | 6 cut(s) | 382, 629, 670, 1236, 1370, 1378 |
| Lsp1109I | GCAGC | 1 cut(s) | 660 |
| LweI | GCATC | 1 cut(s) | 974 |
| MaeI | CTAG | 5 cut(s) | 525, 1029, 1094, 1311, 1475 |
| MaeII | ACGT | 5 cut(s) | 219, 325, 582, 946, 1200 |
| MaeIII | GTNAC | 3 cut(s) | 92, 215, 990 |
| MalI | GATC | 7 cut(s) | 260, 683, 863, 894, 1083, 1187, 1251 |
| MbiI | CCGCTC | 1 cut(s) | 632 |
| MboI | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| MflI | RGATCY | 3 cut(s) | 892, 1081, 1249 |
| MhlI | GDGCHC | 5 cut(s) | 379, 429, 813, 1375, 1503 |
| MluCI | AATT | 6 cut(s) | 135, 460, 532, 764, 939, 1455 |
| Mly113I | GGCGCC | 1 cut(s) | 1410 |
| MlyI | GAGTC | 2 cut(s) | 843, 1175 |
| MmeI | TCCRAC | 2 cut(s) | 1033, 1295 |
| MroNI | GCCGGC | 1 cut(s) | 335 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MslI | CAYNNNNRTG | 3 cut(s) | 455, 974, 1011 |
| MspI | CCGG | 4 cut(s) | 184, 336, 716, 814 |
| MspR9I | CCNGG | 1 cut(s) | 716 |
| Mva1269I | GAATGC | 3 cut(s) | 290, 1184, 1239 |
| MvnI | CGCG | 2 cut(s) | 1162, 1164 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 880, 971, 1524 |
| NaeI | GCCGGC | 1 cut(s) | 337 |
| NarI | GGCGCC | 1 cut(s) | 1410 |
| NciI | CCSGG | 1 cut(s) | 716 |
| NcoI | CCATGG | 2 cut(s) | 685, 1485 |
| NdeII | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| NgoMIV | GCCGGC | 1 cut(s) | 335 |
| NlaIII | CATG | 8 cut(s) | 28, 454, 460, 589, 689, 922, 1465, 1489 |
| NlaIV | GGNNCC | 5 cut(s) | 174, 248, 378, 1251, 1411 |
| NmuCI | GTSAC | 2 cut(s) | 215, 990 |
| OliI | CACNNNNGTG | 1 cut(s) | 974 |
| PagI | TCATGA | 3 cut(s) | 24, 456, 585 |
| PaqCI | CACCTGC | 1 cut(s) | 1150 |
| PciSI | GCTCTTC | 1 cut(s) | 434 |
| PctI | GAATGC | 3 cut(s) | 290, 1184, 1239 |
| PdiI | GCCGGC | 1 cut(s) | 337 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 4 cut(s) | 959, 1267, 1336, 1417 |
| Pfl23II | CGTACG | 1 cut(s) | 381 |
| PkrI | GCNGC | 3 cut(s) | 650, 1161, 1304 |
| PleI | GAGTC | 2 cut(s) | 842, 1174 |
| PluTI | GGCGCC | 1 cut(s) | 1413 |
| PmaCI | CACGTG | 1 cut(s) | 1201 |
| PmlI | CACGTG | 1 cut(s) | 1201 |
| PpsI | GAGTC | 2 cut(s) | 842, 1174 |
| Ppu21I | YACGTR | 2 cut(s) | 947, 1201 |
| PsiI | TTATAA | 1 cut(s) | 932 |
| Psp124BI | GAGCTC | 2 cut(s) | 429, 1375 |
| PspCI | CACGTG | 1 cut(s) | 1201 |
| PspFI | CCCAGC | 1 cut(s) | 950 |
| PspLI | CGTACG | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 5 cut(s) | 174, 248, 378, 1251, 1411 |
| PspPI | GGNCC | 1 cut(s) | 781 |
| PstNI | CAGNNNCTG | 1 cut(s) | 896 |
| PsuI | RGATCY | 3 cut(s) | 892, 1081, 1249 |
| RsaI | GTAC | 5 cut(s) | 80, 108, 383, 523, 1318 |
| RsaNI | GTAC | 5 cut(s) | 79, 107, 382, 522, 1317 |
| RseI | CAYNNNNRTG | 3 cut(s) | 455, 974, 1011 |
| SacI | GAGCTC | 2 cut(s) | 429, 1375 |
| SapI | GCTCTTC | 1 cut(s) | 434 |
| SatI | GCNGC | 3 cut(s) | 649, 1160, 1303 |
| Sau3AI | GATC | 7 cut(s) | 258, 681, 861, 892, 1081, 1185, 1249 |
| Sau96I | GGNCC | 1 cut(s) | 781 |
| ScaI | AGTACT | 3 cut(s) | 80, 108, 523 |
| SchI | GAGTC | 2 cut(s) | 843, 1175 |
| ScrFI | CCNGG | 1 cut(s) | 716 |
| SduI | GDGCHC | 5 cut(s) | 379, 429, 813, 1375, 1503 |
| SfaNI | GCATC | 1 cut(s) | 974 |
| SfcI | CTRYAG | 1 cut(s) | 1103 |
| SfoI | GGCGCC | 1 cut(s) | 1411 |
| SinI | GGWCC | 1 cut(s) | 781 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 455, 974, 1011 |
| SmlI | CTYRAG | 1 cut(s) | 491 |
| SmoI | CTYRAG | 1 cut(s) | 491 |
| SpeI | ACTAGT | 2 cut(s) | 524, 1310 |
| Sse9I | AATT | 6 cut(s) | 135, 460, 532, 764, 939, 1455 |
| SsiI | CCGC | 7 cut(s) | 275, 435, 513, 602, 632, 1160, 1302 |
| SspDI | GGCGCC | 1 cut(s) | 1409 |
| SspI | AATATT | 1 cut(s) | 11 |
| SspMI | CTAG | 5 cut(s) | 525, 1029, 1094, 1311, 1475 |
| SstI | GAGCTC | 2 cut(s) | 429, 1375 |
| StyD4I | CCNGG | 1 cut(s) | 714 |
| StyI | CCWWGG | 2 cut(s) | 685, 1485 |
| TaaI | ACNGT | 5 cut(s) | 320, 386, 501, 1218, 1260 |
| TaiI | ACGT | 5 cut(s) | 222, 328, 585, 949, 1203 |
| TaqI | TCGA | 4 cut(s) | 804, 864, 1291, 1506 |
| TaqII | GACCGA | 2 cut(s) | 571, 798 |
| TasI | AATT | 6 cut(s) | 135, 460, 532, 764, 939, 1455 |
| TatI | WGTACW | 3 cut(s) | 78, 106, 521 |
| TauI | GCSGC | 2 cut(s) | 1162, 1305 |
| TfiI | GAWTC | 4 cut(s) | 959, 1267, 1336, 1417 |
| TseFI | GTSAC | 2 cut(s) | 215, 990 |
| TseI | GCWGC | 1 cut(s) | 648 |
| Tsp45I | GTSAC | 2 cut(s) | 215, 990 |
| TspGWI | ACGGA | 3 cut(s) | 369, 395, 470 |
| VpaK11BI | GGWCC | 1 cut(s) | 781 |
| XapI | RAATTY | 1 cut(s) | 460 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1205 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 5 cut(s) | 525, 1029, 1094, 1311, 1475 |
| ZrmI | AGTACT | 3 cut(s) | 80, 108, 523 |