Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 42 - 110 | 3e-09 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 149 |
| AccII | CGCG | 2 cut(s) | 488, 555 |
| AciI | CCGC | 3 cut(s) | 6, 257, 392 |
| AclWI | GGATC | 1 cut(s) | 189 |
| AcuI | CTGAAG | 1 cut(s) | 479 |
| AfaI | GTAC | 1 cut(s) | 410 |
| AgsI | TTSAA | 4 cut(s) | 64, 118, 314, 344 |
| AjnI | CCWGG | 3 cut(s) | 229, 381, 572 |
| AluBI | AGCT | 6 cut(s) | 68, 206, 269, 466, 484, 545 |
| AluI | AGCT | 6 cut(s) | 68, 206, 269, 466, 484, 545 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw26I | GTCTC | 1 cut(s) | 572 |
| AlwI | GGATC | 1 cut(s) | 189 |
| AoxI | GGCC | 1 cut(s) | 43 |
| AspLEI | GCGC | 2 cut(s) | 490, 555 |
| AsuC2I | CCSGG | 1 cut(s) | 505 |
| AsuHPI | GGTGA | 1 cut(s) | 516 |
| BanII | GRGCYC | 1 cut(s) | 486 |
| BbsI | GAAGAC | 2 cut(s) | 374, 509 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BccI | CCATC | 2 cut(s) | 125, 422 |
| BciT130I | CCWGG | 3 cut(s) | 231, 383, 574 |
| BclI | TGATCA | 1 cut(s) | 600 |
| BcnI | CCSGG | 1 cut(s) | 505 |
| BcoDI | GTCTC | 1 cut(s) | 572 |
| BfaI | CTAG | 2 cut(s) | 254, 327 |
| BfuAI | ACCTGC | 1 cut(s) | 149 |
| BglII | AGATCT | 1 cut(s) | 451 |
| Bme1390I | CCNGG | 4 cut(s) | 231, 383, 505, 574 |
| BmiI | GGNNCC | 2 cut(s) | 96, 540 |
| BmrFI | CCNGG | 4 cut(s) | 231, 383, 505, 574 |
| BmsI | GCATC | 1 cut(s) | 27 |
| BpiI | GAAGAC | 2 cut(s) | 374, 509 |
| BpmI | CTGGAG | 3 cut(s) | 404, 525, 556 |
| BpuMI | CCSGG | 1 cut(s) | 505 |
| BsaJI | CCNNGG | 1 cut(s) | 229 |
| Bse118I | RCCGGY | 1 cut(s) | 549 |
| BseBI | CCWGG | 3 cut(s) | 231, 383, 574 |
| BseDI | CCNNGG | 1 cut(s) | 229 |
| BseGI | GGATG | 1 cut(s) | 229 |
| BseRI | GAGGAG | 2 cut(s) | 40, 313 |
| Bsh1236I | CGCG | 2 cut(s) | 488, 555 |
| BshFI | GGCC | 1 cut(s) | 45 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiSI | CCGG | 2 cut(s) | 505, 550 |
| BsiWI | CGTACG | 1 cut(s) | 408 |
| BslFI | GGGAC | 2 cut(s) | 204, 212 |
| BsmAI | GTCTC | 1 cut(s) | 572 |
| BsmFI | GGGAC | 2 cut(s) | 204, 212 |
| BsnI | GGCC | 1 cut(s) | 45 |
| Bsp1286I | GDGCHC | 1 cut(s) | 486 |
| Bsp143I | GATC | 4 cut(s) | 181, 451, 556, 600 |
| BspACI | CCGC | 3 cut(s) | 6, 257, 392 |
| BspANI | GGCC | 1 cut(s) | 45 |
| BspFNI | CGCG | 2 cut(s) | 488, 555 |
| BspLI | GGNNCC | 2 cut(s) | 96, 540 |
| BspMI | ACCTGC | 1 cut(s) | 149 |
| BspPI | GGATC | 1 cut(s) | 189 |
| BsrFI | RCCGGY | 1 cut(s) | 549 |
| BssAI | RCCGGY | 1 cut(s) | 549 |
| BssECI | CCNNGG | 1 cut(s) | 229 |
| BssMI | GATC | 4 cut(s) | 181, 451, 556, 600 |
| Bst2UI | CCWGG | 3 cut(s) | 231, 383, 574 |
| BstC8I | GCNNGC | 1 cut(s) | 486 |
| BstEII | GGTNACC | 1 cut(s) | 522 |
| BstF5I | GGATG | 1 cut(s) | 229 |
| BstFNI | CGCG | 2 cut(s) | 488, 555 |
| BstHHI | GCGC | 2 cut(s) | 490, 555 |
| BstKTI | GATC | 4 cut(s) | 184, 454, 559, 603 |
| BstMAI | GTCTC | 1 cut(s) | 572 |
| BstMBI | GATC | 4 cut(s) | 181, 451, 556, 600 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 463 |
| BstNI | CCWGG | 3 cut(s) | 231, 383, 574 |
| BstPI | GGTNACC | 1 cut(s) | 522 |
| BstSCI | CCNGG | 4 cut(s) | 229, 381, 503, 572 |
| BstUI | CGCG | 2 cut(s) | 488, 555 |
| BstV2I | GAAGAC | 2 cut(s) | 374, 509 |
| BstX2I | RGATCY | 1 cut(s) | 451 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 111 |
| BstYI | RGATCY | 1 cut(s) | 451 |
| BsuRI | GGCC | 1 cut(s) | 45 |
| BtsCI | GGATG | 1 cut(s) | 229 |
| BveI | ACCTGC | 1 cut(s) | 149 |
| Cac8I | GCNNGC | 1 cut(s) | 486 |
| CfoI | GCGC | 2 cut(s) | 490, 555 |
| Cfr10I | RCCGGY | 1 cut(s) | 549 |
| CseI | GACGC | 1 cut(s) | 480 |
| Csp6I | GTAC | 1 cut(s) | 409 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 201, 236 |
| CviAII | CATG | 2 cut(s) | 282, 364 |
| CviQI | GTAC | 1 cut(s) | 409 |
| DpnI | GATC | 4 cut(s) | 183, 453, 558, 602 |
| DpnII | GATC | 4 cut(s) | 181, 451, 556, 600 |
| Ecl136II | GAGCTC | 1 cut(s) | 484 |
| Eco24I | GRGCYC | 1 cut(s) | 486 |
| Eco53kI | GAGCTC | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 1 cut(s) | 479 |
| Eco91I | GGTNACC | 1 cut(s) | 522 |
| EcoICRI | GAGCTC | 1 cut(s) | 484 |
| EcoO65I | GGTNACC | 1 cut(s) | 522 |
| EcoRII | CCWGG | 3 cut(s) | 229, 381, 572 |
| EcoT38I | GRGCYC | 1 cut(s) | 486 |
| FaeI | CATG | 2 cut(s) | 285, 367 |
| FaiI | YATR | 7 cut(s) | 29, 78, 263, 283, 303, 365, 596 |
| FaqI | GGGAC | 2 cut(s) | 204, 212 |
| FatI | CATG | 2 cut(s) | 281, 363 |
| FbaI | TGATCA | 1 cut(s) | 600 |
| FokI | GGATG | 1 cut(s) | 236 |
| FriOI | GRGCYC | 1 cut(s) | 486 |
| FspBI | CTAG | 2 cut(s) | 254, 327 |
| GlaI | GCGC | 2 cut(s) | 489, 554 |
| GsuI | CTGGAG | 3 cut(s) | 404, 525, 556 |
| HaeIII | GGCC | 1 cut(s) | 45 |
| HapII | CCGG | 2 cut(s) | 505, 550 |
| HgaI | GACGC | 1 cut(s) | 480 |
| HhaI | GCGC | 2 cut(s) | 490, 555 |
| Hin1II | CATG | 2 cut(s) | 285, 367 |
| Hin6I | GCGC | 2 cut(s) | 488, 553 |
| HinP1I | GCGC | 2 cut(s) | 488, 553 |
| HindIII | AAGCTT | 2 cut(s) | 267, 464 |
| HinfI | GANTC | 3 cut(s) | 250, 298, 320 |
| HpaII | CCGG | 2 cut(s) | 505, 550 |
| HphI | GGTGA | 1 cut(s) | 516 |
| Hpy166II | GTNNAC | 3 cut(s) | 11, 297, 501 |
| Hpy188I | TCNGA | 2 cut(s) | 36, 561 |
| Hpy188III | TCNNGA | 2 cut(s) | 16, 185 |
| Hpy8I | GTNNAC | 3 cut(s) | 11, 297, 501 |
| HpyAV | CCTTC | 1 cut(s) | 112 |
| HpyCH4V | TGCA | 4 cut(s) | 158, 212, 281, 335 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 463 |
| Hsp92II | CATG | 2 cut(s) | 285, 367 |
| HspAI | GCGC | 2 cut(s) | 488, 553 |
| Ksp22I | TGATCA | 1 cut(s) | 600 |
| Kzo9I | GATC | 4 cut(s) | 181, 451, 556, 600 |
| LmnI | GCTCC | 3 cut(s) | 73, 203, 544 |
| LweI | GCATC | 1 cut(s) | 27 |
| MaeI | CTAG | 2 cut(s) | 254, 327 |
| MaeIII | GTNAC | 1 cut(s) | 522 |
| MalI | GATC | 4 cut(s) | 183, 453, 558, 602 |
| MboI | GATC | 4 cut(s) | 181, 451, 556, 600 |
| MboII | GAAGA | 5 cut(s) | 379, 437, 472, 509, 589 |
| MflI | RGATCY | 1 cut(s) | 451 |
| MhlI | GDGCHC | 1 cut(s) | 486 |
| MluCI | AATT | 4 cut(s) | 109, 276, 562, 587 |
| MlyI | GAGTC | 2 cut(s) | 292, 314 |
| MnlI | CCTC | 8 cut(s) | 56, 61, 108, 143, 161, 181, 334, 537 |
| MseI | TTAA | 2 cut(s) | 123, 177 |
| MspA1I | CMGCKG | 1 cut(s) | 545 |
| MspI | CCGG | 2 cut(s) | 505, 550 |
| MspR9I | CCNGG | 4 cut(s) | 231, 383, 505, 574 |
| MvaI | CCWGG | 3 cut(s) | 231, 383, 574 |
| MvnI | CGCG | 2 cut(s) | 488, 555 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 463 |
| NciI | CCSGG | 1 cut(s) | 505 |
| NdeII | GATC | 4 cut(s) | 181, 451, 556, 600 |
| NlaIII | CATG | 2 cut(s) | 285, 367 |
| NlaIV | GGNNCC | 2 cut(s) | 96, 540 |
| NmuCI | GTSAC | 1 cut(s) | 522 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 526 |
| PfeI | GAWTC | 1 cut(s) | 250 |
| Pfl23II | CGTACG | 1 cut(s) | 408 |
| PfoI | TCCNGGA | 1 cut(s) | 572 |
| PleI | GAGTC | 2 cut(s) | 292, 314 |
| PpsI | GAGTC | 2 cut(s) | 292, 314 |
| Psp124BI | GAGCTC | 1 cut(s) | 486 |
| Psp6I | CCWGG | 3 cut(s) | 229, 381, 572 |
| PspEI | GGTNACC | 1 cut(s) | 522 |
| PspGI | CCWGG | 3 cut(s) | 229, 381, 572 |
| PspLI | CGTACG | 1 cut(s) | 408 |
| PspN4I | GGNNCC | 2 cut(s) | 96, 540 |
| PsuI | RGATCY | 1 cut(s) | 451 |
| PvuII | CAGCTG | 1 cut(s) | 545 |
| RsaI | GTAC | 1 cut(s) | 410 |
| RsaNI | GTAC | 1 cut(s) | 409 |
| SacI | GAGCTC | 1 cut(s) | 486 |
| SaqAI | TTAA | 2 cut(s) | 123, 177 |
| Sau3AI | GATC | 4 cut(s) | 181, 451, 556, 600 |
| SchI | GAGTC | 2 cut(s) | 292, 314 |
| ScrFI | CCNGG | 4 cut(s) | 231, 383, 505, 574 |
| SduI | GDGCHC | 1 cut(s) | 486 |
| SfaNI | GCATC | 1 cut(s) | 27 |
| SmlI | CTYRAG | 1 cut(s) | 14 |
| SmoI | CTYRAG | 1 cut(s) | 14 |
| Sse9I | AATT | 4 cut(s) | 109, 276, 562, 587 |
| SsiI | CCGC | 3 cut(s) | 6, 257, 392 |
| SspI | AATATT | 1 cut(s) | 607 |
| SspMI | CTAG | 2 cut(s) | 254, 327 |
| SstI | GAGCTC | 1 cut(s) | 486 |
| StyD4I | CCNGG | 4 cut(s) | 229, 381, 503, 572 |
| TaqI | TCGA | 2 cut(s) | 476, 529 |
| TaqII | GACCGA | 1 cut(s) | 510 |
| TasI | AATT | 4 cut(s) | 109, 276, 562, 587 |
| TfiI | GAWTC | 1 cut(s) | 250 |
| Tru1I | TTAA | 2 cut(s) | 123, 177 |
| Tru9I | TTAA | 2 cut(s) | 123, 177 |
| TseFI | GTSAC | 1 cut(s) | 522 |
| Tsp45I | GTSAC | 1 cut(s) | 522 |
| TspDTI | ATGAA | 3 cut(s) | 380, 438, 458 |
| TspGWI | ACGGA | 4 cut(s) | 77, 131, 260, 389 |
| XspI | CTAG | 2 cut(s) | 254, 327 |