Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dimer_Tnp_hAT | PF05699 | 242 - 310 | 5.8e-13 | hAT family C-terminal dimerisation region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 394 |
| AccI | GTMKAC | 1 cut(s) | 716 |
| AciI | CCGC | 6 cut(s) | 143, 420, 533, 653, 1100, 1315 |
| AclWI | GGATC | 6 cut(s) | 648, 652, 968, 1025, 1038, 1043 |
| AcsI | RAATTY | 1 cut(s) | 784 |
| AfaI | GTAC | 2 cut(s) | 250, 1135 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 392, 744, 873 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 587, 619 |
| AluBI | AGCT | 4 cut(s) | 53, 203, 685, 1281 |
| AluI | AGCT | 4 cut(s) | 53, 203, 685, 1281 |
| Alw21I | GWGCWC | 1 cut(s) | 848 |
| Alw26I | GTCTC | 1 cut(s) | 376 |
| AlwI | GGATC | 6 cut(s) | 648, 652, 968, 1025, 1038, 1043 |
| Ama87I | CYCGRG | 1 cut(s) | 795 |
| ApeKI | GCWGC | 1 cut(s) | 530 |
| ApoI | RAATTY | 1 cut(s) | 784 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 858 |
| AspS9I | GGNCC | 1 cut(s) | 470 |
| AsuHPI | GGTGA | 4 cut(s) | 106, 647, 726, 1420 |
| AvaI | CYCGRG | 1 cut(s) | 795 |
| AvaII | GGWCC | 1 cut(s) | 470 |
| BaeGI | GKGCMC | 1 cut(s) | 84 |
| BamHI | GGATCC | 1 cut(s) | 1030 |
| BbsI | GAAGAC | 1 cut(s) | 1313 |
| Bbv12I | GWGCWC | 1 cut(s) | 848 |
| BbvI | GCAGC | 1 cut(s) | 542 |
| BccI | CCATC | 6 cut(s) | 290, 492, 626, 1381, 1396, 1414 |
| BciVI | GTATCC | 1 cut(s) | 279 |
| BcoDI | GTCTC | 1 cut(s) | 376 |
| BfaI | CTAG | 4 cut(s) | 629, 720, 1254, 1432 |
| BfuAI | ACCTGC | 1 cut(s) | 394 |
| BfuI | GTATCC | 1 cut(s) | 279 |
| BglII | AGATCT | 1 cut(s) | 1078 |
| BisI | GCNGC | 2 cut(s) | 420, 531 |
| BlpI | GCTNAGC | 1 cut(s) | 54 |
| BlsI | GCNGC | 2 cut(s) | 421, 532 |
| BmcAI | AGTACT | 1 cut(s) | 1135 |
| Bme18I | GGWCC | 1 cut(s) | 470 |
| BmeT110I | CYCGRG | 1 cut(s) | 795 |
| BmgT120I | GGNCC | 1 cut(s) | 470 |
| BmiI | GGNNCC | 2 cut(s) | 311, 1032 |
| BmsI | GCATC | 4 cut(s) | 253, 406, 615, 830 |
| BpiI | GAAGAC | 1 cut(s) | 1313 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 2 cut(s) | 905, 1082 |
| Bsa29I | ATCGAT | 1 cut(s) | 972 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1352, 1424 |
| BsaI | GGTCTC | 1 cut(s) | 376 |
| BsaJI | CCNNGG | 1 cut(s) | 1285 |
| BsaWI | WCCGGW | 1 cut(s) | 772 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 392, 744, 873 |
| Bse118I | RCCGGY | 1 cut(s) | 116 |
| Bse1I | ACTGG | 2 cut(s) | 1034, 1115 |
| Bse3DI | GCAATG | 2 cut(s) | 521, 1310 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1352, 1424 |
| BseCI | ATCGAT | 1 cut(s) | 972 |
| BseDI | CCNNGG | 1 cut(s) | 1285 |
| BseGI | GGATG | 5 cut(s) | 251, 421, 630, 1323, 1425 |
| BseJI | GATNNNNATC | 2 cut(s) | 1352, 1424 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 392, 744, 873 |
| BseMI | GCAATG | 2 cut(s) | 521, 1310 |
| BseNI | ACTGG | 2 cut(s) | 1034, 1115 |
| BseRI | GAGGAG | 4 cut(s) | 496, 1164, 1167, 1185 |
| BseSI | GKGCMC | 1 cut(s) | 84 |
| BseXI | GCAGC | 1 cut(s) | 542 |
| BshVI | ATCGAT | 1 cut(s) | 972 |
| BsiHKAI | GWGCWC | 1 cut(s) | 848 |
| BsiHKCI | CYCGRG | 1 cut(s) | 795 |
| BsiSI | CCGG | 3 cut(s) | 117, 140, 773 |
| BslFI | GGGAC | 1 cut(s) | 775 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 392, 744, 873 |
| BsmAI | GTCTC | 1 cut(s) | 376 |
| BsmFI | GGGAC | 1 cut(s) | 775 |
| BsmI | GAATGC | 1 cut(s) | 617 |
| Bso31I | GGTCTC | 1 cut(s) | 376 |
| BsoBI | CYCGRG | 1 cut(s) | 795 |
| Bsp1286I | GDGCHC | 2 cut(s) | 84, 848 |
| Bsp1407I | TGTACA | 1 cut(s) | 248 |
| Bsp143I | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 54 |
| BspACI | CCGC | 6 cut(s) | 143, 420, 533, 653, 1100, 1315 |
| BspDI | ATCGAT | 1 cut(s) | 972 |
| BspLI | GGNNCC | 2 cut(s) | 311, 1032 |
| BspMI | ACCTGC | 1 cut(s) | 394 |
| BspPI | GGATC | 6 cut(s) | 648, 652, 968, 1025, 1038, 1043 |
| BspTNI | GGTCTC | 1 cut(s) | 376 |
| BsrDI | GCAATG | 2 cut(s) | 521, 1310 |
| BsrFI | RCCGGY | 1 cut(s) | 116 |
| BsrGI | TGTACA | 1 cut(s) | 248 |
| BsrI | ACTGG | 2 cut(s) | 1034, 1115 |
| BssAI | RCCGGY | 1 cut(s) | 116 |
| BssECI | CCNNGG | 1 cut(s) | 1285 |
| BssMI | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| BssT1I | CCWWGG | 1 cut(s) | 1285 |
| Bst6I | CTCTTC | 1 cut(s) | 180 |
| BstAUI | TGTACA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 2 cut(s) | 528, 903 |
| BstDEI | CTNAG | 2 cut(s) | 54, 935 |
| BstF5I | GGATG | 5 cut(s) | 251, 421, 630, 1323, 1425 |
| BstKTI | GATC | 9 cut(s) | 643, 660, 734, 972, 976, 1033, 1051, 1081, 1428 |
| BstMAI | GTCTC | 1 cut(s) | 376 |
| BstMBI | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| BstNSI | RCATGY | 3 cut(s) | 530, 593, 905 |
| BstSLI | GKGCMC | 1 cut(s) | 84 |
| BstV1I | GCAGC | 1 cut(s) | 542 |
| BstV2I | GAAGAC | 1 cut(s) | 1313 |
| BstX2I | RGATCY | 3 cut(s) | 657, 1030, 1078 |
| BstYI | RGATCY | 3 cut(s) | 657, 1030, 1078 |
| Bsu15I | ATCGAT | 1 cut(s) | 972 |
| BsuI | GTATCC | 1 cut(s) | 279 |
| BsuTUI | ATCGAT | 1 cut(s) | 972 |
| BtgZI | GCGATG | 1 cut(s) | 1406 |
| BtsCI | GGATG | 5 cut(s) | 251, 421, 630, 1323, 1425 |
| BveI | ACCTGC | 1 cut(s) | 394 |
| Cac8I | GCNNGC | 2 cut(s) | 528, 903 |
| Cfr10I | RCCGGY | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 1 cut(s) | 470 |
| ClaI | ATCGAT | 1 cut(s) | 972 |
| CseI | GACGC | 1 cut(s) | 1288 |
| Csp6I | GTAC | 2 cut(s) | 249, 1134 |
| CviAII | CATG | 6 cut(s) | 314, 527, 590, 616, 706, 902 |
| CviQI | GTAC | 2 cut(s) | 249, 1134 |
| DdeI | CTNAG | 2 cut(s) | 54, 935 |
| DpnI | GATC | 9 cut(s) | 642, 659, 733, 971, 975, 1032, 1050, 1080, 1427 |
| DpnII | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| Eam1104I | CTCTTC | 1 cut(s) | 180 |
| EarI | CTCTTC | 1 cut(s) | 180 |
| Eco130I | CCWWGG | 1 cut(s) | 1285 |
| Eco31I | GGTCTC | 1 cut(s) | 376 |
| Eco47I | GGWCC | 1 cut(s) | 470 |
| Eco88I | CYCGRG | 1 cut(s) | 795 |
| EcoT14I | CCWWGG | 1 cut(s) | 1285 |
| EcoT22I | ATGCAT | 1 cut(s) | 617 |
| ErhI | CCWWGG | 1 cut(s) | 1285 |
| FaeI | CATG | 6 cut(s) | 317, 530, 593, 619, 709, 905 |
| FaqI | GGGAC | 1 cut(s) | 775 |
| FatI | CATG | 6 cut(s) | 313, 526, 589, 615, 705, 901 |
| FauI | CCCGC | 1 cut(s) | 526 |
| FauNDI | CATATG | 1 cut(s) | 1341 |
| FblI | GTMKAC | 1 cut(s) | 716 |
| Fnu4HI | GCNGC | 2 cut(s) | 420, 531 |
| FokI | GGATG | 4 cut(s) | 258, 428, 637, 1330 |
| Fsp4HI | GCNGC | 2 cut(s) | 420, 531 |
| FspBI | CTAG | 4 cut(s) | 629, 720, 1254, 1432 |
| GluI | GCNGC | 2 cut(s) | 420, 531 |
| HapII | CCGG | 3 cut(s) | 117, 140, 773 |
| HgaI | GACGC | 1 cut(s) | 1288 |
| Hin1II | CATG | 6 cut(s) | 317, 530, 593, 619, 709, 905 |
| HindIII | AAGCTT | 2 cut(s) | 683, 1279 |
| HinfI | GANTC | 5 cut(s) | 371, 442, 502, 859, 998 |
| HpaII | CCGG | 3 cut(s) | 117, 140, 773 |
| HphI | GGTGA | 4 cut(s) | 106, 647, 726, 1420 |
| Hpy166II | GTNNAC | 3 cut(s) | 114, 506, 717 |
| Hpy188I | TCNGA | 3 cut(s) | 376, 698, 1003 |
| Hpy188III | TCNNGA | 4 cut(s) | 293, 1163, 1220, 1303 |
| Hpy8I | GTNNAC | 3 cut(s) | 114, 506, 717 |
| HpyAV | CCTTC | 3 cut(s) | 592, 1179, 1224 |
| HpyCH4V | TGCA | 6 cut(s) | 327, 526, 530, 615, 821, 901 |
| HpyF3I | CTNAG | 2 cut(s) | 54, 935 |
| Hsp92II | CATG | 6 cut(s) | 317, 530, 593, 619, 709, 905 |
| Kzo9I | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| LmnI | GCTCC | 1 cut(s) | 843 |
| LpnPI | CCDG | 7 cut(s) | 130, 153, 399, 786, 1047, 1056, 1128 |
| Lsp1109I | GCAGC | 1 cut(s) | 542 |
| LweI | GCATC | 4 cut(s) | 253, 406, 615, 830 |
| MaeI | CTAG | 4 cut(s) | 629, 720, 1254, 1432 |
| MaeIII | GTNAC | 2 cut(s) | 145, 701 |
| MalI | GATC | 9 cut(s) | 642, 659, 733, 971, 975, 1032, 1050, 1080, 1427 |
| MboI | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| MfeI | CAATTG | 1 cut(s) | 662 |
| MflI | RGATCY | 3 cut(s) | 657, 1030, 1078 |
| MhlI | GDGCHC | 2 cut(s) | 84, 848 |
| MluCI | AATT | 8 cut(s) | 60, 474, 554, 662, 784, 838, 993, 1054 |
| MlyI | GAGTC | 1 cut(s) | 511 |
| MmeI | TCCRAC | 1 cut(s) | 585 |
| Mph1103I | ATGCAT | 1 cut(s) | 617 |
| MroXI | GAANNNNTTC | 1 cut(s) | 858 |
| MseI | TTAA | 2 cut(s) | 410, 648 |
| MslI | CAYNNNNRTG | 3 cut(s) | 261, 826, 1373 |
| MspA1I | CMGCKG | 1 cut(s) | 533 |
| MspI | CCGG | 3 cut(s) | 117, 140, 773 |
| MunI | CAATTG | 1 cut(s) | 662 |
| Mva1269I | GAATGC | 1 cut(s) | 617 |
| NdeI | CATATG | 1 cut(s) | 1341 |
| NdeII | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| NlaIII | CATG | 6 cut(s) | 317, 530, 593, 619, 709, 905 |
| NlaIV | GGNNCC | 2 cut(s) | 311, 1032 |
| NmuCI | GTSAC | 1 cut(s) | 701 |
| NsiI | ATGCAT | 1 cut(s) | 617 |
| NspI | RCATGY | 3 cut(s) | 530, 593, 905 |
| PaeI | GCATGC | 2 cut(s) | 530, 905 |
| PctI | GAATGC | 1 cut(s) | 617 |
| PdmI | GAANNNNTTC | 1 cut(s) | 858 |
| PfeI | GAWTC | 4 cut(s) | 371, 442, 859, 998 |
| PkrI | GCNGC | 2 cut(s) | 421, 532 |
| PleI | GAGTC | 1 cut(s) | 510 |
| PpsI | GAGTC | 1 cut(s) | 510 |
| PspN4I | GGNNCC | 2 cut(s) | 311, 1032 |
| PspPI | GGNCC | 1 cut(s) | 470 |
| PsuI | RGATCY | 3 cut(s) | 657, 1030, 1078 |
| RsaI | GTAC | 2 cut(s) | 250, 1135 |
| RsaNI | GTAC | 2 cut(s) | 249, 1134 |
| RseI | CAYNNNNRTG | 3 cut(s) | 261, 826, 1373 |
| SaqAI | TTAA | 2 cut(s) | 410, 648 |
| SatI | GCNGC | 2 cut(s) | 420, 531 |
| Sau3AI | GATC | 9 cut(s) | 640, 657, 731, 969, 973, 1030, 1048, 1078, 1425 |
| Sau96I | GGNCC | 1 cut(s) | 470 |
| ScaI | AGTACT | 1 cut(s) | 1135 |
| SchI | GAGTC | 1 cut(s) | 511 |
| SduI | GDGCHC | 2 cut(s) | 84, 848 |
| SetI | ASST | 8 cut(s) | 55, 155, 205, 369, 388, 467, 687, 1283 |
| SfaNI | GCATC | 4 cut(s) | 253, 406, 615, 830 |
| SgrAI | CRCCGGYG | 1 cut(s) | 116 |
| SinI | GGWCC | 1 cut(s) | 470 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 261, 826, 1373 |
| SmlI | CTYRAG | 2 cut(s) | 884, 1061 |
| SmoI | CTYRAG | 2 cut(s) | 884, 1061 |
| SphI | GCATGC | 2 cut(s) | 530, 905 |
| Sse9I | AATT | 8 cut(s) | 60, 474, 554, 662, 784, 838, 993, 1054 |
| SsiI | CCGC | 6 cut(s) | 143, 420, 533, 653, 1100, 1315 |
| SspI | AATATT | 1 cut(s) | 928 |
| SspMI | CTAG | 4 cut(s) | 629, 720, 1254, 1432 |
| StyI | CCWWGG | 1 cut(s) | 1285 |
| TaqI | TCGA | 1 cut(s) | 972 |
| TasI | AATT | 8 cut(s) | 60, 474, 554, 662, 784, 838, 993, 1054 |
| TatI | WGTACW | 2 cut(s) | 248, 1133 |
| TauI | GCSGC | 1 cut(s) | 422 |
| TfiI | GAWTC | 4 cut(s) | 371, 442, 859, 998 |
| Tru1I | TTAA | 2 cut(s) | 410, 648 |
| Tru9I | TTAA | 2 cut(s) | 410, 648 |
| TseFI | GTSAC | 1 cut(s) | 701 |
| TseI | GCWGC | 1 cut(s) | 530 |
| Tsp45I | GTSAC | 1 cut(s) | 701 |
| TspGWI | ACGGA | 2 cut(s) | 1034, 1172 |
| VpaK11BI | GGWCC | 1 cut(s) | 470 |
| XapI | RAATTY | 1 cut(s) | 784 |
| XceI | RCATGY | 3 cut(s) | 530, 593, 905 |
| XmiI | GTMKAC | 1 cut(s) | 716 |
| XmnI | GAANNNNTTC | 1 cut(s) | 858 |
| XspI | CTAG | 4 cut(s) | 629, 720, 1254, 1432 |
| ZrmI | AGTACT | 1 cut(s) | 1135 |
| Zsp2I | ATGCAT | 1 cut(s) | 617 |