ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 117 - 200 | 1.6e-19 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 173 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 949 |
| AccBSI | CCGCTC | 1 cut(s) | 184 |
| AciI | CCGC | 4 cut(s) | 182, 472, 499, 915 |
| AclWI | GGATC | 3 cut(s) | 62, 755, 905 |
| AcsI | RAATTY | 1 cut(s) | 111 |
| AcyI | GRCGYC | 1 cut(s) | 174 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 321, 949 |
| AflII | CTTAAG | 1 cut(s) | 20 |
| AgsI | TTSAA | 2 cut(s) | 378, 826 |
| AhlI | ACTAGT | 1 cut(s) | 923 |
| AluBI | AGCT | 8 cut(s) | 170, 248, 330, 353, 461, 706, 811, 841 |
| AluI | AGCT | 8 cut(s) | 170, 248, 330, 353, 461, 706, 811, 841 |
| AlwI | GGATC | 3 cut(s) | 62, 755, 905 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 917 |
| AoxI | GGCC | 2 cut(s) | 143, 323 |
| ApeKI | GCWGC | 4 cut(s) | 475, 496, 763, 917 |
| ApoI | RAATTY | 1 cut(s) | 111 |
| AspLEI | GCGC | 1 cut(s) | 176 |
| AspS9I | GGNCC | 1 cut(s) | 143 |
| AsuII | TTCGAA | 1 cut(s) | 218 |
| AxyI | CCTNAGG | 1 cut(s) | 337 |
| BanI | GGYRCC | 1 cut(s) | 173 |
| BbsI | GAAGAC | 2 cut(s) | 306, 605 |
| BbvI | GCAGC | 4 cut(s) | 462, 508, 750, 904 |
| BccI | CCATC | 3 cut(s) | 41, 526, 858 |
| BceAI | ACGGC | 1 cut(s) | 39 |
| BcuI | ACTAGT | 1 cut(s) | 923 |
| BfaI | CTAG | 4 cut(s) | 327, 716, 753, 924 |
| BfoI | RGCGCY | 1 cut(s) | 177 |
| BfrI | CTTAAG | 1 cut(s) | 20 |
| BisI | GCNGC | 7 cut(s) | 473, 476, 497, 500, 764, 915, 918 |
| BlpI | GCTNAGC | 1 cut(s) | 837 |
| BlsI | GCNGC | 7 cut(s) | 474, 477, 498, 501, 765, 916, 919 |
| BmgT120I | GGNCC | 1 cut(s) | 143 |
| BmiI | GGNNCC | 1 cut(s) | 175 |
| BmsI | GCATC | 3 cut(s) | 478, 571, 787 |
| BpiI | GAAGAC | 2 cut(s) | 306, 605 |
| Bpu10I | CCTNAGC | 2 cut(s) | 6, 777 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 837 |
| Bpu14I | TTCGAA | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 2 cut(s) | 243, 671 |
| BsaHI | GRCGYC | 1 cut(s) | 174 |
| BsaJI | CCNNGG | 1 cut(s) | 638 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 321, 949 |
| Bse1I | ACTGG | 1 cut(s) | 960 |
| Bse21I | CCTNAGG | 1 cut(s) | 337 |
| Bse3DI | GCAATG | 1 cut(s) | 491 |
| BseDI | CCNNGG | 1 cut(s) | 638 |
| BseGI | GGATG | 4 cut(s) | 52, 802, 850, 970 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 321, 949 |
| BseMI | GCAATG | 1 cut(s) | 491 |
| BseMII | CTCAG | 1 cut(s) | 351 |
| BseNI | ACTGG | 1 cut(s) | 960 |
| BseRI | GAGGAG | 3 cut(s) | 322, 325, 668 |
| BseXI | GCAGC | 4 cut(s) | 462, 508, 750, 904 |
| BseYI | CCCAGC | 1 cut(s) | 801 |
| BshFI | GGCC | 2 cut(s) | 145, 325 |
| BshNI | GGYRCC | 1 cut(s) | 173 |
| BslFI | GGGAC | 1 cut(s) | 564 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 321, 949 |
| BsmFI | GGGAC | 1 cut(s) | 564 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsnI | GGCC | 2 cut(s) | 145, 325 |
| Bsp119I | TTCGAA | 1 cut(s) | 218 |
| Bsp143I | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 837 |
| BspACI | CCGC | 4 cut(s) | 182, 472, 499, 915 |
| BspANI | GGCC | 2 cut(s) | 145, 325 |
| BspCNI | CTCAG | 1 cut(s) | 350 |
| BspLI | GGNNCC | 1 cut(s) | 175 |
| BspPI | GGATC | 3 cut(s) | 62, 755, 905 |
| BspQI | GCTCTTC | 1 cut(s) | 468 |
| BspT104I | TTCGAA | 1 cut(s) | 218 |
| BspT107I | GGYRCC | 1 cut(s) | 173 |
| BspTI | CTTAAG | 1 cut(s) | 20 |
| BsrBI | CCGCTC | 1 cut(s) | 184 |
| BsrDI | GCAATG | 1 cut(s) | 491 |
| BsrI | ACTGG | 1 cut(s) | 960 |
| BssECI | CCNNGG | 1 cut(s) | 638 |
| BssMI | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| BssNI | GRCGYC | 1 cut(s) | 174 |
| BssT1I | CCWWGG | 1 cut(s) | 638 |
| Bst4CI | ACNGT | 1 cut(s) | 578 |
| Bst6I | CTCTTC | 1 cut(s) | 468 |
| BstACI | GRCGYC | 1 cut(s) | 174 |
| BstAFI | CTTAAG | 1 cut(s) | 20 |
| BstBI | TTCGAA | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 1 cut(s) | 172 |
| BstDEI | CTNAG | 4 cut(s) | 6, 337, 777, 837 |
| BstF5I | GGATG | 4 cut(s) | 52, 802, 850, 970 |
| BstH2I | RGCGCY | 1 cut(s) | 177 |
| BstHHI | GCGC | 1 cut(s) | 176 |
| BstKTI | GATC | 5 cut(s) | 70, 81, 391, 750, 900 |
| BstMBI | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 359, 797 |
| BstNSI | RCATGY | 1 cut(s) | 203 |
| BstV1I | GCAGC | 4 cut(s) | 462, 508, 750, 904 |
| BstV2I | GAAGAC | 2 cut(s) | 306, 605 |
| BstX2I | RGATCY | 1 cut(s) | 897 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 95 |
| BstYI | RGATCY | 1 cut(s) | 897 |
| Bsu36I | CCTNAGG | 1 cut(s) | 337 |
| BsuRI | GGCC | 2 cut(s) | 145, 325 |
| BtsCI | GGATG | 4 cut(s) | 52, 802, 850, 970 |
| BtsIMutI | CAGTG | 1 cut(s) | 574 |
| Cac8I | GCNNGC | 1 cut(s) | 172 |
| CaiI | CAGNNNCTG | 1 cut(s) | 917 |
| CfoI | GCGC | 1 cut(s) | 176 |
| Cfr13I | GGNCC | 1 cut(s) | 143 |
| CseI | GACGC | 3 cut(s) | 689, 794, 797 |
| CviAII | CATG | 4 cut(s) | 200, 467, 545, 978 |
| DdeI | CTNAG | 4 cut(s) | 6, 337, 777, 837 |
| DinI | GGCGCC | 1 cut(s) | 175 |
| DpnI | GATC | 5 cut(s) | 69, 80, 390, 749, 899 |
| DpnII | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| Eam1104I | CTCTTC | 1 cut(s) | 468 |
| EarI | CTCTTC | 1 cut(s) | 468 |
| Eco130I | CCWWGG | 1 cut(s) | 638 |
| Eco81I | CCTNAGG | 1 cut(s) | 337 |
| EcoT14I | CCWWGG | 1 cut(s) | 638 |
| EcoT22I | ATGCAT | 1 cut(s) | 493 |
| EgeI | GGCGCC | 1 cut(s) | 175 |
| EheI | GGCGCC | 1 cut(s) | 175 |
| ErhI | CCWWGG | 1 cut(s) | 638 |
| FaeI | CATG | 4 cut(s) | 203, 470, 548, 981 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 14, 46 |
| FaqI | GGGAC | 1 cut(s) | 564 |
| FatI | CATG | 4 cut(s) | 199, 466, 544, 977 |
| FauNDI | CATATG | 1 cut(s) | 413 |
| Fnu4HI | GCNGC | 7 cut(s) | 473, 476, 497, 500, 764, 915, 918 |
| FokI | GGATG | 4 cut(s) | 59, 809, 837, 957 |
| Fsp4HI | GCNGC | 7 cut(s) | 473, 476, 497, 500, 764, 915, 918 |
| FspBI | CTAG | 4 cut(s) | 327, 716, 753, 924 |
| GlaI | GCGC | 1 cut(s) | 175 |
| GluI | GCNGC | 7 cut(s) | 473, 476, 497, 500, 764, 915, 918 |
| GsaI | CCCAGC | 1 cut(s) | 805 |
| HaeII | RGCGCY | 1 cut(s) | 177 |
| HaeIII | GGCC | 2 cut(s) | 145, 325 |
| HgaI | GACGC | 3 cut(s) | 689, 794, 797 |
| HhaI | GCGC | 1 cut(s) | 176 |
| Hin1I | GRCGYC | 1 cut(s) | 174 |
| Hin1II | CATG | 4 cut(s) | 203, 470, 548, 981 |
| Hin6I | GCGC | 1 cut(s) | 174 |
| HinP1I | GCGC | 1 cut(s) | 174 |
| HincII | GTYRAC | 1 cut(s) | 17 |
| HindII | GTYRAC | 1 cut(s) | 17 |
| HindIII | AAGCTT | 1 cut(s) | 839 |
| HinfI | GANTC | 3 cut(s) | 311, 551, 830 |
| Hpy166II | GTNNAC | 1 cut(s) | 17 |
| Hpy188I | TCNGA | 4 cut(s) | 72, 108, 348, 396 |
| Hpy188III | TCNNGA | 2 cut(s) | 233, 650 |
| Hpy8I | GTNNAC | 1 cut(s) | 17 |
| Hpy99I | CGWCG | 1 cut(s) | 396 |
| HpyAV | CCTTC | 2 cut(s) | 67, 949 |
| HpyCH4III | ACNGT | 1 cut(s) | 578 |
| HpyCH4V | TGCA | 4 cut(s) | 199, 491, 496, 726 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 359, 797 |
| HpyF3I | CTNAG | 4 cut(s) | 6, 337, 777, 837 |
| Hsp92I | GRCGYC | 1 cut(s) | 174 |
| Hsp92II | CATG | 4 cut(s) | 203, 470, 548, 981 |
| HspAI | GCGC | 1 cut(s) | 174 |
| KasI | GGCGCC | 1 cut(s) | 173 |
| Kzo9I | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| LguI | GCTCTTC | 1 cut(s) | 468 |
| LmnI | GCTCC | 2 cut(s) | 189, 335 |
| LpnPI | CCDG | 7 cut(s) | 156, 246, 252, 306, 324, 815, 941 |
| Lsp1109I | GCAGC | 4 cut(s) | 462, 508, 750, 904 |
| LweI | GCATC | 3 cut(s) | 478, 571, 787 |
| MaeI | CTAG | 4 cut(s) | 327, 716, 753, 924 |
| MaeIII | GTNAC | 1 cut(s) | 380 |
| MalI | GATC | 5 cut(s) | 69, 80, 390, 749, 899 |
| MbiI | CCGCTC | 1 cut(s) | 184 |
| MboI | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| MboII | GAAGA | 6 cut(s) | 221, 248, 311, 455, 557, 605 |
| MfeI | CAATTG | 2 cut(s) | 870, 905 |
| MflI | RGATCY | 1 cut(s) | 897 |
| Mly113I | GGCGCC | 1 cut(s) | 174 |
| MlyI | GAGTC | 2 cut(s) | 560, 839 |
| MmeI | TCCRAC | 2 cut(s) | 86, 374 |
| Mph1103I | ATGCAT | 1 cut(s) | 493 |
| MseI | TTAA | 1 cut(s) | 21 |
| MspA1I | CMGCKG | 2 cut(s) | 499, 917 |
| MspCI | CTTAAG | 1 cut(s) | 20 |
| MunI | CAATTG | 2 cut(s) | 870, 905 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 359, 797 |
| NarI | GGCGCC | 1 cut(s) | 174 |
| NdeI | CATATG | 1 cut(s) | 413 |
| NdeII | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| NlaIII | CATG | 4 cut(s) | 203, 470, 548, 981 |
| NlaIV | GGNNCC | 1 cut(s) | 175 |
| NmeAIII | GCCGAG | 1 cut(s) | 574 |
| NmuCI | GTSAC | 1 cut(s) | 380 |
| NsiI | ATGCAT | 1 cut(s) | 493 |
| NspI | RCATGY | 1 cut(s) | 203 |
| NspV | TTCGAA | 1 cut(s) | 218 |
| PciSI | GCTCTTC | 1 cut(s) | 468 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 311 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 949 |
| PkrI | GCNGC | 7 cut(s) | 474, 477, 498, 501, 765, 916, 919 |
| PleI | GAGTC | 2 cut(s) | 559, 838 |
| PluTI | GGCGCC | 1 cut(s) | 177 |
| PpsI | GAGTC | 2 cut(s) | 559, 838 |
| PspFI | CCCAGC | 1 cut(s) | 801 |
| PspN4I | GGNNCC | 1 cut(s) | 175 |
| PspPI | GGNCC | 1 cut(s) | 143 |
| PstNI | CAGNNNCTG | 1 cut(s) | 917 |
| PsuI | RGATCY | 1 cut(s) | 897 |
| SapI | GCTCTTC | 1 cut(s) | 468 |
| SaqAI | TTAA | 1 cut(s) | 21 |
| SatI | GCNGC | 7 cut(s) | 473, 476, 497, 500, 764, 915, 918 |
| Sau3AI | GATC | 5 cut(s) | 67, 78, 388, 747, 897 |
| Sau96I | GGNCC | 1 cut(s) | 143 |
| SchI | GAGTC | 2 cut(s) | 560, 839 |
| SfaNI | GCATC | 3 cut(s) | 478, 571, 787 |
| SfoI | GGCGCC | 1 cut(s) | 175 |
| SfuI | TTCGAA | 1 cut(s) | 218 |
| SmlI | CTYRAG | 3 cut(s) | 20, 258, 650 |
| SmoI | CTYRAG | 3 cut(s) | 20, 258, 650 |
| SpeI | ACTAGT | 1 cut(s) | 923 |
| SsiI | CCGC | 4 cut(s) | 182, 472, 499, 915 |
| SspDI | GGCGCC | 1 cut(s) | 173 |
| SspMI | CTAG | 4 cut(s) | 327, 716, 753, 924 |
| StyI | CCWWGG | 1 cut(s) | 638 |
| TaaI | ACNGT | 1 cut(s) | 578 |
| TaqI | TCGA | 1 cut(s) | 218 |
| TauI | GCSGC | 3 cut(s) | 475, 502, 917 |
| TfiI | GAWTC | 1 cut(s) | 311 |
| Tru1I | TTAA | 1 cut(s) | 21 |
| Tru9I | TTAA | 1 cut(s) | 21 |
| TscAI | CASTG | 1 cut(s) | 581 |
| TseFI | GTSAC | 1 cut(s) | 380 |
| TseI | GCWGC | 4 cut(s) | 475, 496, 763, 917 |
| Tsp45I | GTSAC | 1 cut(s) | 380 |
| TspDTI | ATGAA | 1 cut(s) | 455 |
| TspGWI | ACGGA | 1 cut(s) | 924 |
| TspRI | CASTG | 1 cut(s) | 581 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 949 |
| Vha464I | CTTAAG | 1 cut(s) | 20 |
| XapI | RAATTY | 1 cut(s) | 111 |
| XceI | RCATGY | 1 cut(s) | 203 |
| XspI | CTAG | 4 cut(s) | 327, 716, 753, 924 |
| Zsp2I | ATGCAT | 1 cut(s) | 493 |