Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 567 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1195 |
| AccI | GTMKAC | 1 cut(s) | 1257 |
| AciI | CCGC | 3 cut(s) | 948, 1169, 1656 |
| AclWI | GGATC | 3 cut(s) | 1131, 1179, 1776 |
| AcsI | RAATTY | 9 cut(s) | 40, 105, 213, 439, 826, 1080, 1139, 1368, 1611 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1105, 1586, 1885 |
| AflII | CTTAAG | 1 cut(s) | 1480 |
| AflIII | ACRYGT | 1 cut(s) | 1742 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 972, 1004, 1449, 1481, 1569, 1601 |
| AleI | CACNNNNGTG | 3 cut(s) | 1482, 1602, 1820 |
| Alw21I | GWGCWC | 3 cut(s) | 178, 1349, 1701 |
| AlwI | GGATC | 3 cut(s) | 1131, 1179, 1776 |
| AoxI | GGCC | 1 cut(s) | 1298 |
| ApeKI | GCWGC | 3 cut(s) | 100, 275, 1643 |
| ApoI | RAATTY | 9 cut(s) | 40, 105, 213, 439, 826, 1080, 1139, 1368, 1611 |
| AspS9I | GGNCC | 3 cut(s) | 625, 1223, 1673 |
| AsuHPI | GGTGA | 2 cut(s) | 1022, 1619 |
| AsuNHI | GCTAGC | 1 cut(s) | 232 |
| AvaII | GGWCC | 3 cut(s) | 625, 1223, 1673 |
| AxyI | CCTNAGG | 1 cut(s) | 876 |
| BanII | GRGCYC | 3 cut(s) | 1349, 1701, 1815 |
| BauI | CACGAG | 1 cut(s) | 279 |
| Bbv12I | GWGCWC | 3 cut(s) | 178, 1349, 1701 |
| BbvI | GCAGC | 3 cut(s) | 87, 262, 1630 |
| BccI | CCATC | 5 cut(s) | 263, 429, 514, 533, 665 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1685, 1719 |
| BciVI | GTATCC | 3 cut(s) | 1146, 1430, 1542 |
| BclI | TGATCA | 1 cut(s) | 322 |
| BfaI | CTAG | 3 cut(s) | 36, 233, 591 |
| BfrI | CTTAAG | 1 cut(s) | 1480 |
| BfuI | GTATCC | 3 cut(s) | 1146, 1430, 1542 |
| BisI | GCNGC | 4 cut(s) | 101, 276, 1644, 1657 |
| BlsI | GCNGC | 4 cut(s) | 102, 277, 1645, 1658 |
| Bme18I | GGWCC | 3 cut(s) | 625, 1223, 1673 |
| BmgT120I | GGNCC | 3 cut(s) | 625, 1223, 1673 |
| BmiI | GGNNCC | 3 cut(s) | 358, 1183, 1578 |
| BmsI | GCATC | 4 cut(s) | 431, 466, 1014, 1865 |
| BmtI | GCTAGC | 1 cut(s) | 236 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 104, 136 |
| BpmI | CTGGAG | 2 cut(s) | 273, 635 |
| Bpu10I | CCTNAGC | 1 cut(s) | 701 |
| BpuEI | CTTGAG | 3 cut(s) | 184, 1566, 1621 |
| BsaJI | CCNNGG | 4 cut(s) | 360, 660, 1019, 1295 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1273, 1303 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1105, 1586, 1885 |
| Bse118I | RCCGGY | 1 cut(s) | 299 |
| Bse1I | ACTGG | 2 cut(s) | 1270, 1822 |
| Bse21I | CCTNAGG | 1 cut(s) | 876 |
| BseDI | CCNNGG | 4 cut(s) | 360, 660, 1019, 1295 |
| BseGI | GGATG | 3 cut(s) | 440, 676, 1029 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1105, 1586, 1885 |
| BseMII | CTCAG | 8 cut(s) | 162, 501, 890, 1069, 1158, 1334, 1426, 1666 |
| BseNI | ACTGG | 2 cut(s) | 1270, 1822 |
| BseRI | GAGGAG | 2 cut(s) | 1091, 1281 |
| BseXI | GCAGC | 3 cut(s) | 87, 262, 1630 |
| BseYI | CCCAGC | 1 cut(s) | 608 |
| BshFI | GGCC | 1 cut(s) | 1300 |
| BsiHKAI | GWGCWC | 3 cut(s) | 178, 1349, 1701 |
| BsiSI | CCGG | 1 cut(s) | 300 |
| BslFI | GGGAC | 1 cut(s) | 298 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1105, 1586, 1885 |
| BsmFI | GGGAC | 1 cut(s) | 298 |
| BsmI | GAATGC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 1300 |
| Bsp1286I | GDGCHC | 4 cut(s) | 178, 1349, 1701, 1815 |
| Bsp143I | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| Bsp19I | CCATGG | 1 cut(s) | 360 |
| BspACI | CCGC | 3 cut(s) | 948, 1169, 1656 |
| BspANI | GGCC | 1 cut(s) | 1300 |
| BspCNI | CTCAG | 8 cut(s) | 161, 502, 889, 1068, 1157, 1335, 1425, 1665 |
| BspHI | TCATGA | 1 cut(s) | 217 |
| BspLI | GGNNCC | 3 cut(s) | 358, 1183, 1578 |
| BspOI | GCTAGC | 1 cut(s) | 236 |
| BspPI | GGATC | 3 cut(s) | 1131, 1179, 1776 |
| BspTI | CTTAAG | 1 cut(s) | 1480 |
| BsrFI | RCCGGY | 1 cut(s) | 299 |
| BsrI | ACTGG | 2 cut(s) | 1270, 1822 |
| BssAI | RCCGGY | 1 cut(s) | 299 |
| BssECI | CCNNGG | 4 cut(s) | 360, 660, 1019, 1295 |
| BssMI | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| BssSI | CACGAG | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 4 cut(s) | 360, 660, 1019, 1295 |
| Bst2BI | CACGAG | 1 cut(s) | 279 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 641, 794 |
| BstAFI | CTTAAG | 1 cut(s) | 1480 |
| BstC8I | GCNNGC | 4 cut(s) | 13, 234, 297, 301 |
| BstDSI | CCRYGG | 1 cut(s) | 360 |
| BstF5I | GGATG | 3 cut(s) | 440, 676, 1029 |
| BstKTI | GATC | 5 cut(s) | 325, 844, 1126, 1174, 1771 |
| BstMBI | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 242, 383, 898, 956 |
| BstNSI | RCATGY | 1 cut(s) | 1746 |
| BstV1I | GCAGC | 3 cut(s) | 87, 262, 1630 |
| BstX2I | RGATCY | 1 cut(s) | 1123 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1220 |
| BstYI | RGATCY | 1 cut(s) | 1123 |
| Bsu36I | CCTNAGG | 1 cut(s) | 876 |
| BsuI | GTATCC | 3 cut(s) | 1146, 1430, 1542 |
| BsuRI | GGCC | 1 cut(s) | 1300 |
| BtgI | CCRYGG | 1 cut(s) | 360 |
| BtsCI | GGATG | 3 cut(s) | 440, 676, 1029 |
| BtsI | GCAGTG | 1 cut(s) | 1701 |
| BtsIMutI | CAGTG | 3 cut(s) | 193, 1701, 1815 |
| Cac8I | GCNNGC | 4 cut(s) | 13, 234, 297, 301 |
| CciI | TCATGA | 1 cut(s) | 217 |
| Cfr10I | RCCGGY | 1 cut(s) | 299 |
| Cfr13I | GGNCC | 3 cut(s) | 625, 1223, 1673 |
| CseI | GACGC | 3 cut(s) | 50, 468, 1268 |
| CviAII | CATG | 9 cut(s) | 218, 361, 407, 751, 964, 1252, 1390, 1504, 1743 |
| DpnI | GATC | 5 cut(s) | 324, 843, 1125, 1173, 1770 |
| DpnII | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| DraI | TTTAAA | 2 cut(s) | 1050, 1072 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1195 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1195 |
| Ecl136II | GAGCTC | 2 cut(s) | 1347, 1699 |
| Eco130I | CCWWGG | 4 cut(s) | 360, 660, 1019, 1295 |
| Eco24I | GRGCYC | 3 cut(s) | 1349, 1701, 1815 |
| Eco47I | GGWCC | 3 cut(s) | 625, 1223, 1673 |
| Eco53kI | GAGCTC | 2 cut(s) | 1347, 1699 |
| Eco81I | CCTNAGG | 1 cut(s) | 876 |
| EcoICRI | GAGCTC | 2 cut(s) | 1347, 1699 |
| EcoRI | GAATTC | 2 cut(s) | 439, 1080 |
| EcoT14I | CCWWGG | 4 cut(s) | 360, 660, 1019, 1295 |
| EcoT22I | ATGCAT | 1 cut(s) | 752 |
| EcoT38I | GRGCYC | 3 cut(s) | 1349, 1701, 1815 |
| ErhI | CCWWGG | 4 cut(s) | 360, 660, 1019, 1295 |
| FaeI | CATG | 9 cut(s) | 221, 364, 410, 754, 967, 1255, 1393, 1507, 1746 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 375, 407 |
| FaqI | GGGAC | 1 cut(s) | 298 |
| FatI | CATG | 9 cut(s) | 217, 360, 406, 750, 963, 1251, 1389, 1503, 1742 |
| FauI | CCCGC | 1 cut(s) | 955 |
| FbaI | TGATCA | 1 cut(s) | 322 |
| FblI | GTMKAC | 1 cut(s) | 1257 |
| Fnu4HI | GCNGC | 4 cut(s) | 101, 276, 1644, 1657 |
| FokI | GGATG | 3 cut(s) | 447, 683, 1036 |
| FriOI | GRGCYC | 3 cut(s) | 1349, 1701, 1815 |
| Fsp4HI | GCNGC | 4 cut(s) | 101, 276, 1644, 1657 |
| FspBI | CTAG | 3 cut(s) | 36, 233, 591 |
| GluI | GCNGC | 4 cut(s) | 101, 276, 1644, 1657 |
| GsaI | CCCAGC | 1 cut(s) | 612 |
| GsuI | CTGGAG | 2 cut(s) | 273, 635 |
| HaeIII | GGCC | 1 cut(s) | 1300 |
| HapII | CCGG | 1 cut(s) | 300 |
| HgaI | GACGC | 3 cut(s) | 50, 468, 1268 |
| Hin1II | CATG | 9 cut(s) | 221, 364, 410, 754, 967, 1255, 1393, 1507, 1746 |
| HincII | GTYRAC | 4 cut(s) | 118, 1258, 1501, 1857 |
| HindII | GTYRAC | 4 cut(s) | 118, 1258, 1501, 1857 |
| HindIII | AAGCTT | 2 cut(s) | 691, 764 |
| HpaI | GTTAAC | 1 cut(s) | 1501 |
| HpaII | CCGG | 1 cut(s) | 300 |
| HphI | GGTGA | 2 cut(s) | 1022, 1619 |
| Hpy166II | GTNNAC | 4 cut(s) | 118, 1258, 1501, 1857 |
| Hpy188I | TCNGA | 9 cut(s) | 495, 511, 825, 837, 996, 1086, 1152, 1696, 1749 |
| Hpy8I | GTNNAC | 4 cut(s) | 118, 1258, 1501, 1857 |
| Hpy99I | CGWCG | 2 cut(s) | 66, 1262 |
| HpyAV | CCTTC | 1 cut(s) | 500 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 641, 794 |
| HpyCH4V | TGCA | 6 cut(s) | 103, 410, 750, 1039, 1624, 1646 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 242, 383, 898, 956 |
| Hsp92II | CATG | 9 cut(s) | 221, 364, 410, 754, 967, 1255, 1393, 1507, 1746 |
| KroI | GCCGGC | 1 cut(s) | 299 |
| KroNI | GCCGGC | 1 cut(s) | 301 |
| Ksp22I | TGATCA | 1 cut(s) | 322 |
| KspAI | GTTAAC | 1 cut(s) | 1501 |
| Kzo9I | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| LmnI | GCTCC | 7 cut(s) | 241, 651, 664, 733, 1181, 1294, 1352 |
| Lsp1109I | GCAGC | 3 cut(s) | 87, 262, 1630 |
| LweI | GCATC | 4 cut(s) | 431, 466, 1014, 1865 |
| MaeI | CTAG | 3 cut(s) | 36, 233, 591 |
| MaeIII | GTNAC | 7 cut(s) | 412, 480, 1010, 1058, 1197, 1385, 1794 |
| MalI | GATC | 5 cut(s) | 324, 843, 1125, 1173, 1770 |
| MboI | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| MboII | GAAGA | 3 cut(s) | 912, 1902, 1910 |
| MfeI | CAATTG | 4 cut(s) | 334, 1175, 1193, 1790 |
| MflI | RGATCY | 1 cut(s) | 1123 |
| MhlI | GDGCHC | 4 cut(s) | 178, 1349, 1701, 1815 |
| MlyI | GAGTC | 3 cut(s) | 113, 280, 826 |
| MmeI | TCCRAC | 2 cut(s) | 1009, 1130 |
| Mph1103I | ATGCAT | 1 cut(s) | 752 |
| MroNI | GCCGGC | 1 cut(s) | 299 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1005, 1482, 1602, 1820 |
| MspA1I | CMGCKG | 1 cut(s) | 1656 |
| MspCI | CTTAAG | 1 cut(s) | 1480 |
| MspI | CCGG | 1 cut(s) | 300 |
| MunI | CAATTG | 4 cut(s) | 334, 1175, 1193, 1790 |
| Mva1269I | GAATGC | 1 cut(s) | 37 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 242, 383, 898, 956 |
| NaeI | GCCGGC | 1 cut(s) | 301 |
| NcoI | CCATGG | 1 cut(s) | 360 |
| NdeII | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| NgoMIV | GCCGGC | 1 cut(s) | 299 |
| NheI | GCTAGC | 1 cut(s) | 232 |
| NlaIII | CATG | 9 cut(s) | 221, 364, 410, 754, 967, 1255, 1393, 1507, 1746 |
| NlaIV | GGNNCC | 3 cut(s) | 358, 1183, 1578 |
| NmuCI | GTSAC | 4 cut(s) | 480, 1010, 1197, 1385 |
| NsiI | ATGCAT | 1 cut(s) | 752 |
| NspI | RCATGY | 1 cut(s) | 1746 |
| OliI | CACNNNNGTG | 3 cut(s) | 1482, 1602, 1820 |
| PagI | TCATGA | 1 cut(s) | 217 |
| PciI | ACATGT | 1 cut(s) | 1742 |
| PctI | GAATGC | 1 cut(s) | 37 |
| PdiI | GCCGGC | 1 cut(s) | 301 |
| PfeI | GAWTC | 9 cut(s) | 85, 183, 461, 469, 581, 913, 997, 1228, 1377 |
| PkrI | GCNGC | 4 cut(s) | 102, 277, 1645, 1658 |
| PleI | GAGTC | 3 cut(s) | 113, 280, 826 |
| PpsI | GAGTC | 3 cut(s) | 113, 280, 826 |
| PscI | ACATGT | 1 cut(s) | 1742 |
| PsiI | TTATAA | 1 cut(s) | 567 |
| Psp124BI | GAGCTC | 2 cut(s) | 1349, 1701 |
| PspFI | CCCAGC | 1 cut(s) | 608 |
| PspN4I | GGNNCC | 3 cut(s) | 358, 1183, 1578 |
| PspPI | GGNCC | 3 cut(s) | 625, 1223, 1673 |
| PsuI | RGATCY | 1 cut(s) | 1123 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1005, 1482, 1602, 1820 |
| SacI | GAGCTC | 2 cut(s) | 1349, 1701 |
| SalI | GTCGAC | 1 cut(s) | 1256 |
| SatI | GCNGC | 4 cut(s) | 101, 276, 1644, 1657 |
| Sau3AI | GATC | 5 cut(s) | 322, 841, 1123, 1171, 1768 |
| Sau96I | GGNCC | 3 cut(s) | 625, 1223, 1673 |
| SchI | GAGTC | 3 cut(s) | 113, 280, 826 |
| SduI | GDGCHC | 4 cut(s) | 178, 1349, 1701, 1815 |
| SfaNI | GCATC | 4 cut(s) | 431, 466, 1014, 1865 |
| SinI | GGWCC | 3 cut(s) | 625, 1223, 1673 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1005, 1482, 1602, 1820 |
| SmlI | CTYRAG | 4 cut(s) | 199, 1480, 1581, 1600 |
| SmoI | CTYRAG | 4 cut(s) | 199, 1480, 1581, 1600 |
| SsiI | CCGC | 3 cut(s) | 948, 1169, 1656 |
| SspI | AATATT | 1 cut(s) | 1495 |
| SspMI | CTAG | 3 cut(s) | 36, 233, 591 |
| SstI | GAGCTC | 2 cut(s) | 1349, 1701 |
| StyI | CCWWGG | 4 cut(s) | 360, 660, 1019, 1295 |
| TaaI | ACNGT | 3 cut(s) | 73, 641, 794 |
| TaqI | TCGA | 2 cut(s) | 109, 1257 |
| TaqII | GACCGA | 1 cut(s) | 1240 |
| TauI | GCSGC | 1 cut(s) | 1659 |
| TfiI | GAWTC | 9 cut(s) | 85, 183, 461, 469, 581, 913, 997, 1228, 1377 |
| TscAI | CASTG | 3 cut(s) | 193, 1708, 1822 |
| TseFI | GTSAC | 4 cut(s) | 480, 1010, 1197, 1385 |
| TseI | GCWGC | 3 cut(s) | 100, 275, 1643 |
| Tsp45I | GTSAC | 4 cut(s) | 480, 1010, 1197, 1385 |
| TspDTI | ATGAA | 5 cut(s) | 206, 234, 395, 1406, 1520 |
| TspGWI | ACGGA | 1 cut(s) | 1121 |
| TspRI | CASTG | 3 cut(s) | 193, 1708, 1822 |
| Vha464I | CTTAAG | 1 cut(s) | 1480 |
| VpaK11BI | GGWCC | 3 cut(s) | 625, 1223, 1673 |
| XapI | RAATTY | 9 cut(s) | 40, 105, 213, 439, 826, 1080, 1139, 1368, 1611 |
| XceI | RCATGY | 1 cut(s) | 1746 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1841 |
| XmiI | GTMKAC | 1 cut(s) | 1257 |
| XspI | CTAG | 3 cut(s) | 36, 233, 591 |
| Zsp2I | ATGCAT | 1 cut(s) | 752 |