ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 228 - 310 | 2e-21 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 778 |
| AccBSI | CCGCTC | 1 cut(s) | 463 |
| AccI | GTMKAC | 1 cut(s) | 987 |
| AciI | CCGC | 3 cut(s) | 319, 463, 710 |
| AclWI | GGATC | 1 cut(s) | 620 |
| AcoI | YGGCCR | 1 cut(s) | 29 |
| AcsI | RAATTY | 5 cut(s) | 156, 280, 452, 752, 1075 |
| AcuI | CTGAAG | 1 cut(s) | 903 |
| AdeI | CACNNNGTG | 1 cut(s) | 290 |
| AfaI | GTAC | 4 cut(s) | 41, 295, 333, 520 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 360 |
| AflIII | ACRYGT | 2 cut(s) | 179, 1287 |
| AgsI | TTSAA | 9 cut(s) | 83, 141, 279, 405, 698, 904, 953, 1154, 1259 |
| AhlI | ACTAGT | 1 cut(s) | 223 |
| AjnI | CCWGG | 3 cut(s) | 364, 583, 728 |
| AluBI | AGCT | 3 cut(s) | 548, 676, 1157 |
| AluI | AGCT | 3 cut(s) | 548, 676, 1157 |
| Alw21I | GWGCWC | 2 cut(s) | 310, 1021 |
| AlwI | GGATC | 1 cut(s) | 620 |
| Ama87I | CYCGRG | 1 cut(s) | 801 |
| AoxI | GGCC | 3 cut(s) | 29, 362, 464 |
| ApeKI | GCWGC | 2 cut(s) | 347, 659 |
| ApoI | RAATTY | 5 cut(s) | 156, 280, 452, 752, 1075 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 125 |
| AsuC2I | CCSGG | 3 cut(s) | 288, 802, 803 |
| AsuHPI | GGTGA | 1 cut(s) | 276 |
| AvaI | CYCGRG | 1 cut(s) | 801 |
| BalI | TGGCCA | 1 cut(s) | 31 |
| BbsI | GAAGAC | 2 cut(s) | 182, 992 |
| Bbv12I | GWGCWC | 2 cut(s) | 310, 1021 |
| BbvI | GCAGC | 2 cut(s) | 334, 671 |
| BccI | CCATC | 1 cut(s) | 1033 |
| BciT130I | CCWGG | 3 cut(s) | 366, 585, 730 |
| BcnI | CCSGG | 3 cut(s) | 288, 802, 803 |
| BcuI | ACTAGT | 1 cut(s) | 223 |
| BfaI | CTAG | 4 cut(s) | 224, 852, 1080, 1161 |
| BfmI | CTRYAG | 1 cut(s) | 657 |
| BfuAI | ACCTGC | 1 cut(s) | 778 |
| BisI | GCNGC | 3 cut(s) | 348, 464, 660 |
| BlsI | GCNGC | 3 cut(s) | 349, 465, 661 |
| Bme1390I | CCNGG | 6 cut(s) | 288, 366, 585, 730, 802, 803 |
| BmeT110I | CYCGRG | 1 cut(s) | 801 |
| BmrFI | CCNGG | 6 cut(s) | 288, 366, 585, 730, 802, 803 |
| BmrI | ACTGGG | 1 cut(s) | 963 |
| BmsI | GCATC | 2 cut(s) | 359, 671 |
| BmuI | ACTGGG | 1 cut(s) | 963 |
| BpiI | GAAGAC | 2 cut(s) | 182, 992 |
| BpmI | CTGGAG | 1 cut(s) | 751 |
| BpuMI | CCSGG | 3 cut(s) | 288, 802, 803 |
| BsaJI | CCNNGG | 2 cut(s) | 583, 801 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 360 |
| Bse1I | ACTGG | 4 cut(s) | 13, 25, 969, 1180 |
| Bse3DI | GCAATG | 3 cut(s) | 334, 615, 1185 |
| BseBI | CCWGG | 3 cut(s) | 366, 585, 730 |
| BseDI | CCNNGG | 2 cut(s) | 583, 801 |
| BseGI | GGATG | 5 cut(s) | 271, 350, 511, 1044, 1140 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 360 |
| BseMI | GCAATG | 3 cut(s) | 334, 615, 1185 |
| BseMII | CTCAG | 2 cut(s) | 804, 1314 |
| BseNI | ACTGG | 4 cut(s) | 13, 25, 969, 1180 |
| BseRI | GAGGAG | 1 cut(s) | 212 |
| BseXI | GCAGC | 2 cut(s) | 334, 671 |
| BshFI | GGCC | 3 cut(s) | 31, 364, 466 |
| BsiHKAI | GWGCWC | 2 cut(s) | 310, 1021 |
| BsiHKCI | CYCGRG | 1 cut(s) | 801 |
| BsiSI | CCGG | 2 cut(s) | 287, 802 |
| BslFI | GGGAC | 1 cut(s) | 501 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 360 |
| BsmFI | GGGAC | 1 cut(s) | 501 |
| BsnI | GGCC | 3 cut(s) | 31, 364, 466 |
| BsoBI | CYCGRG | 1 cut(s) | 801 |
| Bsp1286I | GDGCHC | 2 cut(s) | 310, 1021 |
| Bsp143I | GATC | 2 cut(s) | 508, 625 |
| BspACI | CCGC | 3 cut(s) | 319, 463, 710 |
| BspANI | GGCC | 3 cut(s) | 31, 364, 466 |
| BspCNI | CTCAG | 2 cut(s) | 805, 1313 |
| BspMAI | CTGCAG | 1 cut(s) | 661 |
| BspMI | ACCTGC | 1 cut(s) | 778 |
| BspPI | GGATC | 1 cut(s) | 620 |
| BsrBI | CCGCTC | 1 cut(s) | 463 |
| BsrDI | GCAATG | 3 cut(s) | 334, 615, 1185 |
| BsrI | ACTGG | 4 cut(s) | 13, 25, 969, 1180 |
| BssECI | CCNNGG | 2 cut(s) | 583, 801 |
| BssMI | GATC | 2 cut(s) | 508, 625 |
| Bst2UI | CCWGG | 3 cut(s) | 366, 585, 730 |
| Bst4CI | ACNGT | 2 cut(s) | 523, 1103 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 1 cut(s) | 714 |
| BstDEI | CTNAG | 2 cut(s) | 813, 1300 |
| BstF5I | GGATG | 5 cut(s) | 271, 350, 511, 1044, 1140 |
| BstKTI | GATC | 2 cut(s) | 511, 628 |
| BstMBI | GATC | 2 cut(s) | 508, 625 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 722, 1232 |
| BstNI | CCWGG | 3 cut(s) | 366, 585, 730 |
| BstNSI | RCATGY | 4 cut(s) | 183, 716, 800, 1239 |
| BstSCI | CCNGG | 6 cut(s) | 286, 364, 583, 728, 800, 801 |
| BstSFI | CTRYAG | 1 cut(s) | 657 |
| BstV1I | GCAGC | 2 cut(s) | 334, 671 |
| BstV2I | GAAGAC | 2 cut(s) | 182, 992 |
| BsuRI | GGCC | 3 cut(s) | 31, 364, 466 |
| BtsCI | GGATG | 5 cut(s) | 271, 350, 511, 1044, 1140 |
| BtsIMutI | CAGTG | 4 cut(s) | 20, 32, 528, 1108 |
| BveI | ACCTGC | 1 cut(s) | 778 |
| Cac8I | GCNNGC | 1 cut(s) | 714 |
| Cfr9I | CCCGGG | 1 cut(s) | 801 |
| Csp6I | GTAC | 4 cut(s) | 40, 294, 332, 519 |
| CviAII | CATG | 7 cut(s) | 180, 713, 783, 797, 1004, 1115, 1236 |
| CviQI | GTAC | 4 cut(s) | 40, 294, 332, 519 |
| DdeI | CTNAG | 2 cut(s) | 813, 1300 |
| DpnI | GATC | 2 cut(s) | 510, 627 |
| DpnII | GATC | 2 cut(s) | 508, 625 |
| DraIII | CACNNNGTG | 1 cut(s) | 290 |
| EaeI | YGGCCR | 1 cut(s) | 29 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 1 cut(s) | 903 |
| Eco88I | CYCGRG | 1 cut(s) | 801 |
| EcoRI | GAATTC | 2 cut(s) | 156, 1075 |
| EcoRII | CCWGG | 3 cut(s) | 364, 583, 728 |
| FaeI | CATG | 7 cut(s) | 183, 716, 786, 800, 1007, 1118, 1239 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1266, 1298 |
| FaqI | GGGAC | 1 cut(s) | 501 |
| FatI | CATG | 7 cut(s) | 179, 712, 782, 796, 1003, 1114, 1235 |
| FauNDI | CATATG | 1 cut(s) | 1070 |
| FblI | GTMKAC | 1 cut(s) | 987 |
| Fnu4HI | GCNGC | 3 cut(s) | 348, 464, 660 |
| FokI | GGATG | 5 cut(s) | 278, 337, 518, 1051, 1147 |
| Fsp4HI | GCNGC | 3 cut(s) | 348, 464, 660 |
| FspBI | CTAG | 4 cut(s) | 224, 852, 1080, 1161 |
| GluI | GCNGC | 3 cut(s) | 348, 464, 660 |
| GsuI | CTGGAG | 1 cut(s) | 751 |
| HaeIII | GGCC | 3 cut(s) | 31, 364, 466 |
| HapII | CCGG | 2 cut(s) | 287, 802 |
| Hin1II | CATG | 7 cut(s) | 183, 716, 786, 800, 1007, 1118, 1239 |
| HindIII | AAGCTT | 2 cut(s) | 674, 1155 |
| HinfI | GANTC | 3 cut(s) | 553, 689, 881 |
| HpaII | CCGG | 2 cut(s) | 287, 802 |
| HphI | GGTGA | 1 cut(s) | 276 |
| Hpy166II | GTNNAC | 2 cut(s) | 974, 988 |
| Hpy188I | TCNGA | 3 cut(s) | 625, 814, 1094 |
| Hpy188III | TCNNGA | 2 cut(s) | 852, 1080 |
| Hpy8I | GTNNAC | 2 cut(s) | 974, 988 |
| Hpy99I | CGWCG | 1 cut(s) | 339 |
| HpyAV | CCTTC | 2 cut(s) | 101, 729 |
| HpyCH4III | ACNGT | 2 cut(s) | 523, 1103 |
| HpyCH4IV | ACGT | 3 cut(s) | 334, 1012, 1289 |
| HpyCH4V | TGCA | 9 cut(s) | 70, 350, 659, 683, 826, 870, 943, 1118, 1235 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 722, 1232 |
| HpyF3I | CTNAG | 2 cut(s) | 813, 1300 |
| HpySE526I | ACGT | 3 cut(s) | 334, 1012, 1289 |
| Hsp92II | CATG | 7 cut(s) | 183, 716, 786, 800, 1007, 1118, 1239 |
| Kzo9I | GATC | 2 cut(s) | 508, 625 |
| LmnI | GCTCC | 5 cut(s) | 460, 545, 721, 914, 1182 |
| Lsp1109I | GCAGC | 2 cut(s) | 334, 671 |
| LweI | GCATC | 2 cut(s) | 359, 671 |
| MaeI | CTAG | 4 cut(s) | 224, 852, 1080, 1161 |
| MaeII | ACGT | 3 cut(s) | 334, 1012, 1289 |
| MaeIII | GTNAC | 2 cut(s) | 87, 1171 |
| MalI | GATC | 2 cut(s) | 510, 627 |
| MbiI | CCGCTC | 1 cut(s) | 463 |
| MboI | GATC | 2 cut(s) | 508, 625 |
| MboII | GAAGA | 6 cut(s) | 187, 236, 267, 548, 992, 1286 |
| MfeI | CAATTG | 2 cut(s) | 141, 991 |
| MhlI | GDGCHC | 2 cut(s) | 310, 1021 |
| MlsI | TGGCCA | 1 cut(s) | 31 |
| MluNI | TGGCCA | 1 cut(s) | 31 |
| MlyI | GAGTC | 2 cut(s) | 683, 890 |
| MnlI | CCTC | 9 cut(s) | 190, 193, 364, 438, 477, 478, 570, 808, 825 |
| Mox20I | TGGCCA | 1 cut(s) | 31 |
| MroXI | GAANNNNTTC | 1 cut(s) | 125 |
| MscI | TGGCCA | 1 cut(s) | 31 |
| MseI | TTAA | 7 cut(s) | 95, 216, 234, 251, 704, 980, 1311 |
| Msp20I | TGGCCA | 1 cut(s) | 31 |
| MspI | CCGG | 2 cut(s) | 287, 802 |
| MspR9I | CCNGG | 6 cut(s) | 288, 366, 585, 730, 802, 803 |
| MunI | CAATTG | 2 cut(s) | 141, 991 |
| MvaI | CCWGG | 3 cut(s) | 366, 585, 730 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 722, 1232 |
| NciI | CCSGG | 3 cut(s) | 288, 802, 803 |
| NdeI | CATATG | 1 cut(s) | 1070 |
| NdeII | GATC | 2 cut(s) | 508, 625 |
| NlaIII | CATG | 7 cut(s) | 183, 716, 786, 800, 1007, 1118, 1239 |
| NmuCI | GTSAC | 1 cut(s) | 87 |
| NspI | RCATGY | 4 cut(s) | 183, 716, 800, 1239 |
| PaeI | GCATGC | 1 cut(s) | 716 |
| PciI | ACATGT | 1 cut(s) | 179 |
| PdmI | GAANNNNTTC | 1 cut(s) | 125 |
| PfeI | GAWTC | 1 cut(s) | 553 |
| PfoI | TCCNGGA | 1 cut(s) | 728 |
| PkrI | GCNGC | 3 cut(s) | 349, 465, 661 |
| PleI | GAGTC | 2 cut(s) | 683, 889 |
| PpsI | GAGTC | 2 cut(s) | 683, 889 |
| PscI | ACATGT | 1 cut(s) | 179 |
| Psp6I | CCWGG | 3 cut(s) | 364, 583, 728 |
| PspGI | CCWGG | 3 cut(s) | 364, 583, 728 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 32, 64 |
| PstI | CTGCAG | 1 cut(s) | 661 |
| RsaI | GTAC | 4 cut(s) | 41, 295, 333, 520 |
| RsaNI | GTAC | 4 cut(s) | 40, 294, 332, 519 |
| SaqAI | TTAA | 7 cut(s) | 95, 216, 234, 251, 704, 980, 1311 |
| SatI | GCNGC | 3 cut(s) | 348, 464, 660 |
| Sau3AI | GATC | 2 cut(s) | 508, 625 |
| SchI | GAGTC | 2 cut(s) | 683, 890 |
| ScrFI | CCNGG | 6 cut(s) | 288, 366, 585, 730, 802, 803 |
| SduI | GDGCHC | 2 cut(s) | 310, 1021 |
| SfaNI | GCATC | 2 cut(s) | 359, 671 |
| SfcI | CTRYAG | 1 cut(s) | 657 |
| SmaI | CCCGGG | 1 cut(s) | 803 |
| SpeI | ACTAGT | 1 cut(s) | 223 |
| SphI | GCATGC | 1 cut(s) | 716 |
| SsiI | CCGC | 3 cut(s) | 319, 463, 710 |
| SspMI | CTAG | 4 cut(s) | 224, 852, 1080, 1161 |
| StyD4I | CCNGG | 6 cut(s) | 286, 364, 583, 728, 800, 801 |
| TaaI | ACNGT | 2 cut(s) | 523, 1103 |
| TaiI | ACGT | 3 cut(s) | 337, 1015, 1292 |
| TaqI | TCGA | 4 cut(s) | 51, 63, 310, 749 |
| TatI | WGTACW | 1 cut(s) | 39 |
| TauI | GCSGC | 1 cut(s) | 466 |
| TfiI | GAWTC | 1 cut(s) | 553 |
| Tru1I | TTAA | 7 cut(s) | 95, 216, 234, 251, 704, 980, 1311 |
| Tru9I | TTAA | 7 cut(s) | 95, 216, 234, 251, 704, 980, 1311 |
| TscAI | CASTG | 4 cut(s) | 20, 32, 528, 1108 |
| TseFI | GTSAC | 1 cut(s) | 87 |
| TseI | GCWGC | 2 cut(s) | 347, 659 |
| Tsp45I | GTSAC | 1 cut(s) | 87 |
| TspDTI | ATGAA | 5 cut(s) | 657, 745, 992, 1057, 1103 |
| TspGWI | ACGGA | 1 cut(s) | 1195 |
| TspMI | CCCGGG | 1 cut(s) | 801 |
| TspRI | CASTG | 4 cut(s) | 20, 32, 528, 1108 |
| XapI | RAATTY | 5 cut(s) | 156, 280, 452, 752, 1075 |
| XbaI | TCTAGA | 2 cut(s) | 851, 1079 |
| XceI | RCATGY | 4 cut(s) | 183, 716, 800, 1239 |
| XmaI | CCCGGG | 1 cut(s) | 801 |
| XmiI | GTMKAC | 1 cut(s) | 987 |
| XmnI | GAANNNNTTC | 1 cut(s) | 125 |
| XspI | CTAG | 4 cut(s) | 224, 852, 1080, 1161 |