ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 6 cut(s) | 81, 87, 108, 443, 832, 1185 |
| AclWI | GGATC | 2 cut(s) | 323, 734 |
| AcsI | RAATTY | 5 cut(s) | 401, 728, 750, 1000, 1023 |
| AcuI | CTGAAG | 3 cut(s) | 234, 302, 634 |
| AfaI | GTAC | 5 cut(s) | 29, 418, 995, 1153, 1203 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 139, 338, 1126 |
| AgsI | TTSAA | 8 cut(s) | 163, 221, 868, 916, 988, 1006, 1020, 1229 |
| AjnI | CCWGG | 2 cut(s) | 523, 972 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 243, 275 |
| AluBI | AGCT | 5 cut(s) | 40, 172, 242, 908, 1246 |
| AluI | AGCT | 5 cut(s) | 40, 172, 242, 908, 1246 |
| Alw21I | GWGCWC | 2 cut(s) | 42, 1248 |
| Alw26I | GTCTC | 5 cut(s) | 9, 144, 543, 794, 1183 |
| AlwI | GGATC | 2 cut(s) | 323, 734 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1106 |
| Ama87I | CYCGRG | 1 cut(s) | 428 |
| AoxI | GGCC | 1 cut(s) | 1012 |
| ApeKI | GCWGC | 3 cut(s) | 172, 350, 905 |
| ApoI | RAATTY | 5 cut(s) | 401, 728, 750, 1000, 1023 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 282, 314 |
| AspS9I | GGNCC | 2 cut(s) | 1012, 1213 |
| AsuHPI | GGTGA | 1 cut(s) | 17 |
| AsuII | TTCGAA | 1 cut(s) | 201 |
| AvaI | CYCGRG | 1 cut(s) | 428 |
| AvaII | GGWCC | 1 cut(s) | 1213 |
| BanII | GRGCYC | 2 cut(s) | 42, 1248 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1135, 1167 |
| BauI | CACGAG | 1 cut(s) | 224 |
| Bbv12I | GWGCWC | 2 cut(s) | 42, 1248 |
| BbvI | GCAGC | 3 cut(s) | 159, 337, 917 |
| BccI | CCATC | 4 cut(s) | 17, 217, 277, 739 |
| BciT130I | CCWGG | 2 cut(s) | 525, 974 |
| BcoDI | GTCTC | 5 cut(s) | 9, 144, 543, 794, 1183 |
| BfmI | CTRYAG | 1 cut(s) | 294 |
| BglII | AGATCT | 1 cut(s) | 645 |
| BisI | GCNGC | 3 cut(s) | 173, 351, 906 |
| BlpI | GCTNAGC | 1 cut(s) | 698 |
| BlsI | GCNGC | 3 cut(s) | 174, 352, 907 |
| BmcAI | AGTACT | 1 cut(s) | 418 |
| Bme1390I | CCNGG | 2 cut(s) | 525, 974 |
| Bme18I | GGWCC | 1 cut(s) | 1213 |
| BmeT110I | CYCGRG | 1 cut(s) | 428 |
| BmgT120I | GGNCC | 2 cut(s) | 1012, 1213 |
| BmrFI | CCNGG | 2 cut(s) | 525, 974 |
| BmsI | GCATC | 5 cut(s) | 138, 240, 597, 844, 1196 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 698 |
| Bpu14I | TTCGAA | 1 cut(s) | 201 |
| BpuEI | CTTGAG | 1 cut(s) | 222 |
| BsaBI | GATNNNNATC | 1 cut(s) | 867 |
| BsaI | GGTCTC | 1 cut(s) | 794 |
| BsaJI | CCNNGG | 3 cut(s) | 524, 559, 972 |
| BsaWI | WCCGGW | 1 cut(s) | 331 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 139, 338, 1126 |
| Bse1I | ACTGG | 2 cut(s) | 930, 1216 |
| Bse8I | GATNNNNATC | 1 cut(s) | 867 |
| BseBI | CCWGG | 2 cut(s) | 525, 974 |
| BseDI | CCNNGG | 3 cut(s) | 524, 559, 972 |
| BseGI | GGATG | 6 cut(s) | 129, 205, 231, 262, 288, 1181 |
| BseJI | GATNNNNATC | 1 cut(s) | 867 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 139, 338, 1126 |
| BseMII | CTCAG | 2 cut(s) | 813, 900 |
| BseNI | ACTGG | 2 cut(s) | 930, 1216 |
| BseRI | GAGGAG | 2 cut(s) | 643, 651 |
| BseXI | GCAGC | 3 cut(s) | 159, 337, 917 |
| BsgI | GTGCAG | 1 cut(s) | 659 |
| BshFI | GGCC | 1 cut(s) | 1014 |
| BsiHKAI | GWGCWC | 2 cut(s) | 42, 1248 |
| BsiHKCI | CYCGRG | 1 cut(s) | 428 |
| BsiSI | CCGG | 2 cut(s) | 332, 1140 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 139, 338, 1126 |
| BsmAI | GTCTC | 5 cut(s) | 9, 144, 543, 794, 1183 |
| BsmI | GAATGC | 4 cut(s) | 503, 602, 954, 972 |
| BsnI | GGCC | 1 cut(s) | 1014 |
| Bso31I | GGTCTC | 1 cut(s) | 794 |
| BsoBI | CYCGRG | 1 cut(s) | 428 |
| Bsp119I | TTCGAA | 1 cut(s) | 201 |
| Bsp1286I | GDGCHC | 2 cut(s) | 42, 1248 |
| Bsp143I | GATC | 3 cut(s) | 328, 645, 739 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 698 |
| BspACI | CCGC | 6 cut(s) | 81, 87, 108, 443, 832, 1185 |
| BspANI | GGCC | 1 cut(s) | 1014 |
| BspCNI | CTCAG | 2 cut(s) | 814, 901 |
| BspHI | TCATGA | 2 cut(s) | 397, 664 |
| BspMAI | CTGCAG | 1 cut(s) | 298 |
| BspPI | GGATC | 2 cut(s) | 323, 734 |
| BspQI | GCTCTTC | 1 cut(s) | 30 |
| BspT104I | TTCGAA | 1 cut(s) | 201 |
| BspTNI | GGTCTC | 1 cut(s) | 794 |
| BsrI | ACTGG | 2 cut(s) | 930, 1216 |
| BssECI | CCNNGG | 3 cut(s) | 524, 559, 972 |
| BssMI | GATC | 3 cut(s) | 328, 645, 739 |
| BssSI | CACGAG | 1 cut(s) | 224 |
| BssT1I | CCWWGG | 1 cut(s) | 559 |
| Bst2BI | CACGAG | 1 cut(s) | 224 |
| Bst2UI | CCWGG | 2 cut(s) | 525, 974 |
| Bst4CI | ACNGT | 1 cut(s) | 935 |
| Bst6I | CTCTTC | 4 cut(s) | 30, 321, 786, 1045 |
| BstBI | TTCGAA | 1 cut(s) | 201 |
| BstDEI | CTNAG | 3 cut(s) | 698, 822, 909 |
| BstF5I | GGATG | 6 cut(s) | 129, 205, 231, 262, 288, 1181 |
| BstKTI | GATC | 3 cut(s) | 331, 648, 742 |
| BstMAI | GTCTC | 5 cut(s) | 9, 144, 543, 794, 1183 |
| BstMBI | GATC | 3 cut(s) | 328, 645, 739 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 126, 1252 |
| BstNI | CCWGG | 2 cut(s) | 525, 974 |
| BstNSI | RCATGY | 2 cut(s) | 1099, 1279 |
| BstSCI | CCNGG | 2 cut(s) | 523, 972 |
| BstSFI | CTRYAG | 1 cut(s) | 294 |
| BstV1I | GCAGC | 3 cut(s) | 159, 337, 917 |
| BstX2I | RGATCY | 3 cut(s) | 328, 645, 739 |
| BstYI | RGATCY | 3 cut(s) | 328, 645, 739 |
| BsuRI | GGCC | 1 cut(s) | 1014 |
| BtsCI | GGATG | 6 cut(s) | 129, 205, 231, 262, 288, 1181 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1106 |
| CciI | TCATGA | 2 cut(s) | 397, 664 |
| Cfr13I | GGNCC | 2 cut(s) | 1012, 1213 |
| Csp6I | GTAC | 5 cut(s) | 28, 417, 994, 1152, 1202 |
| CviAII | CATG | 5 cut(s) | 398, 665, 785, 1096, 1276 |
| CviQI | GTAC | 5 cut(s) | 28, 417, 994, 1152, 1202 |
| DdeI | CTNAG | 3 cut(s) | 698, 822, 909 |
| DpnI | GATC | 3 cut(s) | 330, 647, 741 |
| DpnII | GATC | 3 cut(s) | 328, 645, 739 |
| Eam1104I | CTCTTC | 4 cut(s) | 30, 321, 786, 1045 |
| EarI | CTCTTC | 4 cut(s) | 30, 321, 786, 1045 |
| EciI | GGCGGA | 3 cut(s) | 70, 76, 97 |
| Ecl136II | GAGCTC | 2 cut(s) | 40, 1246 |
| Eco130I | CCWWGG | 1 cut(s) | 559 |
| Eco24I | GRGCYC | 2 cut(s) | 42, 1248 |
| Eco31I | GGTCTC | 1 cut(s) | 794 |
| Eco47I | GGWCC | 1 cut(s) | 1213 |
| Eco53kI | GAGCTC | 2 cut(s) | 40, 1246 |
| Eco57I | CTGAAG | 3 cut(s) | 234, 302, 634 |
| Eco88I | CYCGRG | 1 cut(s) | 428 |
| EcoICRI | GAGCTC | 2 cut(s) | 40, 1246 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1012 |
| EcoRI | GAATTC | 1 cut(s) | 1023 |
| EcoRII | CCWGG | 2 cut(s) | 523, 972 |
| EcoT14I | CCWWGG | 1 cut(s) | 559 |
| EcoT38I | GRGCYC | 2 cut(s) | 42, 1248 |
| ErhI | CCWWGG | 1 cut(s) | 559 |
| FaeI | CATG | 5 cut(s) | 401, 668, 788, 1099, 1279 |
| FatI | CATG | 5 cut(s) | 397, 664, 784, 1095, 1275 |
| Fnu4HI | GCNGC | 3 cut(s) | 173, 351, 906 |
| FokI | GGATG | 6 cut(s) | 116, 192, 218, 269, 295, 1168 |
| FriOI | GRGCYC | 2 cut(s) | 42, 1248 |
| Fsp4HI | GCNGC | 3 cut(s) | 173, 351, 906 |
| GluI | GCNGC | 3 cut(s) | 173, 351, 906 |
| HaeIII | GGCC | 1 cut(s) | 1014 |
| HapII | CCGG | 2 cut(s) | 332, 1140 |
| Hin1II | CATG | 5 cut(s) | 401, 668, 788, 1099, 1279 |
| HincII | GTYRAC | 6 cut(s) | 46, 312, 657, 777, 840, 1075 |
| HindII | GTYRAC | 6 cut(s) | 46, 312, 657, 777, 840, 1075 |
| HpaI | GTTAAC | 1 cut(s) | 1075 |
| HpaII | CCGG | 2 cut(s) | 332, 1140 |
| HphI | GGTGA | 1 cut(s) | 17 |
| Hpy166II | GTNNAC | 8 cut(s) | 46, 312, 475, 657, 777, 840, 1075, 1234 |
| Hpy188I | TCNGA | 6 cut(s) | 14, 214, 744, 823, 1192, 1198 |
| Hpy188III | TCNNGA | 8 cut(s) | 141, 195, 398, 590, 665, 851, 963, 1020 |
| Hpy8I | GTNNAC | 8 cut(s) | 46, 312, 475, 657, 777, 840, 1075, 1234 |
| HpyAV | CCTTC | 2 cut(s) | 857, 1137 |
| HpyCH4III | ACNGT | 1 cut(s) | 935 |
| HpyCH4V | TGCA | 7 cut(s) | 231, 296, 640, 723, 736, 954, 1279 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 126, 1252 |
| HpyF3I | CTNAG | 3 cut(s) | 698, 822, 909 |
| Hsp92II | CATG | 5 cut(s) | 401, 668, 788, 1099, 1279 |
| KspAI | GTTAAC | 1 cut(s) | 1075 |
| Kzo9I | GATC | 3 cut(s) | 328, 645, 739 |
| LguI | GCTCTTC | 1 cut(s) | 30 |
| LmnI | GCTCC | 2 cut(s) | 1243, 1251 |
| Lsp1109I | GCAGC | 3 cut(s) | 159, 337, 917 |
| LweI | GCATC | 5 cut(s) | 138, 240, 597, 844, 1196 |
| MaeIII | GTNAC | 2 cut(s) | 460, 921 |
| MalI | GATC | 3 cut(s) | 330, 647, 741 |
| MboI | GATC | 3 cut(s) | 328, 645, 739 |
| MboII | GAAGA | 9 cut(s) | 44, 47, 71, 308, 640, 773, 838, 989, 1062 |
| MflI | RGATCY | 3 cut(s) | 328, 645, 739 |
| MhlI | GDGCHC | 2 cut(s) | 42, 1248 |
| MlyI | GAGTC | 3 cut(s) | 652, 772, 1187 |
| MmeI | TCCRAC | 2 cut(s) | 496, 840 |
| MseI | TTAA | 5 cut(s) | 434, 468, 566, 1074, 1206 |
| MspA1I | CMGCKG | 1 cut(s) | 908 |
| MspI | CCGG | 2 cut(s) | 332, 1140 |
| MspR9I | CCNGG | 2 cut(s) | 525, 974 |
| Mva1269I | GAATGC | 4 cut(s) | 503, 602, 954, 972 |
| MvaI | CCWGG | 2 cut(s) | 525, 974 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 126, 1252 |
| NdeII | GATC | 3 cut(s) | 328, 645, 739 |
| NlaIII | CATG | 5 cut(s) | 401, 668, 788, 1099, 1279 |
| NspI | RCATGY | 2 cut(s) | 1099, 1279 |
| NspV | TTCGAA | 1 cut(s) | 201 |
| PagI | TCATGA | 2 cut(s) | 397, 664 |
| PciSI | GCTCTTC | 1 cut(s) | 30 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 27, 48 |
| PctI | GAATGC | 4 cut(s) | 503, 602, 954, 972 |
| PfeI | GAWTC | 7 cut(s) | 104, 191, 198, 411, 614, 818, 1103 |
| PkrI | GCNGC | 3 cut(s) | 174, 352, 907 |
| PleI | GAGTC | 3 cut(s) | 652, 772, 1187 |
| PpsI | GAGTC | 3 cut(s) | 652, 772, 1187 |
| Psp124BI | GAGCTC | 2 cut(s) | 42, 1248 |
| Psp6I | CCWGG | 2 cut(s) | 523, 972 |
| PspGI | CCWGG | 2 cut(s) | 523, 972 |
| PspPI | GGNCC | 2 cut(s) | 1012, 1213 |
| PstI | CTGCAG | 1 cut(s) | 298 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1106 |
| PsuI | RGATCY | 3 cut(s) | 328, 645, 739 |
| PvuII | CAGCTG | 1 cut(s) | 908 |
| RsaI | GTAC | 5 cut(s) | 29, 418, 995, 1153, 1203 |
| RsaNI | GTAC | 5 cut(s) | 28, 417, 994, 1152, 1202 |
| SacI | GAGCTC | 2 cut(s) | 42, 1248 |
| SapI | GCTCTTC | 1 cut(s) | 30 |
| SaqAI | TTAA | 5 cut(s) | 434, 468, 566, 1074, 1206 |
| SatI | GCNGC | 3 cut(s) | 173, 351, 906 |
| Sau3AI | GATC | 3 cut(s) | 328, 645, 739 |
| Sau96I | GGNCC | 2 cut(s) | 1012, 1213 |
| ScaI | AGTACT | 1 cut(s) | 418 |
| SchI | GAGTC | 3 cut(s) | 652, 772, 1187 |
| ScrFI | CCNGG | 2 cut(s) | 525, 974 |
| SduI | GDGCHC | 2 cut(s) | 42, 1248 |
| SfaNI | GCATC | 5 cut(s) | 138, 240, 597, 844, 1196 |
| SfcI | CTRYAG | 1 cut(s) | 294 |
| SfuI | TTCGAA | 1 cut(s) | 201 |
| SinI | GGWCC | 1 cut(s) | 1213 |
| SmlI | CTYRAG | 1 cut(s) | 237 |
| SmoI | CTYRAG | 1 cut(s) | 237 |
| SsiI | CCGC | 6 cut(s) | 81, 87, 108, 443, 832, 1185 |
| SstI | GAGCTC | 2 cut(s) | 42, 1248 |
| StyD4I | CCNGG | 2 cut(s) | 523, 972 |
| StyI | CCWWGG | 1 cut(s) | 559 |
| TaaI | ACNGT | 1 cut(s) | 935 |
| TaqI | TCGA | 3 cut(s) | 178, 201, 612 |
| TatI | WGTACW | 2 cut(s) | 416, 1201 |
| TfiI | GAWTC | 7 cut(s) | 104, 191, 198, 411, 614, 818, 1103 |
| Tru1I | TTAA | 5 cut(s) | 434, 468, 566, 1074, 1206 |
| Tru9I | TTAA | 5 cut(s) | 434, 468, 566, 1074, 1206 |
| TseI | GCWGC | 3 cut(s) | 172, 350, 905 |
| TspDTI | ATGAA | 6 cut(s) | 414, 510, 609, 773, 780, 947 |
| TspGWI | ACGGA | 1 cut(s) | 701 |
| VpaK11BI | GGWCC | 1 cut(s) | 1213 |
| XapI | RAATTY | 5 cut(s) | 401, 728, 750, 1000, 1023 |
| XceI | RCATGY | 2 cut(s) | 1099, 1279 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 275 |
| ZrmI | AGTACT | 1 cut(s) | 418 |