ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_8 | PF13855 | 84 - 143 | 7.4e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 109 - 208 | 4.2e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 170 - 258 | 2.8e-08 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 181 - 239 | 6.4e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 198 - 283 | 6.8e-08 | Leucine-rich repeat region |
| LRR_4 | PF12799 | 228 - 268 | 1.5e-06 | Leucine Rich repeats (2 copies) |
| LRR_14 | PF23598 | 246 - 350 | 8.4e-10 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 419 - 479 | 2.3e-06 | Leucine rich repeat |
| LRR_8 | PF13855 | 444 - 503 | 7.8e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 502 - 593 | 2.6e-08 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 540 - 599 | 3.4e-08 | Leucine rich repeat |
| Pkinase | PF00069 | 712 - 970 | 3.2e-41 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 713 - 972 | 1e-37 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2240 |
| Acc36I | ACCTGC | 1 cut(s) | 667 |
| Acc65I | GGTACC | 1 cut(s) | 2564 |
| AccB1I | GGYRCC | 3 cut(s) | 1175, 2286, 2564 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 212, 452 |
| AccI | GTMKAC | 3 cut(s) | 1128, 1200, 2163 |
| AccII | CGCG | 1 cut(s) | 2610 |
| AccIII | TCCGGA | 2 cut(s) | 802, 2153 |
| AciI | CCGC | 3 cut(s) | 1210, 2760, 2882 |
| AclWI | GGATC | 6 cut(s) | 843, 1048, 1482, 1665, 2145, 2158 |
| AcuI | CTGAAG | 3 cut(s) | 1185, 1437, 2801 |
| AcyI | GRCGYC | 1 cut(s) | 2237 |
| AfaI | GTAC | 6 cut(s) | 289, 981, 1968, 2220, 2566, 2903 |
| AflII | CTTAAG | 1 cut(s) | 533 |
| AjnI | CCWGG | 1 cut(s) | 2888 |
| AleI | CACNNNNGTG | 2 cut(s) | 1240, 2426 |
| Alw21I | GWGCWC | 1 cut(s) | 2423 |
| Alw26I | GTCTC | 3 cut(s) | 2228, 2496, 2763 |
| AlwI | GGATC | 6 cut(s) | 843, 1048, 1482, 1665, 2145, 2158 |
| Ama87I | CYCGRG | 1 cut(s) | 1652 |
| Aor13HI | TCCGGA | 2 cut(s) | 802, 2153 |
| AoxI | GGCC | 2 cut(s) | 99, 2891 |
| ApeKI | GCWGC | 4 cut(s) | 1299, 2176, 2187, 2722 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2249 |
| Asp718I | GGTACC | 1 cut(s) | 2564 |
| AspLEI | GCGC | 1 cut(s) | 2612 |
| AspS9I | GGNCC | 4 cut(s) | 100, 475, 1082, 1802 |
| AsuC2I | CCSGG | 1 cut(s) | 2242 |
| AsuHPI | GGTGA | 8 cut(s) | 29, 42, 473, 755, 1227, 1238, 1384, 2440 |
| AsuII | TTCGAA | 1 cut(s) | 1749 |
| AsuNHI | GCTAGC | 1 cut(s) | 2854 |
| AvaI | CYCGRG | 1 cut(s) | 1652 |
| AvaII | GGWCC | 3 cut(s) | 475, 1082, 1802 |
| BaeGI | GKGCMC | 1 cut(s) | 2272 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2548, 2581 |
| BamHI | GGATCC | 1 cut(s) | 2150 |
| BanI | GGYRCC | 3 cut(s) | 1175, 2286, 2564 |
| BanII | GRGCYC | 1 cut(s) | 2547 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2359, 2391 |
| BbsI | GAAGAC | 3 cut(s) | 408, 449, 1924 |
| Bbv12I | GWGCWC | 1 cut(s) | 2423 |
| BbvCI | CCTCAGC | 1 cut(s) | 266 |
| BbvI | GCAGC | 4 cut(s) | 1311, 2163, 2199, 2734 |
| BceAI | ACGGC | 3 cut(s) | 1017, 1958, 2300 |
| BciT130I | CCWGG | 1 cut(s) | 2890 |
| BciVI | GTATCC | 1 cut(s) | 985 |
| BcnI | CCSGG | 1 cut(s) | 2242 |
| BcoDI | GTCTC | 3 cut(s) | 2228, 2496, 2763 |
| BfmI | CTRYAG | 1 cut(s) | 839 |
| BfrI | CTTAAG | 1 cut(s) | 533 |
| BfuAI | ACCTGC | 1 cut(s) | 667 |
| BfuI | GTATCC | 1 cut(s) | 985 |
| BisI | GCNGC | 5 cut(s) | 1210, 1300, 2177, 2188, 2723 |
| BlsI | GCNGC | 5 cut(s) | 1211, 1301, 2178, 2189, 2724 |
| BmcAI | AGTACT | 1 cut(s) | 2220 |
| Bme1390I | CCNGG | 2 cut(s) | 2242, 2890 |
| Bme18I | GGWCC | 3 cut(s) | 475, 1082, 1802 |
| BmeT110I | CYCGRG | 1 cut(s) | 1652 |
| BmgT120I | GGNCC | 4 cut(s) | 100, 475, 1082, 1802 |
| BmrFI | CCNGG | 2 cut(s) | 2242, 2890 |
| BmrI | ACTGGG | 2 cut(s) | 165, 2210 |
| BmsI | GCATC | 4 cut(s) | 352, 1311, 2113, 2506 |
| BmtI | GCTAGC | 1 cut(s) | 2858 |
| BmuI | ACTGGG | 2 cut(s) | 165, 2210 |
| BpiI | GAAGAC | 3 cut(s) | 408, 449, 1924 |
| BpmI | CTGGAG | 1 cut(s) | 2437 |
| Bpu10I | CCTNAGC | 3 cut(s) | 266, 1205, 2384 |
| Bpu14I | TTCGAA | 1 cut(s) | 1749 |
| BpuEI | CTTGAG | 6 cut(s) | 491, 913, 950, 1004, 1657, 2898 |
| BpuMI | CCSGG | 1 cut(s) | 2242 |
| BsaHI | GRCGYC | 1 cut(s) | 2237 |
| BsaJI | CCNNGG | 3 cut(s) | 1033, 1256, 1989 |
| BsaWI | WCCGGW | 3 cut(s) | 802, 2153, 2289 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 151, 181 |
| Bse1I | ACTGG | 8 cut(s) | 120, 171, 1300, 1792, 2216, 2415, 2420, 2706 |
| Bse3DI | GCAATG | 4 cut(s) | 217, 1855, 1873, 2041 |
| BseAI | TCCGGA | 2 cut(s) | 802, 2153 |
| BseBI | CCWGG | 1 cut(s) | 2890 |
| BseDI | CCNNGG | 3 cut(s) | 1033, 1256, 1989 |
| BseGI | GGATG | 7 cut(s) | 366, 942, 1302, 2756, 2791, 2878, 2924 |
| BseMI | GCAATG | 4 cut(s) | 217, 1855, 1873, 2041 |
| BseMII | CTCAG | 7 cut(s) | 280, 389, 537, 548, 1302, 1400, 2375 |
| BseNI | ACTGG | 8 cut(s) | 120, 171, 1300, 1792, 2216, 2415, 2420, 2706 |
| BseSI | GKGCMC | 1 cut(s) | 2272 |
| BseXI | GCAGC | 4 cut(s) | 1311, 2163, 2199, 2734 |
| BseYI | CCCAGC | 1 cut(s) | 1626 |
| Bsh1236I | CGCG | 1 cut(s) | 2610 |
| BshFI | GGCC | 2 cut(s) | 101, 2893 |
| BshNI | GGYRCC | 3 cut(s) | 1175, 2286, 2564 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2423 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1652 |
| BsiSI | CCGG | 5 cut(s) | 587, 803, 2154, 2242, 2290 |
| BslFI | GGGAC | 5 cut(s) | 1260, 1609, 1788, 1793, 2224 |
| BsmAI | GTCTC | 3 cut(s) | 2228, 2496, 2763 |
| BsmBI | CGTCTC | 1 cut(s) | 2228 |
| BsmFI | GGGAC | 5 cut(s) | 1260, 1609, 1788, 1793, 2224 |
| BsnI | GGCC | 2 cut(s) | 101, 2893 |
| BsoBI | CYCGRG | 1 cut(s) | 1652 |
| Bsp119I | TTCGAA | 1 cut(s) | 1749 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2272, 2423, 2547 |
| Bsp13I | TCCGGA | 2 cut(s) | 802, 2153 |
| Bsp1407I | TGTACA | 1 cut(s) | 2901 |
| BspACI | CCGC | 3 cut(s) | 1210, 2760, 2882 |
| BspANI | GGCC | 2 cut(s) | 101, 2893 |
| BspCNI | CTCAG | 7 cut(s) | 279, 388, 538, 549, 1303, 1401, 2376 |
| BspEI | TCCGGA | 2 cut(s) | 802, 2153 |
| BspFNI | CGCG | 1 cut(s) | 2610 |
| BspHI | TCATGA | 1 cut(s) | 517 |
| BspMI | ACCTGC | 1 cut(s) | 667 |
| BspOI | GCTAGC | 1 cut(s) | 2858 |
| BspPI | GGATC | 6 cut(s) | 843, 1048, 1482, 1665, 2145, 2158 |
| BspT104I | TTCGAA | 1 cut(s) | 1749 |
| BspT107I | GGYRCC | 3 cut(s) | 1175, 2286, 2564 |
| BspTI | CTTAAG | 1 cut(s) | 533 |
| BsrDI | GCAATG | 4 cut(s) | 217, 1855, 1873, 2041 |
| BsrGI | TGTACA | 1 cut(s) | 2901 |
| BsrI | ACTGG | 8 cut(s) | 120, 171, 1300, 1792, 2216, 2415, 2420, 2706 |
| BssECI | CCNNGG | 3 cut(s) | 1033, 1256, 1989 |
| BssNAI | GTATAC | 1 cut(s) | 2164 |
| BssNI | GRCGYC | 1 cut(s) | 2237 |
| BssT1I | CCWWGG | 1 cut(s) | 1989 |
| Bst1107I | GTATAC | 1 cut(s) | 2164 |
| Bst2UI | CCWGG | 1 cut(s) | 2890 |
| Bst4CI | ACNGT | 4 cut(s) | 241, 843, 979, 1226 |
| Bst6I | CTCTTC | 1 cut(s) | 297 |
| BstACI | GRCGYC | 1 cut(s) | 2237 |
| BstAFI | CTTAAG | 1 cut(s) | 533 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 231 |
| BstAUI | TGTACA | 1 cut(s) | 2901 |
| BstBI | TTCGAA | 1 cut(s) | 1749 |
| BstC8I | GCNNGC | 9 cut(s) | 19, 552, 2608, 2614, 2643, 2697, 2727, 2856, 2866 |
| BstDSI | CCRYGG | 1 cut(s) | 1033 |
| BstEII | GGTNACC | 1 cut(s) | 2659 |
| BstF5I | GGATG | 7 cut(s) | 366, 942, 1302, 2756, 2791, 2878, 2924 |
| BstFNI | CGCG | 1 cut(s) | 2610 |
| BstHHI | GCGC | 1 cut(s) | 2612 |
| BstMAI | GTCTC | 3 cut(s) | 2228, 2496, 2763 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 231, 678, 1979, 2890 |
| BstNI | CCWGG | 1 cut(s) | 2890 |
| BstNSI | RCATGY | 2 cut(s) | 2327, 2868 |
| BstPI | GGTNACC | 1 cut(s) | 2659 |
| BstSCI | CCNGG | 2 cut(s) | 2240, 2888 |
| BstSFI | CTRYAG | 1 cut(s) | 839 |
| BstSLI | GKGCMC | 1 cut(s) | 2272 |
| BstUI | CGCG | 1 cut(s) | 2610 |
| BstV1I | GCAGC | 4 cut(s) | 1311, 2163, 2199, 2734 |
| BstV2I | GAAGAC | 3 cut(s) | 408, 449, 1924 |
| BstX2I | RGATCY | 3 cut(s) | 835, 1474, 2150 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1007 |
| BstYI | RGATCY | 3 cut(s) | 835, 1474, 2150 |
| BstZ17I | GTATAC | 1 cut(s) | 2164 |
| BsuI | GTATCC | 1 cut(s) | 985 |
| BsuRI | GGCC | 2 cut(s) | 101, 2893 |
| BtgI | CCRYGG | 1 cut(s) | 1033 |
| BtsCI | GGATG | 7 cut(s) | 366, 942, 1302, 2756, 2791, 2878, 2924 |
| BtsI | GCAGTG | 2 cut(s) | 1043, 2205 |
| BtsIMutI | CAGTG | 4 cut(s) | 237, 1043, 2205, 2699 |
| BveI | ACCTGC | 1 cut(s) | 667 |
| Cac8I | GCNNGC | 9 cut(s) | 19, 552, 2608, 2614, 2643, 2697, 2727, 2856, 2866 |
| CciI | TCATGA | 1 cut(s) | 517 |
| CfoI | GCGC | 1 cut(s) | 2612 |
| Cfr13I | GGNCC | 4 cut(s) | 100, 475, 1082, 1802 |
| Csp6I | GTAC | 6 cut(s) | 288, 980, 1967, 2219, 2565, 2902 |
| CviQI | GTAC | 6 cut(s) | 288, 980, 1967, 2219, 2565, 2902 |
| DraI | TTTAAA | 1 cut(s) | 2580 |
| Eam1104I | CTCTTC | 1 cut(s) | 297 |
| EarI | CTCTTC | 1 cut(s) | 297 |
| EciI | GGCGGA | 1 cut(s) | 2749 |
| Eco130I | CCWWGG | 1 cut(s) | 1989 |
| Eco24I | GRGCYC | 1 cut(s) | 2547 |
| Eco47I | GGWCC | 3 cut(s) | 475, 1082, 1802 |
| Eco57I | CTGAAG | 3 cut(s) | 1185, 1437, 2801 |
| Eco88I | CYCGRG | 1 cut(s) | 1652 |
| Eco91I | GGTNACC | 1 cut(s) | 2659 |
| EcoO109I | RGGNCCY | 3 cut(s) | 100, 475, 1802 |
| EcoO65I | GGTNACC | 1 cut(s) | 2659 |
| EcoRI | GAATTC | 2 cut(s) | 2069, 2249 |
| EcoRII | CCWGG | 1 cut(s) | 2888 |
| EcoT14I | CCWWGG | 1 cut(s) | 1989 |
| EcoT22I | ATGCAT | 1 cut(s) | 1761 |
| EcoT38I | GRGCYC | 1 cut(s) | 2547 |
| ErhI | CCWWGG | 1 cut(s) | 1989 |
| Esp3I | CGTCTC | 1 cut(s) | 2228 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 276, 308 |
| FaqI | GGGAC | 5 cut(s) | 1260, 1609, 1788, 1793, 2224 |
| FauNDI | CATATG | 1 cut(s) | 2620 |
| FblI | GTMKAC | 3 cut(s) | 1128, 1200, 2163 |
| Fnu4HI | GCNGC | 5 cut(s) | 1210, 1300, 2177, 2188, 2723 |
| FokI | GGATG | 7 cut(s) | 353, 929, 1289, 2743, 2798, 2865, 2911 |
| FriOI | GRGCYC | 1 cut(s) | 2547 |
| Fsp4HI | GCNGC | 5 cut(s) | 1210, 1300, 2177, 2188, 2723 |
| GlaI | GCGC | 1 cut(s) | 2611 |
| GluI | GCNGC | 5 cut(s) | 1210, 1300, 2177, 2188, 2723 |
| GsaI | CCCAGC | 1 cut(s) | 1630 |
| GsuI | CTGGAG | 1 cut(s) | 2437 |
| HaeIII | GGCC | 2 cut(s) | 101, 2893 |
| HapII | CCGG | 5 cut(s) | 587, 803, 2154, 2242, 2290 |
| HhaI | GCGC | 1 cut(s) | 2612 |
| Hin1I | GRCGYC | 1 cut(s) | 2237 |
| Hin6I | GCGC | 1 cut(s) | 2610 |
| HinP1I | GCGC | 1 cut(s) | 2610 |
| HincII | GTYRAC | 4 cut(s) | 253, 530, 975, 1497 |
| HindII | GTYRAC | 4 cut(s) | 253, 530, 975, 1497 |
| HindIII | AAGCTT | 1 cut(s) | 2573 |
| HpaII | CCGG | 5 cut(s) | 587, 803, 2154, 2242, 2290 |
| HphI | GGTGA | 8 cut(s) | 29, 42, 473, 755, 1227, 1238, 1384, 2440 |
| HpyCH4III | ACNGT | 4 cut(s) | 241, 843, 979, 1226 |
| HpyCH4IV | ACGT | 3 cut(s) | 1194, 2237, 2932 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 231, 678, 1979, 2890 |
| HpySE526I | ACGT | 3 cut(s) | 1194, 2237, 2932 |
| Hsp92I | GRCGYC | 1 cut(s) | 2237 |
| HspAI | GCGC | 1 cut(s) | 2610 |
| KflI | GGGWCCC | 1 cut(s) | 1802 |
| Kpn2I | TCCGGA | 2 cut(s) | 802, 2153 |
| KpnI | GGTACC | 1 cut(s) | 2568 |
| LmnI | GCTCC | 3 cut(s) | 872, 944, 2418 |
| Lsp1109I | GCAGC | 4 cut(s) | 1311, 2163, 2199, 2734 |
| LweI | GCATC | 4 cut(s) | 352, 1311, 2113, 2506 |
| MaeII | ACGT | 3 cut(s) | 1194, 2237, 2932 |
| MaeIII | GTNAC | 6 cut(s) | 743, 896, 1442, 1535, 1640, 2659 |
| MfeI | CAATTG | 5 cut(s) | 882, 1073, 1601, 1983, 2859 |
| MflI | RGATCY | 3 cut(s) | 835, 1474, 2150 |
| MhlI | GDGCHC | 3 cut(s) | 2272, 2423, 2547 |
| MlyI | GAGTC | 4 cut(s) | 1134, 1420, 1523, 2746 |
| MmeI | TCCRAC | 4 cut(s) | 197, 223, 969, 1975 |
| Mph1103I | ATGCAT | 1 cut(s) | 1761 |
| MroI | TCCGGA | 2 cut(s) | 802, 2153 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2249 |
| MseI | TTAA | 5 cut(s) | 500, 534, 1931, 2579, 2979 |
| MslI | CAYNNNNRTG | 3 cut(s) | 486, 1240, 2426 |
| MspA1I | CMGCKG | 1 cut(s) | 2725 |
| MspCI | CTTAAG | 1 cut(s) | 533 |
| MspI | CCGG | 5 cut(s) | 587, 803, 2154, 2242, 2290 |
| MspR9I | CCNGG | 2 cut(s) | 2242, 2890 |
| MunI | CAATTG | 5 cut(s) | 882, 1073, 1601, 1983, 2859 |
| MvaI | CCWGG | 1 cut(s) | 2890 |
| MvnI | CGCG | 1 cut(s) | 2610 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 231, 678, 1979, 2890 |
| NciI | CCSGG | 1 cut(s) | 2242 |
| NdeI | CATATG | 1 cut(s) | 2620 |
| NheI | GCTAGC | 1 cut(s) | 2854 |
| NmuCI | GTSAC | 2 cut(s) | 743, 1442 |
| NsiI | ATGCAT | 1 cut(s) | 1761 |
| NspI | RCATGY | 2 cut(s) | 2327, 2868 |
| NspV | TTCGAA | 1 cut(s) | 1749 |
| OliI | CACNNNNGTG | 2 cut(s) | 1240, 2426 |
| PaeI | GCATGC | 1 cut(s) | 2868 |
| PaeR7I | CTCGAG | 1 cut(s) | 1652 |
| PagI | TCATGA | 1 cut(s) | 517 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2249 |
| PfeI | GAWTC | 6 cut(s) | 511, 583, 697, 853, 961, 1375 |
| PflFI | GACNNNGTC | 1 cut(s) | 1251 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 212, 452 |
| PfoI | TCCNGGA | 1 cut(s) | 2240 |
| PkrI | GCNGC | 5 cut(s) | 1211, 1301, 2178, 2189, 2724 |
| PleI | GAGTC | 4 cut(s) | 1133, 1419, 1522, 2746 |
| PpsI | GAGTC | 4 cut(s) | 1133, 1419, 1522, 2746 |
| PpuMI | RGGWCCY | 2 cut(s) | 475, 1802 |
| Psp5II | RGGWCCY | 2 cut(s) | 475, 1802 |
| Psp6I | CCWGG | 1 cut(s) | 2888 |
| PspEI | GGTNACC | 1 cut(s) | 2659 |
| PspFI | CCCAGC | 1 cut(s) | 1626 |
| PspGI | CCWGG | 1 cut(s) | 2888 |
| PspPI | GGNCC | 4 cut(s) | 100, 475, 1082, 1802 |
| PspPPI | RGGWCCY | 2 cut(s) | 475, 1802 |
| PspXI | VCTCGAGB | 1 cut(s) | 1652 |
| PsuI | RGATCY | 3 cut(s) | 835, 1474, 2150 |
| PsyI | GACNNNGTC | 1 cut(s) | 1251 |
| PvuII | CAGCTG | 1 cut(s) | 2725 |
| RsaI | GTAC | 6 cut(s) | 289, 981, 1968, 2220, 2566, 2903 |
| RsaNI | GTAC | 6 cut(s) | 288, 980, 1967, 2219, 2565, 2902 |
| RseI | CAYNNNNRTG | 3 cut(s) | 486, 1240, 2426 |
| SaqAI | TTAA | 5 cut(s) | 500, 534, 1931, 2579, 2979 |
| SatI | GCNGC | 5 cut(s) | 1210, 1300, 2177, 2188, 2723 |
| Sau96I | GGNCC | 4 cut(s) | 100, 475, 1082, 1802 |
| ScaI | AGTACT | 1 cut(s) | 2220 |
| SchI | GAGTC | 4 cut(s) | 1134, 1420, 1523, 2746 |
| ScrFI | CCNGG | 2 cut(s) | 2242, 2890 |
| SduI | GDGCHC | 3 cut(s) | 2272, 2423, 2547 |
| SfaNI | GCATC | 4 cut(s) | 352, 1311, 2113, 2506 |
| SfcI | CTRYAG | 1 cut(s) | 839 |
| Sfr274I | CTCGAG | 1 cut(s) | 1652 |
| SfuI | TTCGAA | 1 cut(s) | 1749 |
| SinI | GGWCC | 3 cut(s) | 475, 1082, 1802 |
| SlaI | CTCGAG | 1 cut(s) | 1652 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 486, 1240, 2426 |
| SmlI | CTYRAG | 8 cut(s) | 470, 533, 892, 965, 983, 1636, 1652, 2913 |
| SmoI | CTYRAG | 8 cut(s) | 470, 533, 892, 965, 983, 1636, 1652, 2913 |
| SphI | GCATGC | 1 cut(s) | 2868 |
| SsiI | CCGC | 3 cut(s) | 1210, 2760, 2882 |
| SspI | AATATT | 2 cut(s) | 1027, 1708 |
| StyD4I | CCNGG | 2 cut(s) | 2240, 2888 |
| StyI | CCWWGG | 1 cut(s) | 1989 |
| TaaI | ACNGT | 4 cut(s) | 241, 843, 979, 1226 |
| TaiI | ACGT | 3 cut(s) | 1197, 2240, 2935 |
| TatI | WGTACW | 4 cut(s) | 979, 1966, 2218, 2901 |
| TauI | GCSGC | 1 cut(s) | 1212 |
| TfiI | GAWTC | 6 cut(s) | 511, 583, 697, 853, 961, 1375 |
| Tru1I | TTAA | 5 cut(s) | 500, 534, 1931, 2579, 2979 |
| Tru9I | TTAA | 5 cut(s) | 500, 534, 1931, 2579, 2979 |
| TscAI | CASTG | 4 cut(s) | 244, 1050, 2205, 2706 |
| TseFI | GTSAC | 2 cut(s) | 743, 1442 |
| TseI | GCWGC | 4 cut(s) | 1299, 2176, 2187, 2722 |
| Tsp45I | GTSAC | 2 cut(s) | 743, 1442 |
| TspGWI | ACGGA | 2 cut(s) | 347, 908 |
| TspRI | CASTG | 4 cut(s) | 244, 1050, 2205, 2706 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1251 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 212, 452 |
| Vha464I | CTTAAG | 1 cut(s) | 533 |
| VpaK11BI | GGWCC | 3 cut(s) | 475, 1082, 1802 |
| XbaI | TCTAGA | 2 cut(s) | 571, 2945 |
| XceI | RCATGY | 2 cut(s) | 2327, 2868 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 213 |
| XhoI | CTCGAG | 1 cut(s) | 1652 |
| XmiI | GTMKAC | 3 cut(s) | 1128, 1200, 2163 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2249 |
| ZraI | GACGTC | 1 cut(s) | 2238 |
| ZrmI | AGTACT | 1 cut(s) | 2220 |
| Zsp2I | ATGCAT | 1 cut(s) | 1761 |