Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 23 |
| AccBSI | CCGCTC | 2 cut(s) | 190, 253 |
| AciI | CCGC | 5 cut(s) | 13, 44, 90, 188, 253 |
| AclWI | GGATC | 1 cut(s) | 437 |
| AcoI | YGGCCR | 1 cut(s) | 303 |
| AcuI | CTGAAG | 1 cut(s) | 227 |
| AdeI | CACNNNGTG | 1 cut(s) | 155 |
| AfaI | GTAC | 1 cut(s) | 146 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 272 |
| AgsI | TTSAA | 3 cut(s) | 58, 76, 464 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 333 |
| AjnI | CCWGG | 1 cut(s) | 39 |
| AluBI | AGCT | 4 cut(s) | 164, 239, 424, 460 |
| AluI | AGCT | 4 cut(s) | 164, 239, 424, 460 |
| Alw21I | GWGCWC | 1 cut(s) | 143 |
| Alw26I | GTCTC | 2 cut(s) | 173, 347 |
| Alw44I | GTGCAC | 1 cut(s) | 139 |
| AlwI | GGATC | 1 cut(s) | 437 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 424 |
| Ama87I | CYCGRG | 1 cut(s) | 271 |
| AoxI | GGCC | 1 cut(s) | 303 |
| ApaLI | GTGCAC | 1 cut(s) | 139 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 344 |
| AspLEI | GCGC | 1 cut(s) | 370 |
| AspS9I | GGNCC | 1 cut(s) | 335 |
| AsuC2I | CCSGG | 2 cut(s) | 272, 273 |
| AvaI | CYCGRG | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 335 |
| BaeGI | GKGCMC | 1 cut(s) | 143 |
| BalI | TGGCCA | 1 cut(s) | 305 |
| Bbv12I | GWGCWC | 1 cut(s) | 143 |
| BccI | CCATC | 1 cut(s) | 189 |
| BciT130I | CCWGG | 1 cut(s) | 41 |
| BcnI | CCSGG | 2 cut(s) | 272, 273 |
| BcoDI | GTCTC | 2 cut(s) | 173, 347 |
| BfaI | CTAG | 1 cut(s) | 152 |
| BfuAI | ACCTGC | 1 cut(s) | 23 |
| BisI | GCNGC | 4 cut(s) | 45, 91, 188, 254 |
| BlsI | GCNGC | 4 cut(s) | 46, 92, 189, 255 |
| Bme1390I | CCNGG | 3 cut(s) | 41, 272, 273 |
| Bme18I | GGWCC | 1 cut(s) | 335 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 333 |
| BmeT110I | CYCGRG | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 335 |
| BmrFI | CCNGG | 3 cut(s) | 41, 272, 273 |
| BmsI | GCATC | 2 cut(s) | 77, 355 |
| BpuEI | CTTGAG | 1 cut(s) | 12 |
| BpuMI | CCSGG | 2 cut(s) | 272, 273 |
| BsaAI | YACGTR | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 3 cut(s) | 219, 271, 306 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 272 |
| Bse3DI | GCAATG | 1 cut(s) | 294 |
| BseBI | CCWGG | 1 cut(s) | 41 |
| BseDI | CCNNGG | 3 cut(s) | 219, 271, 306 |
| BseGI | GGATG | 3 cut(s) | 92, 200, 441 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 272 |
| BseMI | GCAATG | 1 cut(s) | 294 |
| BseMII | CTCAG | 1 cut(s) | 431 |
| BseRI | GAGGAG | 1 cut(s) | 239 |
| BseSI | GKGCMC | 1 cut(s) | 143 |
| BshFI | GGCC | 1 cut(s) | 305 |
| BsiHKAI | GWGCWC | 1 cut(s) | 143 |
| BsiHKCI | CYCGRG | 1 cut(s) | 271 |
| BsiSI | CCGG | 1 cut(s) | 272 |
| BslFI | GGGAC | 1 cut(s) | 201 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 272 |
| BsmAI | GTCTC | 2 cut(s) | 173, 347 |
| BsmBI | CGTCTC | 1 cut(s) | 347 |
| BsmFI | GGGAC | 1 cut(s) | 201 |
| BsmI | GAATGC | 1 cut(s) | 64 |
| BsnI | GGCC | 1 cut(s) | 305 |
| BsoBI | CYCGRG | 1 cut(s) | 271 |
| Bsp1286I | GDGCHC | 1 cut(s) | 143 |
| Bsp143I | GATC | 1 cut(s) | 429 |
| BspACI | CCGC | 5 cut(s) | 13, 44, 90, 188, 253 |
| BspANI | GGCC | 1 cut(s) | 305 |
| BspCNI | CTCAG | 1 cut(s) | 430 |
| BspMI | ACCTGC | 1 cut(s) | 23 |
| BspPI | GGATC | 1 cut(s) | 437 |
| BsrBI | CCGCTC | 2 cut(s) | 190, 253 |
| BsrDI | GCAATG | 1 cut(s) | 294 |
| BssECI | CCNNGG | 3 cut(s) | 219, 271, 306 |
| BssMI | GATC | 1 cut(s) | 429 |
| BssT1I | CCWWGG | 2 cut(s) | 219, 306 |
| Bst2UI | CCWGG | 1 cut(s) | 41 |
| Bst4CI | ACNGT | 1 cut(s) | 138 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstBAI | YACGTR | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 1 cut(s) | 24 |
| BstDEI | CTNAG | 1 cut(s) | 417 |
| BstEII | GGTNACC | 1 cut(s) | 35 |
| BstF5I | GGATG | 3 cut(s) | 92, 200, 441 |
| BstHHI | GCGC | 1 cut(s) | 370 |
| BstKTI | GATC | 1 cut(s) | 432 |
| BstMAI | GTCTC | 2 cut(s) | 173, 347 |
| BstMBI | GATC | 1 cut(s) | 429 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 19 |
| BstNI | CCWGG | 1 cut(s) | 41 |
| BstPI | GGTNACC | 1 cut(s) | 35 |
| BstSCI | CCNGG | 3 cut(s) | 39, 270, 271 |
| BstSLI | GKGCMC | 1 cut(s) | 143 |
| BsuRI | GGCC | 1 cut(s) | 305 |
| BtgZI | GCGATG | 1 cut(s) | 168 |
| BtsCI | GGATG | 3 cut(s) | 92, 200, 441 |
| BtsIMutI | CAGTG | 1 cut(s) | 203 |
| BveI | ACCTGC | 1 cut(s) | 23 |
| Cac8I | GCNNGC | 1 cut(s) | 24 |
| CaiI | CAGNNNCTG | 1 cut(s) | 424 |
| CfoI | GCGC | 1 cut(s) | 370 |
| Cfr13I | GGNCC | 1 cut(s) | 335 |
| Cfr9I | CCCGGG | 1 cut(s) | 271 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviQI | GTAC | 1 cut(s) | 145 |
| DdeI | CTNAG | 1 cut(s) | 417 |
| DpnI | GATC | 1 cut(s) | 431 |
| DpnII | GATC | 1 cut(s) | 429 |
| DraIII | CACNNNGTG | 1 cut(s) | 155 |
| DriI | GACNNNNNGTC | 1 cut(s) | 333 |
| EaeI | YGGCCR | 1 cut(s) | 303 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 333 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 2 cut(s) | 219, 306 |
| Eco47I | GGWCC | 1 cut(s) | 335 |
| Eco57I | CTGAAG | 1 cut(s) | 227 |
| Eco88I | CYCGRG | 1 cut(s) | 271 |
| Eco91I | GGTNACC | 1 cut(s) | 35 |
| EcoO65I | GGTNACC | 1 cut(s) | 35 |
| EcoRII | CCWGG | 1 cut(s) | 39 |
| EcoT14I | CCWWGG | 2 cut(s) | 219, 306 |
| ErhI | CCWWGG | 2 cut(s) | 219, 306 |
| Esp3I | CGTCTC | 1 cut(s) | 347 |
| FaiI | YATR | 3 cut(s) | 249, 268, 317 |
| FaqI | GGGAC | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 4 cut(s) | 45, 91, 188, 254 |
| FokI | GGATG | 3 cut(s) | 99, 207, 448 |
| Fsp4HI | GCNGC | 4 cut(s) | 45, 91, 188, 254 |
| FspBI | CTAG | 1 cut(s) | 152 |
| GlaI | GCGC | 1 cut(s) | 369 |
| GluI | GCNGC | 4 cut(s) | 45, 91, 188, 254 |
| HaeIII | GGCC | 1 cut(s) | 305 |
| HapII | CCGG | 1 cut(s) | 272 |
| HhaI | GCGC | 1 cut(s) | 370 |
| Hin6I | GCGC | 1 cut(s) | 368 |
| HinP1I | GCGC | 1 cut(s) | 368 |
| HpaII | CCGG | 1 cut(s) | 272 |
| Hpy166II | GTNNAC | 3 cut(s) | 141, 147, 201 |
| Hpy188I | TCNGA | 5 cut(s) | 194, 339, 381, 420, 457 |
| Hpy188III | TCNNGA | 4 cut(s) | 73, 112, 433, 464 |
| Hpy8I | GTNNAC | 3 cut(s) | 141, 147, 201 |
| HpyAV | CCTTC | 2 cut(s) | 376, 463 |
| HpyCH4III | ACNGT | 1 cut(s) | 138 |
| HpyCH4IV | ACGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 2 cut(s) | 141, 391 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 19 |
| HpyF3I | CTNAG | 1 cut(s) | 417 |
| HpySE526I | ACGT | 1 cut(s) | 143 |
| HspAI | GCGC | 1 cut(s) | 368 |
| Kzo9I | GATC | 1 cut(s) | 429 |
| LmnI | GCTCC | 1 cut(s) | 457 |
| LpnPI | CCDG | 9 cut(s) | 8, 18, 26, 53, 77, 97, 285, 395, 418 |
| LweI | GCATC | 2 cut(s) | 77, 355 |
| MaeI | CTAG | 1 cut(s) | 152 |
| MaeII | ACGT | 1 cut(s) | 143 |
| MaeIII | GTNAC | 1 cut(s) | 35 |
| MalI | GATC | 1 cut(s) | 431 |
| MbiI | CCGCTC | 2 cut(s) | 190, 253 |
| MboI | GATC | 1 cut(s) | 429 |
| MboII | GAAGA | 3 cut(s) | 88, 293, 305 |
| MfeI | CAATTG | 1 cut(s) | 330 |
| MhlI | GDGCHC | 1 cut(s) | 143 |
| MlsI | TGGCCA | 1 cut(s) | 305 |
| MluCI | AATT | 1 cut(s) | 330 |
| MluNI | TGGCCA | 1 cut(s) | 305 |
| MnlI | CCTC | 8 cut(s) | 91, 217, 222, 222, 305, 406, 432, 439 |
| Mox20I | TGGCCA | 1 cut(s) | 305 |
| MroXI | GAANNNNTTC | 1 cut(s) | 344 |
| MscI | TGGCCA | 1 cut(s) | 305 |
| MslI | CAYNNNNRTG | 1 cut(s) | 246 |
| Msp20I | TGGCCA | 1 cut(s) | 305 |
| MspI | CCGG | 1 cut(s) | 272 |
| MspR9I | CCNGG | 3 cut(s) | 41, 272, 273 |
| MunI | CAATTG | 1 cut(s) | 330 |
| Mva1269I | GAATGC | 1 cut(s) | 64 |
| MvaI | CCWGG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 19 |
| NciI | CCSGG | 2 cut(s) | 272, 273 |
| NdeII | GATC | 1 cut(s) | 429 |
| PctI | GAATGC | 1 cut(s) | 64 |
| PdmI | GAANNNNTTC | 1 cut(s) | 344 |
| PkrI | GCNGC | 4 cut(s) | 46, 92, 189, 255 |
| Ppu21I | YACGTR | 1 cut(s) | 144 |
| Psp6I | CCWGG | 1 cut(s) | 39 |
| PspEI | GGTNACC | 1 cut(s) | 35 |
| PspGI | CCWGG | 1 cut(s) | 39 |
| PspPI | GGNCC | 1 cut(s) | 335 |
| PstNI | CAGNNNCTG | 1 cut(s) | 424 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 246 |
| SatI | GCNGC | 4 cut(s) | 45, 91, 188, 254 |
| Sau3AI | GATC | 1 cut(s) | 429 |
| Sau96I | GGNCC | 1 cut(s) | 335 |
| ScrFI | CCNGG | 3 cut(s) | 41, 272, 273 |
| SduI | GDGCHC | 1 cut(s) | 143 |
| SetI | ASST | 9 cut(s) | 37, 146, 157, 166, 241, 316, 426, 450, 462 |
| SfaNI | GCATC | 2 cut(s) | 77, 355 |
| SinI | GGWCC | 1 cut(s) | 335 |
| SmaI | CCCGGG | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 246 |
| SmlI | CTYRAG | 1 cut(s) | 27 |
| SmoI | CTYRAG | 1 cut(s) | 27 |
| Sse9I | AATT | 1 cut(s) | 330 |
| SsiI | CCGC | 5 cut(s) | 13, 44, 90, 188, 253 |
| SspMI | CTAG | 1 cut(s) | 152 |
| StyD4I | CCNGG | 3 cut(s) | 39, 270, 271 |
| StyI | CCWWGG | 2 cut(s) | 219, 306 |
| TaaI | ACNGT | 1 cut(s) | 138 |
| TaiI | ACGT | 1 cut(s) | 146 |
| TasI | AATT | 1 cut(s) | 330 |
| TauI | GCSGC | 4 cut(s) | 47, 93, 190, 256 |
| TscAI | CASTG | 1 cut(s) | 210 |
| TspDTI | ATGAA | 2 cut(s) | 294, 337 |
| TspGWI | ACGGA | 1 cut(s) | 371 |
| TspMI | CCCGGG | 1 cut(s) | 271 |
| TspRI | CASTG | 1 cut(s) | 210 |
| VneI | GTGCAC | 1 cut(s) | 139 |
| VpaK11BI | GGWCC | 1 cut(s) | 335 |
| XmaI | CCCGGG | 1 cut(s) | 271 |
| XmnI | GAANNNNTTC | 1 cut(s) | 344 |
| XspI | CTAG | 1 cut(s) | 152 |