ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 811 |
| AciI | CCGC | 3 cut(s) | 811, 822, 939 |
| AcsI | RAATTY | 3 cut(s) | 401, 672, 844 |
| AcuI | CTGAAG | 1 cut(s) | 150 |
| AfaI | GTAC | 2 cut(s) | 135, 706 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 235, 249 |
| AgsI | TTSAA | 7 cut(s) | 191, 257, 412, 488, 529, 1041, 1101 |
| AjnI | CCWGG | 1 cut(s) | 176 |
| AluBI | AGCT | 7 cut(s) | 76, 149, 395, 620, 851, 900, 1002 |
| AluI | AGCT | 7 cut(s) | 76, 149, 395, 620, 851, 900, 1002 |
| Alw21I | GWGCWC | 1 cut(s) | 397 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| AoxI | GGCC | 3 cut(s) | 317, 543, 922 |
| ApeKI | GCWGC | 2 cut(s) | 76, 999 |
| ApoI | RAATTY | 3 cut(s) | 401, 672, 844 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 637 |
| AspA2I | CCTAGG | 1 cut(s) | 919 |
| AspS9I | GGNCC | 3 cut(s) | 509, 712, 923 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 670, 953 |
| AvaII | GGWCC | 2 cut(s) | 509, 712 |
| AvrII | CCTAGG | 1 cut(s) | 919 |
| BaeGI | GKGCMC | 1 cut(s) | 919 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 696, 729 |
| BanII | GRGCYC | 2 cut(s) | 274, 397 |
| BauI | CACGAG | 1 cut(s) | 207 |
| BbsI | GAAGAC | 1 cut(s) | 1089 |
| Bbv12I | GWGCWC | 1 cut(s) | 397 |
| BbvCI | CCTCAGC | 1 cut(s) | 621 |
| BbvI | GCAGC | 2 cut(s) | 63, 1011 |
| BccI | CCATC | 4 cut(s) | 243, 695, 899, 923 |
| BciT130I | CCWGG | 1 cut(s) | 178 |
| BclI | TGATCA | 1 cut(s) | 220 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BfaI | CTAG | 3 cut(s) | 213, 774, 920 |
| BfmI | CTRYAG | 1 cut(s) | 244 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 930 |
| BglII | AGATCT | 1 cut(s) | 472 |
| BisI | GCNGC | 2 cut(s) | 77, 1000 |
| BlnI | CCTAGG | 1 cut(s) | 919 |
| BlsI | GCNGC | 2 cut(s) | 78, 1001 |
| Bme1390I | CCNGG | 1 cut(s) | 178 |
| Bme18I | GGWCC | 2 cut(s) | 509, 712 |
| BmgT120I | GGNCC | 3 cut(s) | 509, 712, 923 |
| BmiI | GGNNCC | 2 cut(s) | 273, 510 |
| BmrFI | CCNGG | 1 cut(s) | 178 |
| BmsI | GCATC | 2 cut(s) | 163, 698 |
| BoxI | GACNNNNGTC | 1 cut(s) | 798 |
| BpiI | GAAGAC | 1 cut(s) | 1089 |
| Bpu10I | CCTNAGC | 1 cut(s) | 621 |
| BsaBI | GATNNNNATC | 1 cut(s) | 783 |
| BsaJI | CCNNGG | 2 cut(s) | 883, 919 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 235, 249 |
| Bse1I | ACTGG | 1 cut(s) | 802 |
| Bse8I | GATNNNNATC | 1 cut(s) | 783 |
| BseBI | CCWGG | 1 cut(s) | 178 |
| BseDI | CCNNGG | 2 cut(s) | 883, 919 |
| BseGI | GGATG | 3 cut(s) | 365, 544, 910 |
| BseJI | GATNNNNATC | 1 cut(s) | 783 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 235, 249 |
| BseMII | CTCAG | 1 cut(s) | 612 |
| BseNI | ACTGG | 1 cut(s) | 802 |
| BseRI | GAGGAG | 1 cut(s) | 851 |
| BseSI | GKGCMC | 1 cut(s) | 919 |
| BseXI | GCAGC | 2 cut(s) | 63, 1011 |
| BseYI | CCCAGC | 1 cut(s) | 505 |
| BsgI | GTGCAG | 2 cut(s) | 82, 909 |
| BshFI | GGCC | 3 cut(s) | 319, 545, 924 |
| BsiHKAI | GWGCWC | 1 cut(s) | 397 |
| BslFI | GGGAC | 2 cut(s) | 522, 595 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 235, 249 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsmFI | GGGAC | 2 cut(s) | 522, 595 |
| BsnI | GGCC | 3 cut(s) | 319, 545, 924 |
| Bsp1286I | GDGCHC | 3 cut(s) | 274, 397, 919 |
| Bsp143I | GATC | 3 cut(s) | 220, 472, 784 |
| BspACI | CCGC | 3 cut(s) | 811, 822, 939 |
| BspANI | GGCC | 3 cut(s) | 319, 545, 924 |
| BspCNI | CTCAG | 1 cut(s) | 613 |
| BspHI | TCATGA | 1 cut(s) | 894 |
| BspLI | GGNNCC | 2 cut(s) | 273, 510 |
| BsrBI | CCGCTC | 1 cut(s) | 811 |
| BsrI | ACTGG | 1 cut(s) | 802 |
| BssECI | CCNNGG | 2 cut(s) | 883, 919 |
| BssMI | GATC | 3 cut(s) | 220, 472, 784 |
| BssSI | CACGAG | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 1 cut(s) | 919 |
| Bst2BI | CACGAG | 1 cut(s) | 207 |
| Bst2UI | CCWGG | 1 cut(s) | 178 |
| Bst4CI | ACNGT | 2 cut(s) | 33, 261 |
| Bst6I | CTCTTC | 1 cut(s) | 1065 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 60 |
| BstDEI | CTNAG | 3 cut(s) | 590, 621, 695 |
| BstEII | GGTNACC | 1 cut(s) | 238 |
| BstF5I | GGATG | 3 cut(s) | 365, 544, 910 |
| BstKTI | GATC | 3 cut(s) | 223, 475, 787 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMBI | GATC | 3 cut(s) | 220, 472, 784 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 60, 325, 551, 930 |
| BstNI | CCWGG | 1 cut(s) | 178 |
| BstNSI | RCATGY | 2 cut(s) | 295, 746 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 798 |
| BstPI | GGTNACC | 1 cut(s) | 238 |
| BstSCI | CCNGG | 1 cut(s) | 176 |
| BstSFI | CTRYAG | 1 cut(s) | 244 |
| BstSLI | GKGCMC | 1 cut(s) | 919 |
| BstV1I | GCAGC | 2 cut(s) | 63, 1011 |
| BstV2I | GAAGAC | 1 cut(s) | 1089 |
| BstX2I | RGATCY | 1 cut(s) | 472 |
| BstYI | RGATCY | 1 cut(s) | 472 |
| BsuRI | GGCC | 3 cut(s) | 319, 545, 924 |
| BtsCI | GGATG | 3 cut(s) | 365, 544, 910 |
| BtsI | GCAGTG | 1 cut(s) | 70 |
| BtsIMutI | CAGTG | 3 cut(s) | 70, 579, 795 |
| CciI | TCATGA | 1 cut(s) | 894 |
| Cfr13I | GGNCC | 3 cut(s) | 509, 712, 923 |
| Csp6I | GTAC | 2 cut(s) | 134, 705 |
| CviAII | CATG | 6 cut(s) | 111, 292, 329, 655, 743, 895 |
| CviQI | GTAC | 2 cut(s) | 134, 705 |
| DdeI | CTNAG | 3 cut(s) | 590, 621, 695 |
| DpnI | GATC | 3 cut(s) | 222, 474, 786 |
| DpnII | GATC | 3 cut(s) | 220, 472, 784 |
| Eam1104I | CTCTTC | 1 cut(s) | 1065 |
| EarI | CTCTTC | 1 cut(s) | 1065 |
| Ecl136II | GAGCTC | 1 cut(s) | 395 |
| Eco130I | CCWWGG | 1 cut(s) | 919 |
| Eco147I | AGGCCT | 1 cut(s) | 319 |
| Eco24I | GRGCYC | 2 cut(s) | 274, 397 |
| Eco47I | GGWCC | 2 cut(s) | 509, 712 |
| Eco53kI | GAGCTC | 1 cut(s) | 395 |
| Eco57I | CTGAAG | 1 cut(s) | 150 |
| Eco91I | GGTNACC | 1 cut(s) | 238 |
| EcoICRI | GAGCTC | 1 cut(s) | 395 |
| EcoO109I | RGGNCCY | 2 cut(s) | 509, 712 |
| EcoO65I | GGTNACC | 1 cut(s) | 238 |
| EcoRI | GAATTC | 1 cut(s) | 672 |
| EcoRII | CCWGG | 1 cut(s) | 176 |
| EcoT14I | CCWWGG | 1 cut(s) | 919 |
| EcoT38I | GRGCYC | 2 cut(s) | 274, 397 |
| ErhI | CCWWGG | 1 cut(s) | 919 |
| FaeI | CATG | 6 cut(s) | 114, 295, 332, 658, 746, 898 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 459, 491 |
| FaqI | GGGAC | 2 cut(s) | 522, 595 |
| FatI | CATG | 6 cut(s) | 110, 291, 328, 654, 742, 894 |
| FauI | CCCGC | 2 cut(s) | 804, 829 |
| FbaI | TGATCA | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 2 cut(s) | 77, 1000 |
| FokI | GGATG | 3 cut(s) | 372, 551, 917 |
| FriOI | GRGCYC | 2 cut(s) | 274, 397 |
| Fsp4HI | GCNGC | 2 cut(s) | 77, 1000 |
| FspBI | CTAG | 3 cut(s) | 213, 774, 920 |
| GluI | GCNGC | 2 cut(s) | 77, 1000 |
| GsaI | CCCAGC | 1 cut(s) | 509 |
| HaeIII | GGCC | 3 cut(s) | 319, 545, 924 |
| Hin1II | CATG | 6 cut(s) | 114, 295, 332, 658, 746, 898 |
| HinfI | GANTC | 2 cut(s) | 253, 282 |
| HphI | GGTGA | 3 cut(s) | 232, 670, 953 |
| Hpy166II | GTNNAC | 3 cut(s) | 445, 707, 771 |
| Hpy188I | TCNGA | 4 cut(s) | 220, 281, 884, 1090 |
| Hpy188III | TCNNGA | 3 cut(s) | 286, 476, 895 |
| Hpy8I | GTNNAC | 3 cut(s) | 445, 707, 771 |
| HpyCH4III | ACNGT | 2 cut(s) | 33, 261 |
| HpyCH4V | TGCA | 6 cut(s) | 63, 328, 577, 649, 890, 999 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 60, 325, 551, 930 |
| HpyF3I | CTNAG | 3 cut(s) | 590, 621, 695 |
| Hsp92II | CATG | 6 cut(s) | 114, 295, 332, 658, 746, 898 |
| Ksp22I | TGATCA | 1 cut(s) | 220 |
| Kzo9I | GATC | 3 cut(s) | 220, 472, 784 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| Lsp1109I | GCAGC | 2 cut(s) | 63, 1011 |
| LweI | GCATC | 2 cut(s) | 163, 698 |
| MaeI | CTAG | 3 cut(s) | 213, 774, 920 |
| MaeIII | GTNAC | 3 cut(s) | 238, 677, 829 |
| MalI | GATC | 3 cut(s) | 222, 474, 786 |
| MbiI | CCGCTC | 1 cut(s) | 811 |
| MboI | GATC | 3 cut(s) | 220, 472, 784 |
| MboII | GAAGA | 3 cut(s) | 1016, 1082, 1089 |
| MflI | RGATCY | 1 cut(s) | 472 |
| MhlI | GDGCHC | 3 cut(s) | 274, 397, 919 |
| MluCI | AATT | 8 cut(s) | 401, 495, 599, 672, 844, 1015, 1030, 1036 |
| MroXI | GAANNNNTTC | 1 cut(s) | 637 |
| MseI | TTAA | 5 cut(s) | 81, 458, 602, 717, 1035 |
| MspR9I | CCNGG | 1 cut(s) | 178 |
| MvaI | CCWGG | 1 cut(s) | 178 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 60, 325, 551, 930 |
| NdeII | GATC | 3 cut(s) | 220, 472, 784 |
| NlaIII | CATG | 6 cut(s) | 114, 295, 332, 658, 746, 898 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 510 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NmuCI | GTSAC | 2 cut(s) | 238, 829 |
| NspI | RCATGY | 2 cut(s) | 295, 746 |
| PagI | TCATGA | 1 cut(s) | 894 |
| PceI | AGGCCT | 1 cut(s) | 319 |
| PdmI | GAANNNNTTC | 1 cut(s) | 637 |
| PfeI | GAWTC | 2 cut(s) | 253, 282 |
| PkrI | GCNGC | 2 cut(s) | 78, 1001 |
| PpuMI | RGGWCCY | 2 cut(s) | 509, 712 |
| PshAI | GACNNNNGTC | 1 cut(s) | 798 |
| Psp124BI | GAGCTC | 1 cut(s) | 397 |
| Psp5II | RGGWCCY | 2 cut(s) | 509, 712 |
| Psp6I | CCWGG | 1 cut(s) | 176 |
| PspEI | GGTNACC | 1 cut(s) | 238 |
| PspFI | CCCAGC | 1 cut(s) | 505 |
| PspGI | CCWGG | 1 cut(s) | 176 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 510 |
| PspPI | GGNCC | 3 cut(s) | 509, 712, 923 |
| PspPPI | RGGWCCY | 2 cut(s) | 509, 712 |
| PsuI | RGATCY | 1 cut(s) | 472 |
| RsaI | GTAC | 2 cut(s) | 135, 706 |
| RsaNI | GTAC | 2 cut(s) | 134, 705 |
| SacI | GAGCTC | 1 cut(s) | 397 |
| SaqAI | TTAA | 5 cut(s) | 81, 458, 602, 717, 1035 |
| SatI | GCNGC | 2 cut(s) | 77, 1000 |
| Sau3AI | GATC | 3 cut(s) | 220, 472, 784 |
| Sau96I | GGNCC | 3 cut(s) | 509, 712, 923 |
| ScrFI | CCNGG | 1 cut(s) | 178 |
| SduI | GDGCHC | 3 cut(s) | 274, 397, 919 |
| SfaNI | GCATC | 2 cut(s) | 163, 698 |
| SfcI | CTRYAG | 1 cut(s) | 244 |
| SinI | GGWCC | 2 cut(s) | 509, 712 |
| Sse9I | AATT | 8 cut(s) | 401, 495, 599, 672, 844, 1015, 1030, 1036 |
| SseBI | AGGCCT | 1 cut(s) | 319 |
| SsiI | CCGC | 3 cut(s) | 811, 822, 939 |
| SspI | AATATT | 1 cut(s) | 21 |
| SspMI | CTAG | 3 cut(s) | 213, 774, 920 |
| SstI | GAGCTC | 1 cut(s) | 397 |
| StuI | AGGCCT | 1 cut(s) | 319 |
| StyD4I | CCNGG | 1 cut(s) | 176 |
| StyI | CCWWGG | 1 cut(s) | 919 |
| TaaI | ACNGT | 2 cut(s) | 33, 261 |
| TasI | AATT | 8 cut(s) | 401, 495, 599, 672, 844, 1015, 1030, 1036 |
| TfiI | GAWTC | 2 cut(s) | 253, 282 |
| Tru1I | TTAA | 5 cut(s) | 81, 458, 602, 717, 1035 |
| Tru9I | TTAA | 5 cut(s) | 81, 458, 602, 717, 1035 |
| TscAI | CASTG | 3 cut(s) | 70, 579, 802 |
| TseFI | GTSAC | 2 cut(s) | 238, 829 |
| TseI | GCWGC | 2 cut(s) | 76, 999 |
| Tsp45I | GTSAC | 2 cut(s) | 238, 829 |
| TspDTI | ATGAA | 2 cut(s) | 17, 369 |
| TspGWI | ACGGA | 1 cut(s) | 887 |
| TspRI | CASTG | 3 cut(s) | 70, 579, 802 |
| VpaK11BI | GGWCC | 2 cut(s) | 509, 712 |
| XapI | RAATTY | 3 cut(s) | 401, 672, 844 |
| XceI | RCATGY | 2 cut(s) | 295, 746 |
| XmaJI | CCTAGG | 1 cut(s) | 919 |
| XmnI | GAANNNNTTC | 1 cut(s) | 637 |
| XspI | CTAG | 3 cut(s) | 213, 774, 920 |