ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 465 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1006 |
| AccII | CGCG | 1 cut(s) | 214 |
| AciI | CCGC | 4 cut(s) | 214, 629, 634, 1249 |
| AclWI | GGATC | 3 cut(s) | 263, 276, 1057 |
| AcoI | YGGCCR | 2 cut(s) | 494, 782 |
| AcsI | RAATTY | 5 cut(s) | 250, 349, 564, 733, 1057 |
| AcuI | CTGAAG | 1 cut(s) | 58 |
| AfaI | GTAC | 2 cut(s) | 595, 863 |
| AfeI | AGCGCT | 1 cut(s) | 291 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 432, 492, 1006 |
| AgsI | TTSAA | 8 cut(s) | 152, 197, 229, 364, 539, 729, 813, 904 |
| AjnI | CCWGG | 3 cut(s) | 496, 771, 1067 |
| AluBI | AGCT | 5 cut(s) | 181, 192, 821, 1013, 1235 |
| AluI | AGCT | 5 cut(s) | 181, 192, 821, 1013, 1235 |
| Alw26I | GTCTC | 1 cut(s) | 1135 |
| AlwI | GGATC | 3 cut(s) | 263, 276, 1057 |
| Aor51HI | AGCGCT | 1 cut(s) | 291 |
| AoxI | GGCC | 5 cut(s) | 215, 494, 782, 852, 1238 |
| ApeKI | GCWGC | 2 cut(s) | 140, 422 |
| ApoI | RAATTY | 5 cut(s) | 250, 349, 564, 733, 1057 |
| AseI | ATTAAT | 1 cut(s) | 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| AspLEI | GCGC | 3 cut(s) | 292, 992, 1189 |
| AspS9I | GGNCC | 4 cut(s) | 37, 636, 769, 853 |
| AsuHPI | GGTGA | 1 cut(s) | 828 |
| AvaII | GGWCC | 3 cut(s) | 37, 636, 769 |
| AxyI | CCTNAGG | 1 cut(s) | 380 |
| BalI | TGGCCA | 2 cut(s) | 496, 784 |
| BamHI | GGATCC | 1 cut(s) | 268 |
| BbvI | GCAGC | 2 cut(s) | 127, 434 |
| BccI | CCATC | 3 cut(s) | 548, 911, 934 |
| BceAI | ACGGC | 1 cut(s) | 49 |
| BciT130I | CCWGG | 3 cut(s) | 498, 773, 1069 |
| BciVI | GTATCC | 1 cut(s) | 298 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcoDI | GTCTC | 1 cut(s) | 1135 |
| BfaI | CTAG | 1 cut(s) | 1236 |
| BfmI | CTRYAG | 1 cut(s) | 1273 |
| BfoI | RGCGCY | 2 cut(s) | 293, 993 |
| BfuAI | ACCTGC | 1 cut(s) | 465 |
| BfuI | GTATCC | 1 cut(s) | 298 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1246 |
| BisI | GCNGC | 3 cut(s) | 141, 215, 423 |
| BlsI | GCNGC | 3 cut(s) | 142, 216, 424 |
| Bme1390I | CCNGG | 3 cut(s) | 498, 773, 1069 |
| Bme18I | GGWCC | 3 cut(s) | 37, 636, 769 |
| BmgT120I | GGNCC | 4 cut(s) | 37, 636, 769, 853 |
| BmiI | GGNNCC | 6 cut(s) | 38, 39, 270, 638, 855, 922 |
| BmrFI | CCNGG | 3 cut(s) | 498, 773, 1069 |
| BmrI | ACTGGG | 1 cut(s) | 807 |
| BmsI | GCATC | 6 cut(s) | 44, 89, 539, 622, 1018, 1156 |
| BmuI | ACTGGG | 1 cut(s) | 807 |
| BoxI | GACNNNNGTC | 1 cut(s) | 459 |
| BpmI | CTGGAG | 2 cut(s) | 776, 1090 |
| Bpu10I | CCTNAGC | 2 cut(s) | 60, 843 |
| BsaI | GGTCTC | 1 cut(s) | 1135 |
| BsaJI | CCNNGG | 2 cut(s) | 1067, 1158 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 432, 492, 1006 |
| Bse1I | ACTGG | 2 cut(s) | 802, 869 |
| Bse21I | CCTNAGG | 1 cut(s) | 380 |
| Bse3DI | GCAATG | 3 cut(s) | 81, 686, 881 |
| BseBI | CCWGG | 3 cut(s) | 498, 773, 1069 |
| BseDI | CCNNGG | 2 cut(s) | 1067, 1158 |
| BseGI | GGATG | 3 cut(s) | 59, 605, 1219 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 432, 492, 1006 |
| BseMI | GCAATG | 3 cut(s) | 81, 686, 881 |
| BseMII | CTCAG | 2 cut(s) | 185, 422 |
| BseNI | ACTGG | 2 cut(s) | 802, 869 |
| BseXI | GCAGC | 2 cut(s) | 127, 434 |
| Bsh1236I | CGCG | 1 cut(s) | 214 |
| BshFI | GGCC | 5 cut(s) | 217, 496, 784, 854, 1240 |
| BslFI | GGGAC | 3 cut(s) | 23, 622, 686 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 432, 492, 1006 |
| BsmAI | GTCTC | 1 cut(s) | 1135 |
| BsmFI | GGGAC | 3 cut(s) | 23, 622, 686 |
| BsnI | GGCC | 5 cut(s) | 217, 496, 784, 854, 1240 |
| Bso31I | GGTCTC | 1 cut(s) | 1135 |
| Bsp143I | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| BspACI | CCGC | 4 cut(s) | 214, 629, 634, 1249 |
| BspANI | GGCC | 5 cut(s) | 217, 496, 784, 854, 1240 |
| BspCNI | CTCAG | 2 cut(s) | 184, 423 |
| BspFNI | CGCG | 1 cut(s) | 214 |
| BspHI | TCATGA | 1 cut(s) | 970 |
| BspLI | GGNNCC | 6 cut(s) | 38, 39, 270, 638, 855, 922 |
| BspMI | ACCTGC | 1 cut(s) | 465 |
| BspPI | GGATC | 3 cut(s) | 263, 276, 1057 |
| BspTNI | GGTCTC | 1 cut(s) | 1135 |
| BsrDI | GCAATG | 3 cut(s) | 81, 686, 881 |
| BsrI | ACTGG | 2 cut(s) | 802, 869 |
| BssECI | CCNNGG | 2 cut(s) | 1067, 1158 |
| BssMI | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| Bst2UI | CCWGG | 3 cut(s) | 498, 773, 1069 |
| Bst4CI | ACNGT | 1 cut(s) | 1159 |
| Bst6I | CTCTTC | 2 cut(s) | 225, 415 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 16, 1028 |
| BstC8I | GCNNGC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 5 cut(s) | 60, 171, 380, 431, 843 |
| BstDSI | CCRYGG | 1 cut(s) | 1158 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 430 |
| BstF5I | GGATG | 3 cut(s) | 59, 605, 1219 |
| BstFNI | CGCG | 1 cut(s) | 214 |
| BstH2I | RGCGCY | 2 cut(s) | 293, 993 |
| BstHHI | GCGC | 3 cut(s) | 292, 992, 1189 |
| BstKTI | GATC | 4 cut(s) | 271, 328, 970, 1065 |
| BstMAI | GTCTC | 1 cut(s) | 1135 |
| BstMBI | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 16, 296, 466, 631, 1019, 1028, 1246 |
| BstNI | CCWGG | 3 cut(s) | 498, 773, 1069 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 459 |
| BstSCI | CCNGG | 3 cut(s) | 496, 771, 1067 |
| BstSFI | CTRYAG | 1 cut(s) | 1273 |
| BstUI | CGCG | 1 cut(s) | 214 |
| BstV1I | GCAGC | 2 cut(s) | 127, 434 |
| BstX2I | RGATCY | 1 cut(s) | 268 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 876, 897 |
| BstYI | RGATCY | 1 cut(s) | 268 |
| Bsu36I | CCTNAGG | 1 cut(s) | 380 |
| BsuI | GTATCC | 1 cut(s) | 298 |
| BsuRI | GGCC | 5 cut(s) | 217, 496, 784, 854, 1240 |
| BtgI | CCRYGG | 1 cut(s) | 1158 |
| BtgZI | GCGATG | 1 cut(s) | 112 |
| BtsCI | GGATG | 3 cut(s) | 59, 605, 1219 |
| BtsIMutI | CAGTG | 4 cut(s) | 664, 876, 902, 912 |
| BveI | ACCTGC | 1 cut(s) | 465 |
| Cac8I | GCNNGC | 1 cut(s) | 627 |
| CciI | TCATGA | 1 cut(s) | 970 |
| CfoI | GCGC | 3 cut(s) | 292, 992, 1189 |
| Cfr13I | GGNCC | 4 cut(s) | 37, 636, 769, 853 |
| CseI | GACGC | 1 cut(s) | 449 |
| CsiI | ACCWGGT | 1 cut(s) | 771 |
| Csp6I | GTAC | 2 cut(s) | 594, 862 |
| CviAII | CATG | 7 cut(s) | 16, 300, 368, 610, 971, 1086, 1181 |
| CviQI | GTAC | 2 cut(s) | 594, 862 |
| DdeI | CTNAG | 5 cut(s) | 60, 171, 380, 431, 843 |
| DpnI | GATC | 4 cut(s) | 270, 327, 969, 1064 |
| DpnII | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| DraI | TTTAAA | 4 cut(s) | 49, 276, 345, 739 |
| EaeI | YGGCCR | 2 cut(s) | 494, 782 |
| Eam1104I | CTCTTC | 2 cut(s) | 225, 415 |
| EarI | CTCTTC | 2 cut(s) | 225, 415 |
| Eco147I | AGGCCT | 1 cut(s) | 1240 |
| Eco31I | GGTCTC | 1 cut(s) | 1135 |
| Eco47I | GGWCC | 3 cut(s) | 37, 636, 769 |
| Eco47III | AGCGCT | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 1 cut(s) | 58 |
| Eco81I | CCTNAGG | 1 cut(s) | 380 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 430 |
| EcoO109I | RGGNCCY | 2 cut(s) | 37, 853 |
| EcoRII | CCWGG | 3 cut(s) | 496, 771, 1067 |
| EcoT22I | ATGCAT | 2 cut(s) | 532, 615 |
| FaeI | CATG | 7 cut(s) | 19, 303, 371, 613, 974, 1089, 1184 |
| FaqI | GGGAC | 3 cut(s) | 23, 622, 686 |
| FatI | CATG | 7 cut(s) | 15, 299, 367, 609, 970, 1085, 1180 |
| FauI | CCCGC | 1 cut(s) | 1242 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 3 cut(s) | 141, 215, 423 |
| FokI | GGATG | 3 cut(s) | 66, 592, 1226 |
| Fsp4HI | GCNGC | 3 cut(s) | 141, 215, 423 |
| FspBI | CTAG | 1 cut(s) | 1236 |
| GlaI | GCGC | 3 cut(s) | 291, 991, 1188 |
| GluI | GCNGC | 3 cut(s) | 141, 215, 423 |
| GsuI | CTGGAG | 2 cut(s) | 776, 1090 |
| HaeII | RGCGCY | 2 cut(s) | 293, 993 |
| HaeIII | GGCC | 5 cut(s) | 217, 496, 784, 854, 1240 |
| HgaI | GACGC | 1 cut(s) | 449 |
| HhaI | GCGC | 3 cut(s) | 292, 992, 1189 |
| Hin1II | CATG | 7 cut(s) | 19, 303, 371, 613, 974, 1089, 1184 |
| Hin6I | GCGC | 3 cut(s) | 290, 990, 1187 |
| HinP1I | GCGC | 3 cut(s) | 290, 990, 1187 |
| HincII | GTYRAC | 1 cut(s) | 910 |
| HindII | GTYRAC | 1 cut(s) | 910 |
| HindIII | AAGCTT | 1 cut(s) | 819 |
| HinfI | GANTC | 7 cut(s) | 175, 441, 518, 618, 880, 1051, 1117 |
| HpaI | GTTAAC | 1 cut(s) | 910 |
| HphI | GGTGA | 1 cut(s) | 828 |
| Hpy166II | GTNNAC | 3 cut(s) | 320, 769, 910 |
| Hpy188I | TCNGA | 5 cut(s) | 77, 174, 432, 454, 580 |
| Hpy188III | TCNNGA | 4 cut(s) | 729, 755, 971, 1145 |
| Hpy8I | GTNNAC | 3 cut(s) | 320, 769, 910 |
| HpyAV | CCTTC | 6 cut(s) | 112, 223, 532, 844, 898, 1142 |
| HpyCH4III | ACNGT | 1 cut(s) | 1159 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 16, 296, 466, 631, 1019, 1028, 1246 |
| HpyF3I | CTNAG | 5 cut(s) | 60, 171, 380, 431, 843 |
| Hsp92II | CATG | 7 cut(s) | 19, 303, 371, 613, 974, 1089, 1184 |
| HspAI | GCGC | 3 cut(s) | 290, 990, 1187 |
| KflI | GGGWCCC | 1 cut(s) | 37 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| KspAI | GTTAAC | 1 cut(s) | 910 |
| Kzo9I | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| LmnI | GCTCC | 3 cut(s) | 381, 436, 1018 |
| Lsp1109I | GCAGC | 2 cut(s) | 127, 434 |
| LweI | GCATC | 6 cut(s) | 44, 89, 539, 622, 1018, 1156 |
| MabI | ACCWGGT | 1 cut(s) | 771 |
| MaeI | CTAG | 1 cut(s) | 1236 |
| MaeIII | GTNAC | 2 cut(s) | 166, 1199 |
| MalI | GATC | 4 cut(s) | 270, 327, 969, 1064 |
| MboI | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| MboII | GAAGA | 7 cut(s) | 16, 102, 153, 212, 402, 684, 703 |
| MfeI | CAATTG | 2 cut(s) | 1023, 1204 |
| MflI | RGATCY | 1 cut(s) | 268 |
| MlsI | TGGCCA | 2 cut(s) | 496, 784 |
| MluNI | TGGCCA | 2 cut(s) | 496, 784 |
| MlyI | GAGTC | 1 cut(s) | 184 |
| MmeI | TCCRAC | 2 cut(s) | 371, 477 |
| Mox20I | TGGCCA | 2 cut(s) | 496, 784 |
| Mph1103I | ATGCAT | 2 cut(s) | 532, 615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MscI | TGGCCA | 2 cut(s) | 496, 784 |
| MslI | CAYNNNNRTG | 3 cut(s) | 869, 938, 1112 |
| Msp20I | TGGCCA | 2 cut(s) | 496, 784 |
| MspA1I | CMGCKG | 1 cut(s) | 629 |
| MspR9I | CCNGG | 3 cut(s) | 498, 773, 1069 |
| MunI | CAATTG | 2 cut(s) | 1023, 1204 |
| MvaI | CCWGG | 3 cut(s) | 498, 773, 1069 |
| MvnI | CGCG | 1 cut(s) | 214 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 16, 296, 466, 631, 1019, 1028, 1246 |
| NdeII | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| NlaIII | CATG | 7 cut(s) | 19, 303, 371, 613, 974, 1089, 1184 |
| NlaIV | GGNNCC | 6 cut(s) | 38, 39, 270, 638, 855, 922 |
| NsiI | ATGCAT | 2 cut(s) | 532, 615 |
| PagI | TCATGA | 1 cut(s) | 970 |
| PceI | AGGCCT | 1 cut(s) | 1240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 6 cut(s) | 441, 518, 618, 880, 1051, 1117 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1006 |
| PkrI | GCNGC | 3 cut(s) | 142, 216, 424 |
| PleI | GAGTC | 1 cut(s) | 183 |
| PpsI | GAGTC | 1 cut(s) | 183 |
| PpuMI | RGGWCCY | 1 cut(s) | 37 |
| PshAI | GACNNNNGTC | 1 cut(s) | 459 |
| PshBI | ATTAAT | 1 cut(s) | 155 |
| Psp5II | RGGWCCY | 1 cut(s) | 37 |
| Psp6I | CCWGG | 3 cut(s) | 496, 771, 1067 |
| PspGI | CCWGG | 3 cut(s) | 496, 771, 1067 |
| PspN4I | GGNNCC | 6 cut(s) | 38, 39, 270, 638, 855, 922 |
| PspPI | GGNCC | 4 cut(s) | 37, 636, 769, 853 |
| PspPPI | RGGWCCY | 1 cut(s) | 37 |
| PsuI | RGATCY | 1 cut(s) | 268 |
| RsaI | GTAC | 2 cut(s) | 595, 863 |
| RsaNI | GTAC | 2 cut(s) | 594, 862 |
| RseI | CAYNNNNRTG | 3 cut(s) | 869, 938, 1112 |
| SatI | GCNGC | 3 cut(s) | 141, 215, 423 |
| Sau3AI | GATC | 4 cut(s) | 268, 325, 967, 1062 |
| Sau96I | GGNCC | 4 cut(s) | 37, 636, 769, 853 |
| SchI | GAGTC | 1 cut(s) | 184 |
| ScrFI | CCNGG | 3 cut(s) | 498, 773, 1069 |
| SexAI | ACCWGGT | 1 cut(s) | 771 |
| SfaNI | GCATC | 6 cut(s) | 44, 89, 539, 622, 1018, 1156 |
| SfcI | CTRYAG | 1 cut(s) | 1273 |
| SinI | GGWCC | 3 cut(s) | 37, 636, 769 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 869, 938, 1112 |
| SseBI | AGGCCT | 1 cut(s) | 1240 |
| SsiI | CCGC | 4 cut(s) | 214, 629, 634, 1249 |
| SspMI | CTAG | 1 cut(s) | 1236 |
| StuI | AGGCCT | 1 cut(s) | 1240 |
| StyD4I | CCNGG | 3 cut(s) | 496, 771, 1067 |
| TaaI | ACNGT | 1 cut(s) | 1159 |
| TaqI | TCGA | 1 cut(s) | 616 |
| TatI | WGTACW | 1 cut(s) | 861 |
| TauI | GCSGC | 1 cut(s) | 217 |
| TfiI | GAWTC | 6 cut(s) | 441, 518, 618, 880, 1051, 1117 |
| TscAI | CASTG | 4 cut(s) | 664, 876, 902, 919 |
| TseI | GCWGC | 2 cut(s) | 140, 422 |
| TspDTI | ATGAA | 4 cut(s) | 17, 347, 655, 1109 |
| TspGWI | ACGGA | 3 cut(s) | 262, 1005, 1093 |
| TspRI | CASTG | 4 cut(s) | 664, 876, 902, 919 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1006 |
| VpaK11BI | GGWCC | 3 cut(s) | 37, 636, 769 |
| VspI | ATTAAT | 1 cut(s) | 155 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 430 |
| XapI | RAATTY | 5 cut(s) | 250, 349, 564, 733, 1057 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |
| XspI | CTAG | 1 cut(s) | 1236 |
| Zsp2I | ATGCAT | 2 cut(s) | 532, 615 |