Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 202 |
| AciI | CCGC | 3 cut(s) | 539, 1182, 1230 |
| AcoI | YGGCCR | 2 cut(s) | 172, 329 |
| AcsI | RAATTY | 7 cut(s) | 186, 213, 370, 506, 852, 1037, 1333 |
| AcuI | CTGAAG | 1 cut(s) | 1061 |
| AcyI | GRCGYC | 1 cut(s) | 997 |
| AfaI | GTAC | 4 cut(s) | 20, 97, 149, 1267 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 31, 202, 575 |
| AgsI | TTSAA | 4 cut(s) | 445, 684, 952, 1364 |
| AjnI | CCWGG | 2 cut(s) | 195, 616 |
| AluBI | AGCT | 7 cut(s) | 83, 491, 654, 860, 1054, 1304, 1360 |
| AluI | AGCT | 7 cut(s) | 83, 491, 654, 860, 1054, 1304, 1360 |
| Alw21I | GWGCWC | 4 cut(s) | 439, 1109, 1160, 1348 |
| Alw26I | GTCTC | 3 cut(s) | 63, 234, 1124 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 542 |
| Ama87I | CYCGRG | 1 cut(s) | 31 |
| AoxI | GGCC | 5 cut(s) | 22, 34, 172, 329, 614 |
| ApoI | RAATTY | 7 cut(s) | 186, 213, 370, 506, 852, 1037, 1333 |
| AspS9I | GGNCC | 2 cut(s) | 34, 1179 |
| AsuHPI | GGTGA | 1 cut(s) | 55 |
| AsuII | TTCGAA | 1 cut(s) | 355 |
| AvaI | CYCGRG | 1 cut(s) | 31 |
| AvaII | GGWCC | 1 cut(s) | 1179 |
| BalI | TGGCCA | 1 cut(s) | 331 |
| BbsI | GAAGAC | 1 cut(s) | 387 |
| Bbv12I | GWGCWC | 4 cut(s) | 439, 1109, 1160, 1348 |
| BccI | CCATC | 5 cut(s) | 753, 788, 911, 981, 1291 |
| BceAI | ACGGC | 1 cut(s) | 37 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BciT130I | CCWGG | 2 cut(s) | 197, 618 |
| BcoDI | GTCTC | 3 cut(s) | 63, 234, 1124 |
| BfaI | CTAG | 4 cut(s) | 399, 896, 1329, 1349 |
| BfmI | CTRYAG | 2 cut(s) | 649, 936 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 539 |
| BisI | GCNGC | 1 cut(s) | 540 |
| BlsI | GCNGC | 1 cut(s) | 541 |
| Bme1390I | CCNGG | 2 cut(s) | 197, 618 |
| Bme18I | GGWCC | 1 cut(s) | 1179 |
| BmeT110I | CYCGRG | 1 cut(s) | 31 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 1179 |
| BmrFI | CCNGG | 2 cut(s) | 197, 618 |
| BmsI | GCATC | 2 cut(s) | 1130, 1400 |
| BpiI | GAAGAC | 1 cut(s) | 387 |
| Bpu14I | TTCGAA | 1 cut(s) | 355 |
| BsaHI | GRCGYC | 1 cut(s) | 997 |
| BsaJI | CCNNGG | 4 cut(s) | 151, 255, 332, 977 |
| BsaWI | WCCGGW | 1 cut(s) | 412 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 31, 202, 575 |
| Bse1I | ACTGG | 3 cut(s) | 37, 125, 388 |
| Bse3DI | GCAATG | 2 cut(s) | 394, 679 |
| BseBI | CCWGG | 2 cut(s) | 197, 618 |
| BseDI | CCNNGG | 4 cut(s) | 151, 255, 332, 977 |
| BseGI | GGATG | 3 cut(s) | 369, 409, 1299 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 31, 202, 575 |
| BseMI | GCAATG | 2 cut(s) | 394, 679 |
| BseNI | ACTGG | 3 cut(s) | 37, 125, 388 |
| BseRI | GAGGAG | 2 cut(s) | 29, 970 |
| BseYI | CCCAGC | 1 cut(s) | 535 |
| BshFI | GGCC | 5 cut(s) | 24, 36, 174, 331, 616 |
| BsiHKAI | GWGCWC | 4 cut(s) | 439, 1109, 1160, 1348 |
| BsiHKCI | CYCGRG | 1 cut(s) | 31 |
| BsiSI | CCGG | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 31, 202, 575 |
| BsmAI | GTCTC | 3 cut(s) | 63, 234, 1124 |
| BsmI | GAATGC | 2 cut(s) | 244, 1330 |
| BsnI | GGCC | 5 cut(s) | 24, 36, 174, 331, 616 |
| BsoBI | CYCGRG | 1 cut(s) | 31 |
| Bsp119I | TTCGAA | 1 cut(s) | 355 |
| Bsp1286I | GDGCHC | 4 cut(s) | 439, 1109, 1160, 1348 |
| Bsp143I | GATC | 3 cut(s) | 208, 829, 1066 |
| Bsp19I | CCATGG | 1 cut(s) | 255 |
| BspACI | CCGC | 3 cut(s) | 539, 1182, 1230 |
| BspANI | GGCC | 5 cut(s) | 24, 36, 174, 331, 616 |
| BspT104I | TTCGAA | 1 cut(s) | 355 |
| BsrDI | GCAATG | 2 cut(s) | 394, 679 |
| BsrI | ACTGG | 3 cut(s) | 37, 125, 388 |
| BssECI | CCNNGG | 4 cut(s) | 151, 255, 332, 977 |
| BssMI | GATC | 3 cut(s) | 208, 829, 1066 |
| BssNI | GRCGYC | 1 cut(s) | 997 |
| BssT1I | CCWWGG | 4 cut(s) | 151, 255, 332, 977 |
| Bst2UI | CCWGG | 2 cut(s) | 197, 618 |
| Bst4CI | ACNGT | 1 cut(s) | 340 |
| Bst6I | CTCTTC | 1 cut(s) | 947 |
| BstACI | GRCGYC | 1 cut(s) | 997 |
| BstBI | TTCGAA | 1 cut(s) | 355 |
| BstC8I | GCNNGC | 3 cut(s) | 158, 623, 1306 |
| BstDEI | CTNAG | 1 cut(s) | 525 |
| BstDSI | CCRYGG | 1 cut(s) | 255 |
| BstF5I | GGATG | 3 cut(s) | 369, 409, 1299 |
| BstKTI | GATC | 3 cut(s) | 211, 832, 1069 |
| BstMAI | GTCTC | 3 cut(s) | 63, 234, 1124 |
| BstMBI | GATC | 3 cut(s) | 208, 829, 1066 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 539, 622, 1352 |
| BstNI | CCWGG | 2 cut(s) | 197, 618 |
| BstNSI | RCATGY | 1 cut(s) | 625 |
| BstSCI | CCNGG | 2 cut(s) | 195, 616 |
| BstSFI | CTRYAG | 2 cut(s) | 649, 936 |
| BstV2I | GAAGAC | 1 cut(s) | 387 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 752 |
| BsuRI | GGCC | 5 cut(s) | 24, 36, 174, 331, 616 |
| BtgI | CCRYGG | 1 cut(s) | 255 |
| BtsCI | GGATG | 3 cut(s) | 369, 409, 1299 |
| BtsIMutI | CAGTG | 2 cut(s) | 132, 1007 |
| Cac8I | GCNNGC | 3 cut(s) | 158, 623, 1306 |
| CaiI | CAGNNNCTG | 1 cut(s) | 542 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 1179 |
| CseI | GACGC | 1 cut(s) | 986 |
| Csp6I | GTAC | 4 cut(s) | 19, 96, 148, 1266 |
| CviQI | GTAC | 4 cut(s) | 19, 96, 148, 1266 |
| DdeI | CTNAG | 1 cut(s) | 525 |
| DpnI | GATC | 3 cut(s) | 210, 831, 1068 |
| DpnII | GATC | 3 cut(s) | 208, 829, 1066 |
| DraI | TTTAAA | 1 cut(s) | 1201 |
| EaeI | YGGCCR | 2 cut(s) | 172, 329 |
| Eam1104I | CTCTTC | 1 cut(s) | 947 |
| EarI | CTCTTC | 1 cut(s) | 947 |
| Eco130I | CCWWGG | 4 cut(s) | 151, 255, 332, 977 |
| Eco47I | GGWCC | 1 cut(s) | 1179 |
| Eco57I | CTGAAG | 1 cut(s) | 1061 |
| Eco88I | CYCGRG | 1 cut(s) | 31 |
| EcoRI | GAATTC | 1 cut(s) | 213 |
| EcoRII | CCWGG | 2 cut(s) | 195, 616 |
| EcoT14I | CCWWGG | 4 cut(s) | 151, 255, 332, 977 |
| EcoT22I | ATGCAT | 1 cut(s) | 1123 |
| ErhI | CCWWGG | 4 cut(s) | 151, 255, 332, 977 |
| Fnu4HI | GCNGC | 1 cut(s) | 540 |
| FokI | GGATG | 3 cut(s) | 376, 396, 1306 |
| Fsp4HI | GCNGC | 1 cut(s) | 540 |
| FspBI | CTAG | 4 cut(s) | 399, 896, 1329, 1349 |
| GluI | GCNGC | 1 cut(s) | 540 |
| GsaI | CCCAGC | 1 cut(s) | 539 |
| HaeIII | GGCC | 5 cut(s) | 24, 36, 174, 331, 616 |
| HapII | CCGG | 1 cut(s) | 413 |
| HgaI | GACGC | 1 cut(s) | 986 |
| Hin1I | GRCGYC | 1 cut(s) | 997 |
| HincII | GTYRAC | 1 cut(s) | 727 |
| HindII | GTYRAC | 1 cut(s) | 727 |
| HindIII | AAGCTT | 2 cut(s) | 489, 1052 |
| HinfI | GANTC | 1 cut(s) | 908 |
| HpaII | CCGG | 1 cut(s) | 413 |
| HphI | GGTGA | 1 cut(s) | 55 |
| Hpy166II | GTNNAC | 3 cut(s) | 46, 727, 962 |
| Hpy188I | TCNGA | 4 cut(s) | 781, 850, 880, 916 |
| Hpy188III | TCNNGA | 3 cut(s) | 399, 1349, 1395 |
| Hpy8I | GTNNAC | 3 cut(s) | 46, 727, 962 |
| Hpy99I | CGWCG | 1 cut(s) | 96 |
| HpyAV | CCTTC | 3 cut(s) | 151, 439, 1165 |
| HpyCH4III | ACNGT | 1 cut(s) | 340 |
| HpyCH4IV | ACGT | 1 cut(s) | 1028 |
| HpyCH4V | TGCA | 5 cut(s) | 346, 1121, 1276, 1379, 1391 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 539, 622, 1352 |
| HpyF3I | CTNAG | 1 cut(s) | 525 |
| HpySE526I | ACGT | 1 cut(s) | 1028 |
| Hsp92I | GRCGYC | 1 cut(s) | 997 |
| Kzo9I | GATC | 3 cut(s) | 208, 829, 1066 |
| LmnI | GCTCC | 3 cut(s) | 442, 1112, 1301 |
| LweI | GCATC | 2 cut(s) | 1130, 1400 |
| MaeI | CTAG | 4 cut(s) | 399, 896, 1329, 1349 |
| MaeII | ACGT | 1 cut(s) | 1028 |
| MaeIII | GTNAC | 4 cut(s) | 268, 1024, 1204, 1381 |
| MalI | GATC | 3 cut(s) | 210, 831, 1068 |
| MboI | GATC | 3 cut(s) | 208, 829, 1066 |
| MboII | GAAGA | 6 cut(s) | 387, 557, 903, 964, 1034, 1228 |
| MfeI | CAATTG | 5 cut(s) | 684, 969, 1271, 1277, 1386 |
| MhlI | GDGCHC | 4 cut(s) | 439, 1109, 1160, 1348 |
| MlsI | TGGCCA | 1 cut(s) | 331 |
| MluNI | TGGCCA | 1 cut(s) | 331 |
| MmeI | TCCRAC | 1 cut(s) | 885 |
| Mox20I | TGGCCA | 1 cut(s) | 331 |
| Mph1103I | ATGCAT | 1 cut(s) | 1123 |
| MscI | TGGCCA | 1 cut(s) | 331 |
| MseI | TTAA | 5 cut(s) | 483, 521, 711, 1058, 1200 |
| Msp20I | TGGCCA | 1 cut(s) | 331 |
| MspA1I | CMGCKG | 2 cut(s) | 83, 539 |
| MspI | CCGG | 1 cut(s) | 413 |
| MspR9I | CCNGG | 2 cut(s) | 197, 618 |
| MunI | CAATTG | 5 cut(s) | 684, 969, 1271, 1277, 1386 |
| Mva1269I | GAATGC | 2 cut(s) | 244, 1330 |
| MvaI | CCWGG | 2 cut(s) | 197, 618 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 539, 622, 1352 |
| NcoI | CCATGG | 1 cut(s) | 255 |
| NdeII | GATC | 3 cut(s) | 208, 829, 1066 |
| NmuCI | GTSAC | 1 cut(s) | 1204 |
| NsiI | ATGCAT | 1 cut(s) | 1123 |
| NspI | RCATGY | 1 cut(s) | 625 |
| NspV | TTCGAA | 1 cut(s) | 355 |
| PaeI | GCATGC | 1 cut(s) | 625 |
| PctI | GAATGC | 2 cut(s) | 244, 1330 |
| PfeI | GAWTC | 1 cut(s) | 908 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 202 |
| PkrI | GCNGC | 1 cut(s) | 541 |
| Psp6I | CCWGG | 2 cut(s) | 195, 616 |
| PspFI | CCCAGC | 1 cut(s) | 535 |
| PspGI | CCWGG | 2 cut(s) | 195, 616 |
| PspPI | GGNCC | 2 cut(s) | 34, 1179 |
| PstNI | CAGNNNCTG | 1 cut(s) | 542 |
| PvuII | CAGCTG | 1 cut(s) | 83 |
| RsaI | GTAC | 4 cut(s) | 20, 97, 149, 1267 |
| RsaNI | GTAC | 4 cut(s) | 19, 96, 148, 1266 |
| SaqAI | TTAA | 5 cut(s) | 483, 521, 711, 1058, 1200 |
| SatI | GCNGC | 1 cut(s) | 540 |
| Sau3AI | GATC | 3 cut(s) | 208, 829, 1066 |
| Sau96I | GGNCC | 2 cut(s) | 34, 1179 |
| ScrFI | CCNGG | 2 cut(s) | 197, 618 |
| SduI | GDGCHC | 4 cut(s) | 439, 1109, 1160, 1348 |
| SfaNI | GCATC | 2 cut(s) | 1130, 1400 |
| SfcI | CTRYAG | 2 cut(s) | 649, 936 |
| SfuI | TTCGAA | 1 cut(s) | 355 |
| SinI | GGWCC | 1 cut(s) | 1179 |
| SphI | GCATGC | 1 cut(s) | 625 |
| SsiI | CCGC | 3 cut(s) | 539, 1182, 1230 |
| SspI | AATATT | 1 cut(s) | 472 |
| SspMI | CTAG | 4 cut(s) | 399, 896, 1329, 1349 |
| StyD4I | CCNGG | 2 cut(s) | 195, 616 |
| StyI | CCWWGG | 4 cut(s) | 151, 255, 332, 977 |
| TaaI | ACNGT | 1 cut(s) | 340 |
| TaiI | ACGT | 1 cut(s) | 1031 |
| TaqI | TCGA | 3 cut(s) | 211, 355, 1015 |
| TauI | GCSGC | 1 cut(s) | 542 |
| TfiI | GAWTC | 1 cut(s) | 908 |
| Tru1I | TTAA | 5 cut(s) | 483, 521, 711, 1058, 1200 |
| Tru9I | TTAA | 5 cut(s) | 483, 521, 711, 1058, 1200 |
| TscAI | CASTG | 2 cut(s) | 132, 1007 |
| TseFI | GTSAC | 1 cut(s) | 1204 |
| Tsp45I | GTSAC | 1 cut(s) | 1204 |
| TspDTI | ATGAA | 6 cut(s) | 77, 133, 775, 1034, 1184, 1364 |
| TspGWI | ACGGA | 1 cut(s) | 429 |
| TspRI | CASTG | 2 cut(s) | 132, 1007 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 202 |
| VpaK11BI | GGWCC | 1 cut(s) | 1179 |
| XapI | RAATTY | 7 cut(s) | 186, 213, 370, 506, 852, 1037, 1333 |
| XbaI | TCTAGA | 2 cut(s) | 398, 1348 |
| XceI | RCATGY | 1 cut(s) | 625 |
| XspI | CTAG | 4 cut(s) | 399, 896, 1329, 1349 |
| Zsp2I | ATGCAT | 1 cut(s) | 1123 |