Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 369 |
| AccB1I | GGYRCC | 1 cut(s) | 426 |
| AciI | CCGC | 2 cut(s) | 207, 418 |
| AclWI | GGATC | 2 cut(s) | 126, 384 |
| AcyI | GRCGYC | 2 cut(s) | 366, 427 |
| AfaI | GTAC | 1 cut(s) | 175 |
| AfeI | AGCGCT | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 191, 241 |
| AgsI | TTSAA | 1 cut(s) | 106 |
| Alw21I | GWGCWC | 1 cut(s) | 169 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| Alw44I | GTGCAC | 1 cut(s) | 165 |
| AlwI | GGATC | 2 cut(s) | 126, 384 |
| Aor51HI | AGCGCT | 1 cut(s) | 326 |
| AoxI | GGCC | 1 cut(s) | 346 |
| ApaLI | GTGCAC | 1 cut(s) | 165 |
| ApeKI | GCWGC | 2 cut(s) | 209, 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| AspLEI | GCGC | 3 cut(s) | 327, 417, 429 |
| AsuHPI | GGTGA | 1 cut(s) | 303 |
| BaeGI | GKGCMC | 2 cut(s) | 27, 169 |
| BanI | GGYRCC | 1 cut(s) | 426 |
| Bbv12I | GWGCWC | 1 cut(s) | 169 |
| BbvI | GCAGC | 2 cut(s) | 196, 424 |
| BccI | CCATC | 1 cut(s) | 216 |
| BceAI | ACGGC | 1 cut(s) | 405 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BfaI | CTAG | 1 cut(s) | 78 |
| BfoI | RGCGCY | 3 cut(s) | 328, 418, 430 |
| BisI | GCNGC | 4 cut(s) | 207, 210, 413, 418 |
| BlsI | GCNGC | 4 cut(s) | 208, 211, 414, 419 |
| BmiI | GGNNCC | 1 cut(s) | 428 |
| BmsI | GCATC | 3 cut(s) | 204, 375, 423 |
| BpuEI | CTTGAG | 1 cut(s) | 43 |
| BsaBI | GATNNNNATC | 1 cut(s) | 336 |
| BsaHI | GRCGYC | 2 cut(s) | 366, 427 |
| BsaI | GGTCTC | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 2 cut(s) | 90, 390 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 191, 241 |
| Bse1I | ACTGG | 1 cut(s) | 386 |
| Bse8I | GATNNNNATC | 1 cut(s) | 336 |
| BseDI | CCNNGG | 2 cut(s) | 90, 390 |
| BseGI | GGATG | 3 cut(s) | 57, 227, 390 |
| BseJI | GATNNNNATC | 1 cut(s) | 336 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 191, 241 |
| BseNI | ACTGG | 1 cut(s) | 386 |
| BseSI | GKGCMC | 2 cut(s) | 27, 169 |
| BseXI | GCAGC | 2 cut(s) | 196, 424 |
| BshFI | GGCC | 1 cut(s) | 348 |
| BshNI | GGYRCC | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 169 |
| BsiSI | CCGG | 1 cut(s) | 403 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 191, 241 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsnI | GGCC | 1 cut(s) | 348 |
| Bso31I | GGTCTC | 1 cut(s) | 220 |
| Bsp1286I | GDGCHC | 2 cut(s) | 27, 169 |
| Bsp143I | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| BspACI | CCGC | 2 cut(s) | 207, 418 |
| BspANI | GGCC | 1 cut(s) | 348 |
| BspLI | GGNNCC | 1 cut(s) | 428 |
| BspPI | GGATC | 2 cut(s) | 126, 384 |
| BspT107I | GGYRCC | 1 cut(s) | 426 |
| BspTNI | GGTCTC | 1 cut(s) | 220 |
| BsrI | ACTGG | 1 cut(s) | 386 |
| BssECI | CCNNGG | 2 cut(s) | 90, 390 |
| BssMI | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| BssNI | GRCGYC | 2 cut(s) | 366, 427 |
| BssT1I | CCWWGG | 1 cut(s) | 390 |
| Bst4CI | ACNGT | 1 cut(s) | 286 |
| BstACI | GRCGYC | 2 cut(s) | 366, 427 |
| BstC8I | GCNNGC | 1 cut(s) | 39 |
| BstDSI | CCRYGG | 1 cut(s) | 90 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 189 |
| BstF5I | GGATG | 3 cut(s) | 57, 227, 390 |
| BstH2I | RGCGCY | 3 cut(s) | 328, 418, 430 |
| BstHHI | GCGC | 3 cut(s) | 327, 417, 429 |
| BstKTI | GATC | 6 cut(s) | 57, 121, 241, 334, 340, 379 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 215, 412, 426, 433 |
| BstNSI | RCATGY | 2 cut(s) | 41, 103 |
| BstSLI | GKGCMC | 2 cut(s) | 27, 169 |
| BstV1I | GCAGC | 2 cut(s) | 196, 424 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 348 |
| BtgI | CCRYGG | 1 cut(s) | 90 |
| BtsCI | GGATG | 3 cut(s) | 57, 227, 390 |
| BtsIMutI | CAGTG | 1 cut(s) | 379 |
| Cac8I | GCNNGC | 1 cut(s) | 39 |
| CfoI | GCGC | 3 cut(s) | 327, 417, 429 |
| Csp6I | GTAC | 1 cut(s) | 174 |
| CviAII | CATG | 3 cut(s) | 38, 100, 359 |
| CviJI | RGCY | 4 cut(s) | 81, 89, 184, 348 |
| CviKI_1 | RGCY | 4 cut(s) | 81, 89, 184, 348 |
| CviQI | GTAC | 1 cut(s) | 174 |
| DinI | GGCGCC | 1 cut(s) | 428 |
| DpnI | GATC | 6 cut(s) | 56, 120, 240, 333, 339, 378 |
| DpnII | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| Eco130I | CCWWGG | 1 cut(s) | 390 |
| Eco31I | GGTCTC | 1 cut(s) | 220 |
| Eco47III | AGCGCT | 1 cut(s) | 326 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 189 |
| EcoT14I | CCWWGG | 1 cut(s) | 390 |
| EcoT22I | ATGCAT | 2 cut(s) | 39, 438 |
| EgeI | GGCGCC | 1 cut(s) | 428 |
| EheI | GGCGCC | 1 cut(s) | 428 |
| ErhI | CCWWGG | 1 cut(s) | 390 |
| FaeI | CATG | 3 cut(s) | 41, 103, 362 |
| FaiI | YATR | 8 cut(s) | 35, 39, 66, 86, 101, 128, 179, 360 |
| FatI | CATG | 3 cut(s) | 37, 99, 358 |
| Fnu4HI | GCNGC | 4 cut(s) | 207, 210, 413, 418 |
| FokI | GGATG | 3 cut(s) | 64, 234, 397 |
| Fsp4HI | GCNGC | 4 cut(s) | 207, 210, 413, 418 |
| FspBI | CTAG | 1 cut(s) | 78 |
| GlaI | GCGC | 3 cut(s) | 326, 416, 428 |
| GluI | GCNGC | 4 cut(s) | 207, 210, 413, 418 |
| HaeII | RGCGCY | 3 cut(s) | 328, 418, 430 |
| HaeIII | GGCC | 1 cut(s) | 348 |
| HapII | CCGG | 1 cut(s) | 403 |
| HhaI | GCGC | 3 cut(s) | 327, 417, 429 |
| Hin1I | GRCGYC | 2 cut(s) | 366, 427 |
| Hin1II | CATG | 3 cut(s) | 41, 103, 362 |
| Hin6I | GCGC | 3 cut(s) | 325, 415, 427 |
| HinP1I | GCGC | 3 cut(s) | 325, 415, 427 |
| HinfI | GANTC | 2 cut(s) | 145, 395 |
| HpaII | CCGG | 1 cut(s) | 403 |
| HphI | GGTGA | 1 cut(s) | 303 |
| Hpy166II | GTNNAC | 4 cut(s) | 155, 167, 263, 282 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 142, 335 |
| Hpy8I | GTNNAC | 4 cut(s) | 155, 167, 263, 282 |
| Hpy99I | CGWCG | 3 cut(s) | 278, 371, 426 |
| HpyAV | CCTTC | 1 cut(s) | 359 |
| HpyCH4III | ACNGT | 1 cut(s) | 286 |
| HpyCH4IV | ACGT | 1 cut(s) | 366 |
| HpyCH4V | TGCA | 5 cut(s) | 6, 37, 99, 167, 436 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 215, 412, 426, 433 |
| HpySE526I | ACGT | 1 cut(s) | 366 |
| Hsp92I | GRCGYC | 2 cut(s) | 366, 427 |
| Hsp92II | CATG | 3 cut(s) | 41, 103, 362 |
| HspAI | GCGC | 3 cut(s) | 325, 415, 427 |
| KasI | GGCGCC | 1 cut(s) | 426 |
| Kzo9I | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| Lsp1109I | GCAGC | 2 cut(s) | 196, 424 |
| LweI | GCATC | 3 cut(s) | 204, 375, 423 |
| MaeI | CTAG | 1 cut(s) | 78 |
| MaeII | ACGT | 1 cut(s) | 366 |
| MalI | GATC | 6 cut(s) | 56, 120, 240, 333, 339, 378 |
| MboI | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| MboII | GAAGA | 3 cut(s) | 145, 242, 347 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MhlI | GDGCHC | 2 cut(s) | 27, 169 |
| MluCI | AATT | 1 cut(s) | 106 |
| Mly113I | GGCGCC | 1 cut(s) | 427 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MnlI | CCTC | 3 cut(s) | 7, 168, 245 |
| Mph1103I | ATGCAT | 2 cut(s) | 39, 438 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MseI | TTAA | 1 cut(s) | 293 |
| MslI | CAYNNNNRTG | 1 cut(s) | 357 |
| MspA1I | CMGCKG | 1 cut(s) | 209 |
| MspI | CCGG | 1 cut(s) | 403 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 215, 412, 426, 433 |
| NarI | GGCGCC | 1 cut(s) | 427 |
| NdeII | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| NlaIII | CATG | 3 cut(s) | 41, 103, 362 |
| NlaIV | GGNNCC | 1 cut(s) | 428 |
| NsiI | ATGCAT | 2 cut(s) | 39, 438 |
| NspI | RCATGY | 2 cut(s) | 41, 103 |
| PaeI | GCATGC | 1 cut(s) | 41 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 1 cut(s) | 145 |
| PflFI | GACNNNGTC | 2 cut(s) | 368, 398 |
| PkrI | GCNGC | 4 cut(s) | 208, 211, 414, 419 |
| PleI | GAGTC | 1 cut(s) | 389 |
| PluTI | GGCGCC | 1 cut(s) | 430 |
| PpsI | GAGTC | 1 cut(s) | 389 |
| PspN4I | GGNNCC | 1 cut(s) | 428 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| PsyI | GACNNNGTC | 2 cut(s) | 368, 398 |
| RsaI | GTAC | 1 cut(s) | 175 |
| RsaNI | GTAC | 1 cut(s) | 174 |
| RseI | CAYNNNNRTG | 1 cut(s) | 357 |
| SaqAI | TTAA | 1 cut(s) | 293 |
| SatI | GCNGC | 4 cut(s) | 207, 210, 413, 418 |
| Sau3AI | GATC | 6 cut(s) | 54, 118, 238, 331, 337, 376 |
| SchI | GAGTC | 1 cut(s) | 389 |
| SduI | GDGCHC | 2 cut(s) | 27, 169 |
| SetI | ASST | 5 cut(s) | 12, 160, 172, 237, 369 |
| SfaNI | GCATC | 3 cut(s) | 204, 375, 423 |
| SfoI | GGCGCC | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 357 |
| SmlI | CTYRAG | 1 cut(s) | 58 |
| SmoI | CTYRAG | 1 cut(s) | 58 |
| SphI | GCATGC | 1 cut(s) | 41 |
| Sse9I | AATT | 1 cut(s) | 106 |
| SsiI | CCGC | 2 cut(s) | 207, 418 |
| SspDI | GGCGCC | 1 cut(s) | 426 |
| SspMI | CTAG | 1 cut(s) | 78 |
| StyI | CCWWGG | 1 cut(s) | 390 |
| TaaI | ACNGT | 1 cut(s) | 286 |
| TaiI | ACGT | 1 cut(s) | 369 |
| TaqI | TCGA | 3 cut(s) | 237, 330, 336 |
| TasI | AATT | 1 cut(s) | 106 |
| TauI | GCSGC | 2 cut(s) | 209, 420 |
| TfiI | GAWTC | 1 cut(s) | 145 |
| Tru1I | TTAA | 1 cut(s) | 293 |
| Tru9I | TTAA | 1 cut(s) | 293 |
| TscAI | CASTG | 1 cut(s) | 386 |
| TseI | GCWGC | 2 cut(s) | 209, 412 |
| TspDTI | ATGAA | 2 cut(s) | 341, 347 |
| TspGWI | ACGGA | 1 cut(s) | 388 |
| TspRI | CASTG | 1 cut(s) | 386 |
| Tth111I | GACNNNGTC | 2 cut(s) | 368, 398 |
| VneI | GTGCAC | 1 cut(s) | 165 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 189 |
| XceI | RCATGY | 2 cut(s) | 41, 103 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |
| XspI | CTAG | 1 cut(s) | 78 |
| ZraI | GACGTC | 1 cut(s) | 367 |
| Zsp2I | ATGCAT | 2 cut(s) | 39, 438 |