ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 263, 751 |
| Acc65I | GGTACC | 1 cut(s) | 169 |
| AccB1I | GGYRCC | 1 cut(s) | 169 |
| AciI | CCGC | 1 cut(s) | 420 |
| AclI | AACGTT | 1 cut(s) | 370 |
| AclWI | GGATC | 4 cut(s) | 395, 408, 556, 762 |
| AcoI | YGGCCR | 2 cut(s) | 159, 341 |
| AcsI | RAATTY | 2 cut(s) | 330, 748 |
| AcuI | CTGAAG | 1 cut(s) | 266 |
| AfaI | GTAC | 4 cut(s) | 171, 203, 310, 366 |
| AfeI | AGCGCT | 1 cut(s) | 518 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 77 |
| AflII | CTTAAG | 1 cut(s) | 512 |
| AflIII | ACRYGT | 1 cut(s) | 440 |
| AgsI | TTSAA | 7 cut(s) | 62, 305, 329, 478, 593, 739, 803 |
| AluBI | AGCT | 7 cut(s) | 156, 262, 286, 294, 352, 694, 733 |
| AluI | AGCT | 7 cut(s) | 156, 262, 286, 294, 352, 694, 733 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| AlwI | GGATC | 4 cut(s) | 395, 408, 556, 762 |
| Ama87I | CYCGRG | 1 cut(s) | 143 |
| Aor51HI | AGCGCT | 1 cut(s) | 518 |
| AoxI | GGCC | 4 cut(s) | 159, 341, 631, 647 |
| ApeKI | GCWGC | 2 cut(s) | 259, 519 |
| ApoI | RAATTY | 2 cut(s) | 330, 748 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 485 |
| Asp718I | GGTACC | 1 cut(s) | 169 |
| AspLEI | GCGC | 2 cut(s) | 70, 519 |
| AspS9I | GGNCC | 1 cut(s) | 697 |
| AsuC2I | CCSGG | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 758 |
| AvaI | CYCGRG | 1 cut(s) | 143 |
| AvaII | GGWCC | 1 cut(s) | 697 |
| BalI | TGGCCA | 1 cut(s) | 343 |
| BamHI | GGATCC | 1 cut(s) | 400 |
| BanI | GGYRCC | 1 cut(s) | 169 |
| BbsI | GAAGAC | 2 cut(s) | 193, 609 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BbvI | GCAGC | 2 cut(s) | 271, 506 |
| BccI | CCATC | 2 cut(s) | 556, 711 |
| BcnI | CCSGG | 1 cut(s) | 110 |
| BfoI | RGCGCY | 1 cut(s) | 520 |
| BfrI | CTTAAG | 1 cut(s) | 512 |
| BfuAI | ACCTGC | 2 cut(s) | 263, 751 |
| BglII | AGATCT | 1 cut(s) | 147 |
| BisI | GCNGC | 2 cut(s) | 260, 520 |
| BlsI | GCNGC | 2 cut(s) | 261, 521 |
| BmcAI | AGTACT | 1 cut(s) | 203 |
| Bme1390I | CCNGG | 1 cut(s) | 110 |
| Bme18I | GGWCC | 1 cut(s) | 697 |
| BmeT110I | CYCGRG | 1 cut(s) | 143 |
| BmgT120I | GGNCC | 1 cut(s) | 697 |
| BmiI | GGNNCC | 3 cut(s) | 171, 402, 418 |
| BmrFI | CCNGG | 1 cut(s) | 110 |
| BmsI | GCATC | 2 cut(s) | 55, 221 |
| BpiI | GAAGAC | 2 cut(s) | 193, 609 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 801 |
| BpmI | CTGGAG | 3 cut(s) | 60, 116, 172 |
| Bpu10I | CCTNAGC | 1 cut(s) | 469 |
| BpuEI | CTTGAG | 1 cut(s) | 620 |
| BpuMI | CCSGG | 1 cut(s) | 110 |
| BsaJI | CCNNGG | 1 cut(s) | 344 |
| BsaWI | WCCGGW | 1 cut(s) | 699 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 341, 371 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 77 |
| Bse3DI | GCAATG | 1 cut(s) | 213 |
| BseDI | CCNNGG | 1 cut(s) | 344 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 77 |
| BseMI | GCAATG | 1 cut(s) | 213 |
| BseMII | CTCAG | 2 cut(s) | 41, 525 |
| BseXI | GCAGC | 2 cut(s) | 271, 506 |
| BseYI | CCCAGC | 1 cut(s) | 522 |
| BsgI | GTGCAG | 1 cut(s) | 689 |
| BshFI | GGCC | 4 cut(s) | 161, 343, 633, 649 |
| BshNI | GGYRCC | 1 cut(s) | 169 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BsiHKCI | CYCGRG | 1 cut(s) | 143 |
| BsiSI | CCGG | 2 cut(s) | 110, 700 |
| BslFI | GGGAC | 1 cut(s) | 698 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 77 |
| BsmFI | GGGAC | 1 cut(s) | 698 |
| BsnI | GGCC | 4 cut(s) | 161, 343, 633, 649 |
| BsoBI | CYCGRG | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| Bsp143I | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| BspACI | CCGC | 1 cut(s) | 420 |
| BspANI | GGCC | 4 cut(s) | 161, 343, 633, 649 |
| BspCNI | CTCAG | 2 cut(s) | 42, 526 |
| BspLI | GGNNCC | 3 cut(s) | 171, 402, 418 |
| BspMI | ACCTGC | 2 cut(s) | 263, 751 |
| BspPI | GGATC | 4 cut(s) | 395, 408, 556, 762 |
| BspT107I | GGYRCC | 1 cut(s) | 169 |
| BspTI | CTTAAG | 1 cut(s) | 512 |
| BsrDI | GCAATG | 1 cut(s) | 213 |
| BssECI | CCNNGG | 1 cut(s) | 344 |
| BssMI | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| BssT1I | CCWWGG | 1 cut(s) | 344 |
| Bst4CI | ACNGT | 3 cut(s) | 80, 133, 689 |
| BstAFI | CTTAAG | 1 cut(s) | 512 |
| BstC8I | GCNNGC | 1 cut(s) | 449 |
| BstDEI | CTNAG | 4 cut(s) | 50, 469, 534, 825 |
| BstH2I | RGCGCY | 1 cut(s) | 520 |
| BstHHI | GCGC | 2 cut(s) | 70, 519 |
| BstKTI | GATC | 6 cut(s) | 117, 150, 228, 403, 564, 757 |
| BstMBI | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 349, 428 |
| BstNSI | RCATGY | 2 cut(s) | 444, 451 |
| BstSCI | CCNGG | 1 cut(s) | 108 |
| BstV1I | GCAGC | 2 cut(s) | 271, 506 |
| BstV2I | GAAGAC | 2 cut(s) | 193, 609 |
| BstX2I | RGATCY | 2 cut(s) | 147, 400 |
| BstYI | RGATCY | 2 cut(s) | 147, 400 |
| BsuRI | GGCC | 4 cut(s) | 161, 343, 633, 649 |
| BtsI | GCAGTG | 1 cut(s) | 677 |
| BtsIMutI | CAGTG | 1 cut(s) | 677 |
| BveI | ACCTGC | 2 cut(s) | 263, 751 |
| Cac8I | GCNNGC | 1 cut(s) | 449 |
| CfoI | GCGC | 2 cut(s) | 70, 519 |
| Cfr13I | GGNCC | 1 cut(s) | 697 |
| Csp6I | GTAC | 4 cut(s) | 170, 202, 309, 365 |
| CviAII | CATG | 6 cut(s) | 29, 246, 441, 448, 461, 566 |
| CviQI | GTAC | 4 cut(s) | 170, 202, 309, 365 |
| DdeI | CTNAG | 4 cut(s) | 50, 469, 534, 825 |
| DpnI | GATC | 6 cut(s) | 116, 149, 227, 402, 563, 756 |
| DpnII | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| EaeI | YGGCCR | 2 cut(s) | 159, 341 |
| Eco130I | CCWWGG | 1 cut(s) | 344 |
| Eco47I | GGWCC | 1 cut(s) | 697 |
| Eco47III | AGCGCT | 1 cut(s) | 518 |
| Eco57I | CTGAAG | 1 cut(s) | 266 |
| Eco88I | CYCGRG | 1 cut(s) | 143 |
| EcoT14I | CCWWGG | 1 cut(s) | 344 |
| ErhI | CCWWGG | 1 cut(s) | 344 |
| FaeI | CATG | 6 cut(s) | 32, 249, 444, 451, 464, 569 |
| FaqI | GGGAC | 1 cut(s) | 698 |
| FatI | CATG | 6 cut(s) | 28, 245, 440, 447, 460, 565 |
| Fnu4HI | GCNGC | 2 cut(s) | 260, 520 |
| Fsp4HI | GCNGC | 2 cut(s) | 260, 520 |
| GlaI | GCGC | 2 cut(s) | 69, 518 |
| GluI | GCNGC | 2 cut(s) | 260, 520 |
| GsaI | CCCAGC | 1 cut(s) | 526 |
| GsuI | CTGGAG | 3 cut(s) | 60, 116, 172 |
| HaeII | RGCGCY | 1 cut(s) | 520 |
| HaeIII | GGCC | 4 cut(s) | 161, 343, 633, 649 |
| HapII | CCGG | 2 cut(s) | 110, 700 |
| HhaI | GCGC | 2 cut(s) | 70, 519 |
| Hin1II | CATG | 6 cut(s) | 32, 249, 444, 451, 464, 569 |
| Hin6I | GCGC | 2 cut(s) | 68, 517 |
| HinP1I | GCGC | 2 cut(s) | 68, 517 |
| HincII | GTYRAC | 2 cut(s) | 136, 240 |
| HindII | GTYRAC | 2 cut(s) | 136, 240 |
| HindIII | AAGCTT | 1 cut(s) | 731 |
| HinfI | GANTC | 3 cut(s) | 54, 573, 597 |
| HpaII | CCGG | 2 cut(s) | 110, 700 |
| HphI | GGTGA | 2 cut(s) | 92, 758 |
| Hpy166II | GTNNAC | 4 cut(s) | 136, 240, 311, 766 |
| Hpy188I | TCNGA | 1 cut(s) | 230 |
| Hpy188III | TCNNGA | 4 cut(s) | 95, 145, 151, 637 |
| Hpy8I | GTNNAC | 4 cut(s) | 136, 240, 311, 766 |
| HpyAV | CCTTC | 3 cut(s) | 244, 660, 703 |
| HpyCH4III | ACNGT | 3 cut(s) | 80, 133, 689 |
| HpyCH4IV | ACGT | 1 cut(s) | 370 |
| HpyCH4V | TGCA | 5 cut(s) | 25, 234, 447, 670, 746 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 349, 428 |
| HpyF3I | CTNAG | 4 cut(s) | 50, 469, 534, 825 |
| HpySE526I | ACGT | 1 cut(s) | 370 |
| Hsp92II | CATG | 6 cut(s) | 32, 249, 444, 451, 464, 569 |
| HspAI | GCGC | 2 cut(s) | 68, 517 |
| KpnI | GGTACC | 1 cut(s) | 173 |
| Kzo9I | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| LmnI | GCTCC | 3 cut(s) | 121, 153, 349 |
| Lsp1109I | GCAGC | 2 cut(s) | 271, 506 |
| LweI | GCATC | 2 cut(s) | 55, 221 |
| MaeII | ACGT | 1 cut(s) | 370 |
| MaeIII | GTNAC | 1 cut(s) | 15 |
| MalI | GATC | 6 cut(s) | 116, 149, 227, 402, 563, 756 |
| MboI | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| MboII | GAAGA | 6 cut(s) | 74, 81, 198, 490, 609, 650 |
| MflI | RGATCY | 2 cut(s) | 147, 400 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MlsI | TGGCCA | 1 cut(s) | 343 |
| MluCI | AATT | 7 cut(s) | 330, 382, 455, 555, 601, 748, 793 |
| MluNI | TGGCCA | 1 cut(s) | 343 |
| MlyI | GAGTC | 1 cut(s) | 606 |
| MmeI | TCCRAC | 1 cut(s) | 353 |
| MnlI | CCTC | 7 cut(s) | 152, 414, 520, 531, 577, 644, 785 |
| Mox20I | TGGCCA | 1 cut(s) | 343 |
| MroXI | GAANNNNTTC | 1 cut(s) | 485 |
| MscI | TGGCCA | 1 cut(s) | 343 |
| MseI | TTAA | 4 cut(s) | 359, 408, 513, 579 |
| Msp20I | TGGCCA | 1 cut(s) | 343 |
| MspCI | CTTAAG | 1 cut(s) | 512 |
| MspI | CCGG | 2 cut(s) | 110, 700 |
| MspR9I | CCNGG | 1 cut(s) | 110 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 349, 428 |
| NciI | CCSGG | 1 cut(s) | 110 |
| NdeII | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| NlaIII | CATG | 6 cut(s) | 32, 249, 444, 451, 464, 569 |
| NlaIV | GGNNCC | 3 cut(s) | 171, 402, 418 |
| NspI | RCATGY | 2 cut(s) | 444, 451 |
| PaeI | GCATGC | 1 cut(s) | 451 |
| PaeR7I | CTCGAG | 1 cut(s) | 143 |
| PciI | ACATGT | 1 cut(s) | 440 |
| PdmI | GAANNNNTTC | 1 cut(s) | 485 |
| PfeI | GAWTC | 2 cut(s) | 54, 573 |
| PkrI | GCNGC | 2 cut(s) | 261, 521 |
| PleI | GAGTC | 1 cut(s) | 605 |
| PpsI | GAGTC | 1 cut(s) | 605 |
| PscI | ACATGT | 1 cut(s) | 440 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| Psp1406I | AACGTT | 1 cut(s) | 370 |
| PspFI | CCCAGC | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 3 cut(s) | 171, 402, 418 |
| PspPI | GGNCC | 1 cut(s) | 697 |
| PsuI | RGATCY | 2 cut(s) | 147, 400 |
| RsaI | GTAC | 4 cut(s) | 171, 203, 310, 366 |
| RsaNI | GTAC | 4 cut(s) | 170, 202, 309, 365 |
| SaqAI | TTAA | 4 cut(s) | 359, 408, 513, 579 |
| SatI | GCNGC | 2 cut(s) | 260, 520 |
| Sau3AI | GATC | 6 cut(s) | 114, 147, 225, 400, 561, 754 |
| Sau96I | GGNCC | 1 cut(s) | 697 |
| ScaI | AGTACT | 1 cut(s) | 203 |
| SchI | GAGTC | 1 cut(s) | 606 |
| ScrFI | CCNGG | 1 cut(s) | 110 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SfaNI | GCATC | 2 cut(s) | 55, 221 |
| Sfr274I | CTCGAG | 1 cut(s) | 143 |
| SinI | GGWCC | 1 cut(s) | 697 |
| SlaI | CTCGAG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 3 cut(s) | 143, 512, 635 |
| SmoI | CTYRAG | 3 cut(s) | 143, 512, 635 |
| SphI | GCATGC | 1 cut(s) | 451 |
| Sse9I | AATT | 7 cut(s) | 330, 382, 455, 555, 601, 748, 793 |
| SsiI | CCGC | 1 cut(s) | 420 |
| SspI | AATATT | 1 cut(s) | 484 |
| StyD4I | CCNGG | 1 cut(s) | 108 |
| StyI | CCWWGG | 1 cut(s) | 344 |
| TaaI | ACNGT | 3 cut(s) | 80, 133, 689 |
| TaiI | ACGT | 1 cut(s) | 373 |
| TaqI | TCGA | 1 cut(s) | 144 |
| TasI | AATT | 7 cut(s) | 330, 382, 455, 555, 601, 748, 793 |
| TatI | WGTACW | 3 cut(s) | 201, 308, 364 |
| TfiI | GAWTC | 2 cut(s) | 54, 573 |
| Tru1I | TTAA | 4 cut(s) | 359, 408, 513, 579 |
| Tru9I | TTAA | 4 cut(s) | 359, 408, 513, 579 |
| TscAI | CASTG | 1 cut(s) | 677 |
| TseI | GCWGC | 2 cut(s) | 259, 519 |
| TspDTI | ATGAA | 5 cut(s) | 17, 46, 565, 650, 787 |
| TspRI | CASTG | 1 cut(s) | 677 |
| Vha464I | CTTAAG | 1 cut(s) | 512 |
| VpaK11BI | GGWCC | 1 cut(s) | 697 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XapI | RAATTY | 2 cut(s) | 330, 748 |
| XceI | RCATGY | 2 cut(s) | 444, 451 |
| XhoI | CTCGAG | 1 cut(s) | 143 |
| XmnI | GAANNNNTTC | 1 cut(s) | 485 |
| ZrmI | AGTACT | 1 cut(s) | 203 |