Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 5 |
| AccB1I | GGYRCC | 2 cut(s) | 5, 189 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 539 |
| AciI | CCGC | 5 cut(s) | 9, 12, 277, 309, 593 |
| AclWI | GGATC | 3 cut(s) | 78, 91, 339 |
| AcoI | YGGCCR | 1 cut(s) | 103 |
| AcuI | CTGAAG | 1 cut(s) | 183 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfaI | GTAC | 3 cut(s) | 7, 50, 437 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 358, 539 |
| AgsI | TTSAA | 2 cut(s) | 449, 466 |
| AjnI | CCWGG | 1 cut(s) | 192 |
| AluBI | AGCT | 6 cut(s) | 237, 259, 349, 405, 579, 722 |
| AluI | AGCT | 6 cut(s) | 237, 259, 349, 405, 579, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 261 |
| Alw26I | GTCTC | 2 cut(s) | 116, 286 |
| AlwI | GGATC | 3 cut(s) | 78, 91, 339 |
| Ama87I | CYCGRG | 1 cut(s) | 296 |
| AoxI | GGCC | 2 cut(s) | 103, 360 |
| AseI | ATTAAT | 1 cut(s) | 386 |
| Asp718I | GGTACC | 1 cut(s) | 5 |
| AspLEI | GCGC | 2 cut(s) | 170, 192 |
| AspS9I | GGNCC | 4 cut(s) | 20, 55, 360, 727 |
| AsuC2I | CCSGG | 1 cut(s) | 731 |
| AvaI | CYCGRG | 1 cut(s) | 296 |
| AvaII | GGWCC | 3 cut(s) | 20, 55, 727 |
| BalI | TGGCCA | 1 cut(s) | 105 |
| BamHI | GGATCC | 1 cut(s) | 83 |
| BanI | GGYRCC | 2 cut(s) | 5, 189 |
| BanII | GRGCYC | 2 cut(s) | 261, 502 |
| Bbv12I | GWGCWC | 1 cut(s) | 261 |
| BccI | CCATC | 1 cut(s) | 206 |
| BciT130I | CCWGG | 1 cut(s) | 194 |
| BcnI | CCSGG | 1 cut(s) | 731 |
| BcoDI | GTCTC | 2 cut(s) | 116, 286 |
| BfaI | CTAG | 1 cut(s) | 736 |
| BfoI | RGCGCY | 2 cut(s) | 171, 193 |
| BglII | AGATCT | 2 cut(s) | 70, 451 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 2 cut(s) | 194, 731 |
| Bme18I | GGWCC | 3 cut(s) | 20, 55, 727 |
| BmeT110I | CYCGRG | 1 cut(s) | 296 |
| BmgT120I | GGNCC | 4 cut(s) | 20, 55, 360, 727 |
| BmiI | GGNNCC | 5 cut(s) | 7, 85, 191, 501, 728 |
| BmrFI | CCNGG | 2 cut(s) | 194, 731 |
| BmsI | GCATC | 2 cut(s) | 535, 615 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 1 cut(s) | 329 |
| BpuMI | CCSGG | 1 cut(s) | 731 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 2 cut(s) | 503, 671 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 207, 236, 237, 266, 271, 301, 680, 710 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 358, 539 |
| BseBI | CCWGG | 1 cut(s) | 194 |
| BseDI | CCNNGG | 2 cut(s) | 503, 671 |
| BseGI | GGATG | 1 cut(s) | 526 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 358, 539 |
| BseMII | CTCAG | 3 cut(s) | 81, 255, 281 |
| BseRI | GAGGAG | 1 cut(s) | 397 |
| BshFI | GGCC | 2 cut(s) | 105, 362 |
| BshNI | GGYRCC | 2 cut(s) | 5, 189 |
| BsiHKAI | GWGCWC | 1 cut(s) | 261 |
| BsiHKCI | CYCGRG | 1 cut(s) | 296 |
| BsiSI | CCGG | 1 cut(s) | 730 |
| BslFI | GGGAC | 1 cut(s) | 464 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 358, 539 |
| BsmAI | GTCTC | 2 cut(s) | 116, 286 |
| BsmFI | GGGAC | 1 cut(s) | 464 |
| BsnI | GGCC | 2 cut(s) | 105, 362 |
| BsoBI | CYCGRG | 1 cut(s) | 296 |
| Bsp1286I | GDGCHC | 2 cut(s) | 261, 502 |
| Bsp1407I | TGTACA | 1 cut(s) | 435 |
| Bsp143I | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| Bsp19I | CCATGG | 1 cut(s) | 503 |
| BspACI | CCGC | 5 cut(s) | 9, 12, 277, 309, 593 |
| BspANI | GGCC | 2 cut(s) | 105, 362 |
| BspCNI | CTCAG | 3 cut(s) | 80, 256, 282 |
| BspLI | GGNNCC | 5 cut(s) | 7, 85, 191, 501, 728 |
| BspPI | GGATC | 3 cut(s) | 78, 91, 339 |
| BspQI | GCTCTTC | 1 cut(s) | 586 |
| BspT107I | GGYRCC | 2 cut(s) | 5, 189 |
| BsrGI | TGTACA | 1 cut(s) | 435 |
| BssECI | CCNNGG | 2 cut(s) | 503, 671 |
| BssMI | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssT1I | CCWWGG | 2 cut(s) | 503, 671 |
| Bst2UI | CCWGG | 1 cut(s) | 194 |
| Bst4CI | ACNGT | 2 cut(s) | 440, 566 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 586 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstAUI | TGTACA | 1 cut(s) | 435 |
| BstC8I | GCNNGC | 2 cut(s) | 32, 488 |
| BstDEI | CTNAG | 3 cut(s) | 67, 264, 290 |
| BstDSI | CCRYGG | 1 cut(s) | 503 |
| BstF5I | GGATG | 1 cut(s) | 526 |
| BstH2I | RGCGCY | 2 cut(s) | 171, 193 |
| BstHHI | GCGC | 2 cut(s) | 170, 192 |
| BstKTI | GATC | 7 cut(s) | 73, 86, 97, 270, 323, 334, 454 |
| BstMAI | GTCTC | 2 cut(s) | 116, 286 |
| BstMBI | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| BstNI | CCWGG | 1 cut(s) | 194 |
| BstNSI | RCATGY | 2 cut(s) | 436, 645 |
| BstSCI | CCNGG | 2 cut(s) | 192, 729 |
| BstX2I | RGATCY | 4 cut(s) | 70, 83, 331, 451 |
| BstYI | RGATCY | 4 cut(s) | 70, 83, 331, 451 |
| BsuRI | GGCC | 2 cut(s) | 105, 362 |
| BtgI | CCRYGG | 1 cut(s) | 503 |
| BtsCI | GGATG | 1 cut(s) | 526 |
| BtsI | GCAGTG | 1 cut(s) | 690 |
| BtsIMutI | CAGTG | 3 cut(s) | 558, 571, 690 |
| Cac8I | GCNNGC | 2 cut(s) | 32, 488 |
| CfoI | GCGC | 2 cut(s) | 170, 192 |
| Cfr13I | GGNCC | 4 cut(s) | 20, 55, 360, 727 |
| Csp6I | GTAC | 3 cut(s) | 6, 49, 436 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 660, 695 |
| CviAII | CATG | 6 cut(s) | 367, 433, 476, 504, 590, 642 |
| CviQI | GTAC | 3 cut(s) | 6, 49, 436 |
| DdeI | CTNAG | 3 cut(s) | 67, 264, 290 |
| DinI | GGCGCC | 1 cut(s) | 191 |
| DpnI | GATC | 7 cut(s) | 72, 85, 96, 269, 322, 333, 453 |
| DpnII | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| EaeI | YGGCCR | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 586 |
| EarI | CTCTTC | 2 cut(s) | 65, 586 |
| EciI | GGCGGA | 2 cut(s) | 292, 324 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| Eco130I | CCWWGG | 2 cut(s) | 503, 671 |
| Eco24I | GRGCYC | 2 cut(s) | 261, 502 |
| Eco47I | GGWCC | 3 cut(s) | 20, 55, 727 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| Eco57I | CTGAAG | 1 cut(s) | 183 |
| Eco88I | CYCGRG | 1 cut(s) | 296 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoO109I | RGGNCCY | 1 cut(s) | 55 |
| EcoRII | CCWGG | 1 cut(s) | 192 |
| EcoT14I | CCWWGG | 2 cut(s) | 503, 671 |
| EcoT38I | GRGCYC | 2 cut(s) | 261, 502 |
| EgeI | GGCGCC | 1 cut(s) | 191 |
| EheI | GGCGCC | 1 cut(s) | 191 |
| ErhI | CCWWGG | 2 cut(s) | 503, 671 |
| FaeI | CATG | 6 cut(s) | 370, 436, 479, 507, 593, 645 |
| FaqI | GGGAC | 1 cut(s) | 464 |
| FatI | CATG | 6 cut(s) | 366, 432, 475, 503, 589, 641 |
| FauI | CCCGC | 1 cut(s) | 586 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 513 |
| FriOI | GRGCYC | 2 cut(s) | 261, 502 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 1 cut(s) | 736 |
| GlaI | GCGC | 2 cut(s) | 169, 191 |
| GluI | GCNGC | 1 cut(s) | 12 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeII | RGCGCY | 2 cut(s) | 171, 193 |
| HaeIII | GGCC | 2 cut(s) | 105, 362 |
| HapII | CCGG | 1 cut(s) | 730 |
| HhaI | GCGC | 2 cut(s) | 170, 192 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 6 cut(s) | 370, 436, 479, 507, 593, 645 |
| Hin6I | GCGC | 2 cut(s) | 168, 190 |
| HinP1I | GCGC | 2 cut(s) | 168, 190 |
| HinfI | GANTC | 4 cut(s) | 43, 158, 251, 294 |
| HpaII | CCGG | 1 cut(s) | 730 |
| Hpy188I | TCNGA | 8 cut(s) | 70, 163, 244, 256, 272, 291, 412, 623 |
| Hpy188III | TCNNGA | 4 cut(s) | 74, 177, 352, 449 |
| HpyAV | CCTTC | 2 cut(s) | 158, 309 |
| HpyCH4III | ACNGT | 2 cut(s) | 440, 566 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 3 cut(s) | 432, 486, 641 |
| HpyF3I | CTNAG | 3 cut(s) | 67, 264, 290 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 6 cut(s) | 370, 436, 479, 507, 593, 645 |
| HspAI | GCGC | 2 cut(s) | 168, 190 |
| KasI | GGCGCC | 1 cut(s) | 189 |
| KpnI | GGTACC | 1 cut(s) | 9 |
| Kzo9I | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| LguI | GCTCTTC | 1 cut(s) | 586 |
| LmnI | GCTCC | 5 cut(s) | 256, 264, 354, 410, 505 |
| LweI | GCATC | 2 cut(s) | 535, 615 |
| MaeI | CTAG | 1 cut(s) | 736 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 1 cut(s) | 325 |
| MalI | GATC | 7 cut(s) | 72, 85, 96, 269, 322, 333, 453 |
| MboI | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| MboII | GAAGA | 8 cut(s) | 52, 55, 121, 124, 209, 212, 478, 573 |
| MflI | RGATCY | 4 cut(s) | 70, 83, 331, 451 |
| MhlI | GDGCHC | 2 cut(s) | 261, 502 |
| MlsI | TGGCCA | 1 cut(s) | 105 |
| MluCI | AATT | 3 cut(s) | 282, 387, 520 |
| MluNI | TGGCCA | 1 cut(s) | 105 |
| Mly113I | GGCGCC | 1 cut(s) | 190 |
| MlyI | GAGTC | 2 cut(s) | 260, 288 |
| MmeI | TCCRAC | 3 cut(s) | 222, 234, 435 |
| Mox20I | TGGCCA | 1 cut(s) | 105 |
| MscI | TGGCCA | 1 cut(s) | 105 |
| MseI | TTAA | 5 cut(s) | 386, 390, 519, 555, 663 |
| Msp20I | TGGCCA | 1 cut(s) | 105 |
| MspI | CCGG | 1 cut(s) | 730 |
| MspR9I | CCNGG | 2 cut(s) | 194, 731 |
| MvaI | CCWGG | 1 cut(s) | 194 |
| NarI | GGCGCC | 1 cut(s) | 190 |
| NciI | CCSGG | 1 cut(s) | 731 |
| NcoI | CCATGG | 1 cut(s) | 503 |
| NdeII | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| NlaIII | CATG | 6 cut(s) | 370, 436, 479, 507, 593, 645 |
| NlaIV | GGNNCC | 5 cut(s) | 7, 85, 191, 501, 728 |
| NspI | RCATGY | 2 cut(s) | 436, 645 |
| PacI | TTAATTAA | 1 cut(s) | 390 |
| PaeR7I | CTCGAG | 1 cut(s) | 296 |
| PciSI | GCTCTTC | 1 cut(s) | 586 |
| PfeI | GAWTC | 2 cut(s) | 43, 158 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 539 |
| PfoI | TCCNGGA | 1 cut(s) | 729 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PleI | GAGTC | 2 cut(s) | 259, 288 |
| PluTI | GGCGCC | 1 cut(s) | 193 |
| PpsI | GAGTC | 2 cut(s) | 259, 288 |
| PpuMI | RGGWCCY | 1 cut(s) | 55 |
| PshBI | ATTAAT | 1 cut(s) | 386 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| Psp5II | RGGWCCY | 1 cut(s) | 55 |
| Psp6I | CCWGG | 1 cut(s) | 192 |
| PspGI | CCWGG | 1 cut(s) | 192 |
| PspN4I | GGNNCC | 5 cut(s) | 7, 85, 191, 501, 728 |
| PspPI | GGNCC | 4 cut(s) | 20, 55, 360, 727 |
| PspPPI | RGGWCCY | 1 cut(s) | 55 |
| PspXI | VCTCGAGB | 1 cut(s) | 296 |
| PsuI | RGATCY | 4 cut(s) | 70, 83, 331, 451 |
| RsaI | GTAC | 3 cut(s) | 7, 50, 437 |
| RsaNI | GTAC | 3 cut(s) | 6, 49, 436 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SapI | GCTCTTC | 1 cut(s) | 586 |
| SaqAI | TTAA | 5 cut(s) | 386, 390, 519, 555, 663 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau3AI | GATC | 7 cut(s) | 70, 83, 94, 267, 320, 331, 451 |
| Sau96I | GGNCC | 4 cut(s) | 20, 55, 360, 727 |
| SchI | GAGTC | 2 cut(s) | 260, 288 |
| ScrFI | CCNGG | 2 cut(s) | 194, 731 |
| SduI | GDGCHC | 2 cut(s) | 261, 502 |
| SfaNI | GCATC | 2 cut(s) | 535, 615 |
| SfoI | GGCGCC | 1 cut(s) | 191 |
| Sfr274I | CTCGAG | 1 cut(s) | 296 |
| SinI | GGWCC | 3 cut(s) | 20, 55, 727 |
| SlaI | CTCGAG | 1 cut(s) | 296 |
| SmlI | CTYRAG | 2 cut(s) | 296, 344 |
| SmoI | CTYRAG | 2 cut(s) | 296, 344 |
| Sse9I | AATT | 3 cut(s) | 282, 387, 520 |
| SsiI | CCGC | 5 cut(s) | 9, 12, 277, 309, 593 |
| SspDI | GGCGCC | 1 cut(s) | 189 |
| SspI | AATATT | 1 cut(s) | 667 |
| SspMI | CTAG | 1 cut(s) | 736 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StyD4I | CCNGG | 2 cut(s) | 192, 729 |
| StyI | CCWWGG | 2 cut(s) | 503, 671 |
| TaaI | ACNGT | 2 cut(s) | 440, 566 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TaqI | TCGA | 3 cut(s) | 233, 297, 513 |
| TasI | AATT | 3 cut(s) | 282, 387, 520 |
| TatI | WGTACW | 1 cut(s) | 435 |
| TauI | GCSGC | 1 cut(s) | 14 |
| TfiI | GAWTC | 2 cut(s) | 43, 158 |
| Tru1I | TTAA | 5 cut(s) | 386, 390, 519, 555, 663 |
| Tru9I | TTAA | 5 cut(s) | 386, 390, 519, 555, 663 |
| TscAI | CASTG | 3 cut(s) | 565, 571, 690 |
| TspDTI | ATGAA | 2 cut(s) | 383, 464 |
| TspGWI | ACGGA | 1 cut(s) | 344 |
| TspRI | CASTG | 3 cut(s) | 565, 571, 690 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 539 |
| VpaK11BI | GGWCC | 3 cut(s) | 20, 55, 727 |
| VspI | ATTAAT | 1 cut(s) | 386 |
| XceI | RCATGY | 2 cut(s) | 436, 645 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 540 |
| XhoI | CTCGAG | 1 cut(s) | 296 |
| XspI | CTAG | 1 cut(s) | 736 |