ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 102 |
| AccIII | TCCGGA | 1 cut(s) | 499 |
| AcsI | RAATTY | 4 cut(s) | 117, 158, 208, 237 |
| AcuI | CTGAAG | 1 cut(s) | 468 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 499 |
| AflII | CTTAAG | 1 cut(s) | 44 |
| AgsI | TTSAA | 5 cut(s) | 113, 122, 326, 383, 399 |
| AluBI | AGCT | 1 cut(s) | 22 |
| AluI | AGCT | 1 cut(s) | 22 |
| Alw21I | GWGCWC | 2 cut(s) | 100, 250 |
| Alw44I | GTGCAC | 1 cut(s) | 96 |
| Aor13HI | TCCGGA | 1 cut(s) | 499 |
| ApaLI | GTGCAC | 1 cut(s) | 96 |
| ApeKI | GCWGC | 1 cut(s) | 104 |
| ApoI | RAATTY | 4 cut(s) | 117, 158, 208, 237 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 117 |
| AspLEI | GCGC | 1 cut(s) | 104 |
| AsuHPI | GGTGA | 2 cut(s) | 193, 212 |
| AsuII | TTCGAA | 1 cut(s) | 241 |
| BaeGI | GKGCMC | 2 cut(s) | 100, 493 |
| Bbv12I | GWGCWC | 2 cut(s) | 100, 250 |
| BbvI | GCAGC | 1 cut(s) | 91 |
| BccI | CCATC | 3 cut(s) | 180, 347, 497 |
| BclI | TGATCA | 1 cut(s) | 313 |
| BfaI | CTAG | 2 cut(s) | 125, 177 |
| BfrI | CTTAAG | 1 cut(s) | 44 |
| BisI | GCNGC | 1 cut(s) | 105 |
| BlsI | GCNGC | 1 cut(s) | 106 |
| Bpu14I | TTCGAA | 1 cut(s) | 241 |
| BsaAI | YACGTR | 1 cut(s) | 311 |
| BsaWI | WCCGGW | 1 cut(s) | 499 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 499 |
| Bse1I | ACTGG | 1 cut(s) | 517 |
| BseAI | TCCGGA | 1 cut(s) | 499 |
| BseGI | GGATG | 5 cut(s) | 298, 358, 508, 545, 560 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 499 |
| BseNI | ACTGG | 1 cut(s) | 517 |
| BseRI | GAGGAG | 1 cut(s) | 244 |
| BseSI | GKGCMC | 2 cut(s) | 100, 493 |
| BseXI | GCAGC | 1 cut(s) | 91 |
| Bsh1236I | CGCG | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 2 cut(s) | 100, 250 |
| BsiSI | CCGG | 1 cut(s) | 500 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 499 |
| BsmI | GAATGC | 1 cut(s) | 484 |
| Bsp119I | TTCGAA | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 3 cut(s) | 100, 250, 493 |
| Bsp13I | TCCGGA | 1 cut(s) | 499 |
| Bsp143I | GATC | 1 cut(s) | 313 |
| BspEI | TCCGGA | 1 cut(s) | 499 |
| BspFNI | CGCG | 1 cut(s) | 102 |
| BspQI | GCTCTTC | 1 cut(s) | 238 |
| BspT104I | TTCGAA | 1 cut(s) | 241 |
| BspTI | CTTAAG | 1 cut(s) | 44 |
| BsrI | ACTGG | 1 cut(s) | 517 |
| BssMI | GATC | 1 cut(s) | 313 |
| Bst6I | CTCTTC | 1 cut(s) | 238 |
| BstAFI | CTTAAG | 1 cut(s) | 44 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 104 |
| BstBAI | YACGTR | 1 cut(s) | 311 |
| BstBI | TTCGAA | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 2 cut(s) | 100, 250 |
| BstF5I | GGATG | 5 cut(s) | 298, 358, 508, 545, 560 |
| BstFNI | CGCG | 1 cut(s) | 102 |
| BstHHI | GCGC | 1 cut(s) | 104 |
| BstKTI | GATC | 1 cut(s) | 316 |
| BstMBI | GATC | 1 cut(s) | 313 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 104, 173, 488 |
| BstSLI | GKGCMC | 2 cut(s) | 100, 493 |
| BstUI | CGCG | 1 cut(s) | 102 |
| BstV1I | GCAGC | 1 cut(s) | 91 |
| BtsCI | GGATG | 5 cut(s) | 298, 358, 508, 545, 560 |
| Cac8I | GCNNGC | 2 cut(s) | 100, 250 |
| CfoI | GCGC | 1 cut(s) | 104 |
| CviAII | CATG | 2 cut(s) | 317, 475 |
| CviJI | RGCY | 5 cut(s) | 22, 128, 176, 216, 531 |
| CviKI_1 | RGCY | 5 cut(s) | 22, 128, 176, 216, 531 |
| DpnI | GATC | 1 cut(s) | 315 |
| DpnII | GATC | 1 cut(s) | 313 |
| DraI | TTTAAA | 1 cut(s) | 33 |
| Eam1104I | CTCTTC | 1 cut(s) | 238 |
| EarI | CTCTTC | 1 cut(s) | 238 |
| Eco57I | CTGAAG | 1 cut(s) | 468 |
| FaeI | CATG | 2 cut(s) | 320, 478 |
| FaiI | YATR | 7 cut(s) | 81, 131, 141, 225, 318, 476, 510 |
| FatI | CATG | 2 cut(s) | 316, 474 |
| FbaI | TGATCA | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 1 cut(s) | 105 |
| FokI | GGATG | 5 cut(s) | 305, 365, 515, 552, 567 |
| Fsp4HI | GCNGC | 1 cut(s) | 105 |
| FspBI | CTAG | 2 cut(s) | 125, 177 |
| GlaI | GCGC | 1 cut(s) | 103 |
| GluI | GCNGC | 1 cut(s) | 105 |
| HapII | CCGG | 1 cut(s) | 500 |
| HhaI | GCGC | 1 cut(s) | 104 |
| Hin1II | CATG | 2 cut(s) | 320, 478 |
| Hin6I | GCGC | 1 cut(s) | 102 |
| HinP1I | GCGC | 1 cut(s) | 102 |
| HindIII | AAGCTT | 1 cut(s) | 20 |
| HinfI | GANTC | 1 cut(s) | 410 |
| HpaII | CCGG | 1 cut(s) | 500 |
| HphI | GGTGA | 2 cut(s) | 193, 212 |
| Hpy166II | GTNNAC | 2 cut(s) | 98, 147 |
| Hpy188I | TCNGA | 3 cut(s) | 349, 409, 415 |
| Hpy188III | TCNNGA | 1 cut(s) | 500 |
| Hpy8I | GTNNAC | 2 cut(s) | 98, 147 |
| HpyAV | CCTTC | 3 cut(s) | 166, 191, 405 |
| HpyCH4IV | ACGT | 1 cut(s) | 310 |
| HpyCH4V | TGCA | 2 cut(s) | 98, 273 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 104, 173, 488 |
| HpySE526I | ACGT | 1 cut(s) | 310 |
| Hsp92II | CATG | 2 cut(s) | 320, 478 |
| HspAI | GCGC | 1 cut(s) | 102 |
| Kpn2I | TCCGGA | 1 cut(s) | 499 |
| Ksp22I | TGATCA | 1 cut(s) | 313 |
| Kzo9I | GATC | 1 cut(s) | 313 |
| LguI | GCTCTTC | 1 cut(s) | 238 |
| LmnI | GCTCC | 1 cut(s) | 257 |
| LpnPI | CCDG | 6 cut(s) | 148, 198, 357, 498, 513, 513 |
| Lsp1109I | GCAGC | 1 cut(s) | 91 |
| MaeI | CTAG | 2 cut(s) | 125, 177 |
| MaeII | ACGT | 1 cut(s) | 310 |
| MaeIII | GTNAC | 2 cut(s) | 190, 200 |
| MalI | GATC | 1 cut(s) | 315 |
| MboI | GATC | 1 cut(s) | 313 |
| MboII | GAAGA | 2 cut(s) | 255, 461 |
| MhlI | GDGCHC | 3 cut(s) | 100, 250, 493 |
| MluCI | AATT | 6 cut(s) | 117, 158, 208, 237, 418, 517 |
| MmeI | TCCRAC | 1 cut(s) | 532 |
| MnlI | CCTC | 2 cut(s) | 265, 343 |
| MroI | TCCGGA | 1 cut(s) | 499 |
| MroXI | GAANNNNTTC | 1 cut(s) | 117 |
| MseI | TTAA | 5 cut(s) | 24, 32, 45, 60, 300 |
| MspCI | CTTAAG | 1 cut(s) | 44 |
| MspI | CCGG | 1 cut(s) | 500 |
| Mva1269I | GAATGC | 1 cut(s) | 484 |
| MvnI | CGCG | 1 cut(s) | 102 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 104, 173, 488 |
| NdeII | GATC | 1 cut(s) | 313 |
| NlaIII | CATG | 2 cut(s) | 320, 478 |
| NmuCI | GTSAC | 1 cut(s) | 200 |
| NspV | TTCGAA | 1 cut(s) | 241 |
| PciSI | GCTCTTC | 1 cut(s) | 238 |
| PctI | GAATGC | 1 cut(s) | 484 |
| PdmI | GAANNNNTTC | 1 cut(s) | 117 |
| PfeI | GAWTC | 1 cut(s) | 410 |
| PkrI | GCNGC | 1 cut(s) | 106 |
| Ppu21I | YACGTR | 1 cut(s) | 311 |
| SapI | GCTCTTC | 1 cut(s) | 238 |
| SaqAI | TTAA | 5 cut(s) | 24, 32, 45, 60, 300 |
| SatI | GCNGC | 1 cut(s) | 105 |
| Sau3AI | GATC | 1 cut(s) | 313 |
| SduI | GDGCHC | 3 cut(s) | 100, 250, 493 |
| SetI | ASST | 4 cut(s) | 24, 40, 202, 313 |
| SfuI | TTCGAA | 1 cut(s) | 241 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| Sse9I | AATT | 6 cut(s) | 117, 158, 208, 237, 418, 517 |
| SspI | AATATT | 2 cut(s) | 304, 361 |
| SspMI | CTAG | 2 cut(s) | 125, 177 |
| TaiI | ACGT | 1 cut(s) | 313 |
| TaqI | TCGA | 1 cut(s) | 241 |
| TasI | AATT | 6 cut(s) | 117, 158, 208, 237, 418, 517 |
| TfiI | GAWTC | 1 cut(s) | 410 |
| Tru1I | TTAA | 5 cut(s) | 24, 32, 45, 60, 300 |
| Tru9I | TTAA | 5 cut(s) | 24, 32, 45, 60, 300 |
| TseFI | GTSAC | 1 cut(s) | 200 |
| TseI | GCWGC | 1 cut(s) | 104 |
| Tsp45I | GTSAC | 1 cut(s) | 200 |
| TspDTI | ATGAA | 3 cut(s) | 68, 212, 491 |
| TspGWI | ACGGA | 1 cut(s) | 209 |
| Vha464I | CTTAAG | 1 cut(s) | 44 |
| VneI | GTGCAC | 1 cut(s) | 96 |
| XapI | RAATTY | 4 cut(s) | 117, 158, 208, 237 |
| XmnI | GAANNNNTTC | 1 cut(s) | 117 |
| XspI | CTAG | 2 cut(s) | 125, 177 |