Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 326 - 408 | 1.3e-19 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1310 |
| AccB1I | GGYRCC | 1 cut(s) | 1310 |
| AccI | GTMKAC | 1 cut(s) | 953 |
| AccII | CGCG | 2 cut(s) | 133, 1060 |
| AciI | CCGC | 1 cut(s) | 1058 |
| AclWI | GGATC | 2 cut(s) | 703, 1035 |
| AcoI | YGGCCR | 2 cut(s) | 371, 623 |
| AcsI | RAATTY | 3 cut(s) | 70, 412, 1218 |
| AcuI | CTGAAG | 1 cut(s) | 189 |
| AfaI | GTAC | 1 cut(s) | 1312 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 654 |
| AgsI | TTSAA | 9 cut(s) | 56, 239, 544, 596, 918, 960, 1022, 1253, 1265 |
| AjnI | CCWGG | 1 cut(s) | 152 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 403, 435, 483, 515 |
| AluBI | AGCT | 4 cut(s) | 178, 521, 812, 1278 |
| AluI | AGCT | 4 cut(s) | 178, 521, 812, 1278 |
| Alw21I | GWGCWC | 2 cut(s) | 1154, 1205 |
| Alw26I | GTCTC | 2 cut(s) | 169, 351 |
| AlwI | GGATC | 2 cut(s) | 703, 1035 |
| AoxI | GGCC | 4 cut(s) | 371, 531, 623, 656 |
| ApeKI | GCWGC | 2 cut(s) | 27, 1120 |
| ApoI | RAATTY | 3 cut(s) | 70, 412, 1218 |
| AseI | ATTAAT | 1 cut(s) | 729 |
| Asp718I | GGTACC | 1 cut(s) | 1310 |
| AspLEI | GCGC | 2 cut(s) | 27, 133 |
| AsuHPI | GGTGA | 4 cut(s) | 29, 185, 718, 977 |
| BaeGI | GKGCMC | 1 cut(s) | 882 |
| BalI | TGGCCA | 1 cut(s) | 373 |
| BanI | GGYRCC | 1 cut(s) | 1310 |
| BbsI | GAAGAC | 1 cut(s) | 1218 |
| Bbv12I | GWGCWC | 2 cut(s) | 1154, 1205 |
| BbvI | GCAGC | 2 cut(s) | 39, 1132 |
| BccI | CCATC | 4 cut(s) | 418, 741, 830, 1026 |
| BceAI | ACGGC | 2 cut(s) | 610, 638 |
| BciT130I | CCWGG | 1 cut(s) | 154 |
| BcoDI | GTCTC | 2 cut(s) | 169, 351 |
| BfaI | CTAG | 1 cut(s) | 875 |
| BfmI | CTRYAG | 1 cut(s) | 1137 |
| BisI | GCNGC | 2 cut(s) | 28, 1121 |
| BlsI | GCNGC | 2 cut(s) | 29, 1122 |
| Bme1390I | CCNGG | 1 cut(s) | 154 |
| BmiI | GGNNCC | 2 cut(s) | 201, 1312 |
| BmrFI | CCNGG | 1 cut(s) | 154 |
| BmsI | GCATC | 1 cut(s) | 1151 |
| BpiI | GAAGAC | 1 cut(s) | 1218 |
| Bsa29I | ATCGAT | 1 cut(s) | 1030 |
| BsaAI | YACGTR | 1 cut(s) | 1214 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 654 |
| Bse1I | ACTGG | 1 cut(s) | 1013 |
| BseBI | CCWGG | 1 cut(s) | 154 |
| BseCI | ATCGAT | 1 cut(s) | 1030 |
| BseGI | GGATG | 3 cut(s) | 429, 841, 895 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 654 |
| BseNI | ACTGG | 1 cut(s) | 1013 |
| BseSI | GKGCMC | 1 cut(s) | 882 |
| BseX3I | CGGCCG | 1 cut(s) | 623 |
| BseXI | GCAGC | 2 cut(s) | 39, 1132 |
| Bsh1236I | CGCG | 2 cut(s) | 133, 1060 |
| Bsh1285I | CGRYCG | 1 cut(s) | 626 |
| BshFI | GGCC | 4 cut(s) | 373, 533, 625, 658 |
| BshNI | GGYRCC | 1 cut(s) | 1310 |
| BshVI | ATCGAT | 1 cut(s) | 1030 |
| BsiEI | CGRYCG | 1 cut(s) | 626 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1154, 1205 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 654 |
| BsmAI | GTCTC | 2 cut(s) | 169, 351 |
| BsmI | GAATGC | 1 cut(s) | 504 |
| BsnI | GGCC | 4 cut(s) | 373, 533, 625, 658 |
| Bsp1286I | GDGCHC | 3 cut(s) | 882, 1154, 1205 |
| Bsp143I | GATC | 3 cut(s) | 695, 1027, 1111 |
| BspACI | CCGC | 1 cut(s) | 1058 |
| BspANI | GGCC | 4 cut(s) | 373, 533, 625, 658 |
| BspDI | ATCGAT | 1 cut(s) | 1030 |
| BspFNI | CGCG | 2 cut(s) | 133, 1060 |
| BspLI | GGNNCC | 2 cut(s) | 201, 1312 |
| BspPI | GGATC | 2 cut(s) | 703, 1035 |
| BspT107I | GGYRCC | 1 cut(s) | 1310 |
| BsrI | ACTGG | 1 cut(s) | 1013 |
| BssMI | GATC | 3 cut(s) | 695, 1027, 1111 |
| Bst2UI | CCWGG | 1 cut(s) | 154 |
| Bst4CI | ACNGT | 1 cut(s) | 588 |
| BstBAI | YACGTR | 1 cut(s) | 1214 |
| BstC8I | GCNNGC | 1 cut(s) | 1058 |
| BstDEI | CTNAG | 1 cut(s) | 222 |
| BstEII | GGTNACC | 2 cut(s) | 565, 965 |
| BstF5I | GGATG | 3 cut(s) | 429, 841, 895 |
| BstFNI | CGCG | 2 cut(s) | 133, 1060 |
| BstHHI | GCGC | 2 cut(s) | 27, 133 |
| BstKTI | GATC | 3 cut(s) | 698, 1030, 1114 |
| BstMAI | GTCTC | 2 cut(s) | 169, 351 |
| BstMBI | GATC | 3 cut(s) | 695, 1027, 1111 |
| BstMCI | CGRYCG | 1 cut(s) | 626 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 139, 809 |
| BstNI | CCWGG | 1 cut(s) | 154 |
| BstNSI | RCATGY | 2 cut(s) | 343, 743 |
| BstPI | GGTNACC | 2 cut(s) | 565, 965 |
| BstSCI | CCNGG | 1 cut(s) | 152 |
| BstSFI | CTRYAG | 1 cut(s) | 1137 |
| BstSLI | GKGCMC | 1 cut(s) | 882 |
| BstUI | CGCG | 2 cut(s) | 133, 1060 |
| BstV1I | GCAGC | 2 cut(s) | 39, 1132 |
| BstV2I | GAAGAC | 1 cut(s) | 1218 |
| BstZI | CGGCCG | 1 cut(s) | 623 |
| Bsu15I | ATCGAT | 1 cut(s) | 1030 |
| BsuRI | GGCC | 4 cut(s) | 373, 533, 625, 658 |
| BsuTUI | ATCGAT | 1 cut(s) | 1030 |
| BtsCI | GGATG | 3 cut(s) | 429, 841, 895 |
| BtsIMutI | CAGTG | 1 cut(s) | 1020 |
| Cac8I | GCNNGC | 1 cut(s) | 1058 |
| CfoI | GCGC | 2 cut(s) | 27, 133 |
| ClaI | ATCGAT | 1 cut(s) | 1030 |
| CseI | GACGC | 1 cut(s) | 122 |
| Csp6I | GTAC | 1 cut(s) | 1311 |
| CviAII | CATG | 5 cut(s) | 340, 462, 740, 870, 1091 |
| CviQI | GTAC | 1 cut(s) | 1311 |
| DdeI | CTNAG | 1 cut(s) | 222 |
| DpnI | GATC | 3 cut(s) | 697, 1029, 1113 |
| DpnII | GATC | 3 cut(s) | 695, 1027, 1111 |
| DraI | TTTAAA | 3 cut(s) | 211, 525, 997 |
| EaeI | YGGCCR | 2 cut(s) | 371, 623 |
| EagI | CGGCCG | 1 cut(s) | 623 |
| EclXI | CGGCCG | 1 cut(s) | 623 |
| Eco147I | AGGCCT | 1 cut(s) | 533 |
| Eco52I | CGGCCG | 1 cut(s) | 623 |
| Eco57I | CTGAAG | 1 cut(s) | 189 |
| Eco91I | GGTNACC | 2 cut(s) | 565, 965 |
| EcoO65I | GGTNACC | 2 cut(s) | 565, 965 |
| EcoRI | GAATTC | 1 cut(s) | 70 |
| EcoRII | CCWGG | 1 cut(s) | 152 |
| EcoT22I | ATGCAT | 1 cut(s) | 48 |
| FaeI | CATG | 5 cut(s) | 343, 465, 743, 873, 1094 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 162, 194, 483, 515 |
| FatI | CATG | 5 cut(s) | 339, 461, 739, 869, 1090 |
| FauI | CCCGC | 1 cut(s) | 1065 |
| FblI | GTMKAC | 1 cut(s) | 953 |
| Fnu4HI | GCNGC | 2 cut(s) | 28, 1121 |
| FokI | GGATG | 3 cut(s) | 436, 848, 902 |
| Fsp4HI | GCNGC | 2 cut(s) | 28, 1121 |
| FspBI | CTAG | 1 cut(s) | 875 |
| GlaI | GCGC | 2 cut(s) | 26, 132 |
| GluI | GCNGC | 2 cut(s) | 28, 1121 |
| HaeIII | GGCC | 4 cut(s) | 373, 533, 625, 658 |
| HgaI | GACGC | 1 cut(s) | 122 |
| HhaI | GCGC | 2 cut(s) | 27, 133 |
| Hin1II | CATG | 5 cut(s) | 343, 465, 743, 873, 1094 |
| Hin6I | GCGC | 2 cut(s) | 25, 131 |
| HinP1I | GCGC | 2 cut(s) | 25, 131 |
| HincII | GTYRAC | 1 cut(s) | 1104 |
| HindII | GTYRAC | 1 cut(s) | 1104 |
| HinfI | GANTC | 3 cut(s) | 406, 437, 847 |
| HpaI | GTTAAC | 1 cut(s) | 1104 |
| HphI | GGTGA | 4 cut(s) | 29, 185, 718, 977 |
| Hpy166II | GTNNAC | 3 cut(s) | 665, 954, 1104 |
| Hpy188I | TCNGA | 4 cut(s) | 169, 682, 823, 1247 |
| Hpy188III | TCNNGA | 1 cut(s) | 1265 |
| Hpy8I | GTNNAC | 3 cut(s) | 665, 954, 1104 |
| Hpy99I | CGWCG | 1 cut(s) | 138 |
| HpyAV | CCTTC | 4 cut(s) | 164, 485, 924, 1160 |
| HpyCH4III | ACNGT | 1 cut(s) | 588 |
| HpyCH4IV | ACGT | 3 cut(s) | 259, 1000, 1213 |
| HpyCH4V | TGCA | 4 cut(s) | 12, 46, 1120, 1211 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 139, 809 |
| HpyF3I | CTNAG | 1 cut(s) | 222 |
| HpySE526I | ACGT | 3 cut(s) | 259, 1000, 1213 |
| Hsp92II | CATG | 5 cut(s) | 343, 465, 743, 873, 1094 |
| HspAI | GCGC | 2 cut(s) | 25, 131 |
| KpnI | GGTACC | 1 cut(s) | 1314 |
| KspAI | GTTAAC | 1 cut(s) | 1104 |
| Kzo9I | GATC | 3 cut(s) | 695, 1027, 1111 |
| LpnPI | CCDG | 6 cut(s) | 139, 166, 288, 377, 801, 1026 |
| Lsp1109I | GCAGC | 2 cut(s) | 39, 1132 |
| LweI | GCATC | 1 cut(s) | 1151 |
| MaeI | CTAG | 1 cut(s) | 875 |
| MaeII | ACGT | 3 cut(s) | 259, 1000, 1213 |
| MaeIII | GTNAC | 6 cut(s) | 17, 284, 310, 565, 965, 1069 |
| MalI | GATC | 3 cut(s) | 697, 1029, 1113 |
| MboI | GATC | 3 cut(s) | 695, 1027, 1111 |
| MboII | GAAGA | 3 cut(s) | 68, 891, 1218 |
| MhlI | GDGCHC | 3 cut(s) | 882, 1154, 1205 |
| MlsI | TGGCCA | 1 cut(s) | 373 |
| MluCI | AATT | 9 cut(s) | 70, 119, 412, 511, 610, 730, 1063, 1218, 1238 |
| MluNI | TGGCCA | 1 cut(s) | 373 |
| MlyI | GAGTC | 1 cut(s) | 400 |
| MmeI | TCCRAC | 2 cut(s) | 383, 824 |
| MnlI | CCTC | 6 cut(s) | 219, 488, 580, 658, 681, 1121 |
| Mox20I | TGGCCA | 1 cut(s) | 373 |
| Mph1103I | ATGCAT | 1 cut(s) | 48 |
| MscI | TGGCCA | 1 cut(s) | 373 |
| MseI | TTAA | 8 cut(s) | 210, 386, 485, 524, 609, 729, 996, 1103 |
| MslI | CAYNNNNRTG | 2 cut(s) | 422, 1147 |
| Msp20I | TGGCCA | 1 cut(s) | 373 |
| MspR9I | CCNGG | 1 cut(s) | 154 |
| Mva1269I | GAATGC | 1 cut(s) | 504 |
| MvaI | CCWGG | 1 cut(s) | 154 |
| MvnI | CGCG | 2 cut(s) | 133, 1060 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 139, 809 |
| NdeII | GATC | 3 cut(s) | 695, 1027, 1111 |
| NlaIII | CATG | 5 cut(s) | 343, 465, 743, 873, 1094 |
| NlaIV | GGNNCC | 2 cut(s) | 201, 1312 |
| NmuCI | GTSAC | 3 cut(s) | 17, 284, 965 |
| NsiI | ATGCAT | 1 cut(s) | 48 |
| NspI | RCATGY | 2 cut(s) | 343, 743 |
| PceI | AGGCCT | 1 cut(s) | 533 |
| PctI | GAATGC | 1 cut(s) | 504 |
| PfeI | GAWTC | 2 cut(s) | 437, 847 |
| PkrI | GCNGC | 2 cut(s) | 29, 1122 |
| PleI | GAGTC | 1 cut(s) | 400 |
| PpsI | GAGTC | 1 cut(s) | 400 |
| Ppu21I | YACGTR | 1 cut(s) | 1214 |
| PshBI | ATTAAT | 1 cut(s) | 729 |
| Psp6I | CCWGG | 1 cut(s) | 152 |
| PspEI | GGTNACC | 2 cut(s) | 565, 965 |
| PspGI | CCWGG | 1 cut(s) | 152 |
| PspN4I | GGNNCC | 2 cut(s) | 201, 1312 |
| RsaI | GTAC | 1 cut(s) | 1312 |
| RsaNI | GTAC | 1 cut(s) | 1311 |
| RseI | CAYNNNNRTG | 2 cut(s) | 422, 1147 |
| SaqAI | TTAA | 8 cut(s) | 210, 386, 485, 524, 609, 729, 996, 1103 |
| SatI | GCNGC | 2 cut(s) | 28, 1121 |
| Sau3AI | GATC | 3 cut(s) | 695, 1027, 1111 |
| SchI | GAGTC | 1 cut(s) | 400 |
| ScrFI | CCNGG | 1 cut(s) | 154 |
| SduI | GDGCHC | 3 cut(s) | 882, 1154, 1205 |
| SfaNI | GCATC | 1 cut(s) | 1151 |
| SfcI | CTRYAG | 1 cut(s) | 1137 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 422, 1147 |
| Sse9I | AATT | 9 cut(s) | 70, 119, 412, 511, 610, 730, 1063, 1218, 1238 |
| SseBI | AGGCCT | 1 cut(s) | 533 |
| SsiI | CCGC | 1 cut(s) | 1058 |
| SspI | AATATT | 2 cut(s) | 727, 1256 |
| SspMI | CTAG | 1 cut(s) | 875 |
| StuI | AGGCCT | 1 cut(s) | 533 |
| StyD4I | CCNGG | 1 cut(s) | 152 |
| TaaI | ACNGT | 1 cut(s) | 588 |
| TaiI | ACGT | 3 cut(s) | 262, 1003, 1216 |
| TaqI | TCGA | 5 cut(s) | 307, 409, 698, 808, 1030 |
| TasI | AATT | 9 cut(s) | 70, 119, 412, 511, 610, 730, 1063, 1218, 1238 |
| TfiI | GAWTC | 2 cut(s) | 437, 847 |
| Tru1I | TTAA | 8 cut(s) | 210, 386, 485, 524, 609, 729, 996, 1103 |
| Tru9I | TTAA | 8 cut(s) | 210, 386, 485, 524, 609, 729, 996, 1103 |
| TscAI | CASTG | 1 cut(s) | 1020 |
| TseFI | GTSAC | 3 cut(s) | 17, 284, 965 |
| TseI | GCWGC | 2 cut(s) | 27, 1120 |
| Tsp45I | GTSAC | 3 cut(s) | 17, 284, 965 |
| TspDTI | ATGAA | 5 cut(s) | 50, 406, 504, 858, 1274 |
| TspRI | CASTG | 1 cut(s) | 1020 |
| VspI | ATTAAT | 1 cut(s) | 729 |
| XapI | RAATTY | 3 cut(s) | 70, 412, 1218 |
| XceI | RCATGY | 2 cut(s) | 343, 743 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1020 |
| XmiI | GTMKAC | 1 cut(s) | 953 |
| XspI | CTAG | 1 cut(s) | 875 |
| Zsp2I | ATGCAT | 1 cut(s) | 48 |