Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 275 |
| AfaI | GTAC | 2 cut(s) | 130, 136 |
| AgsI | TTSAA | 4 cut(s) | 56, 63, 337, 347 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 4 cut(s) | 11, 106, 160, 206 |
| AluI | AGCT | 4 cut(s) | 11, 106, 160, 206 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 155 |
| Ama87I | CYCGRG | 1 cut(s) | 73 |
| ApeKI | GCWGC | 1 cut(s) | 103 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 356 |
| AvaI | CYCGRG | 1 cut(s) | 73 |
| BauI | CACGAG | 1 cut(s) | 279 |
| BbvI | GCAGC | 1 cut(s) | 115 |
| BccI | CCATC | 1 cut(s) | 263 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BfaI | CTAG | 1 cut(s) | 36 |
| BisI | GCNGC | 2 cut(s) | 104, 276 |
| BlsI | GCNGC | 2 cut(s) | 105, 277 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| BmeT110I | CYCGRG | 1 cut(s) | 73 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 1 cut(s) | 90 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseGI | GGATG | 1 cut(s) | 105 |
| BseMII | CTCAG | 1 cut(s) | 147 |
| BseXI | GCAGC | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 73 |
| BsmI | GAATGC | 1 cut(s) | 46 |
| BsoBI | CYCGRG | 1 cut(s) | 73 |
| Bsp143I | GATC | 3 cut(s) | 258, 322, 339 |
| BspACI | CCGC | 1 cut(s) | 275 |
| BspCNI | CTCAG | 1 cut(s) | 148 |
| BssMI | GATC | 3 cut(s) | 258, 322, 339 |
| BssSI | CACGAG | 1 cut(s) | 279 |
| Bst2BI | CACGAG | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| Bst6I | CTCTTC | 1 cut(s) | 74 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 33 |
| BstDEI | CTNAG | 2 cut(s) | 125, 156 |
| BstF5I | GGATG | 1 cut(s) | 105 |
| BstKTI | GATC | 3 cut(s) | 261, 325, 342 |
| BstMBI | GATC | 3 cut(s) | 258, 322, 339 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 41 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 2 cut(s) | 35, 236 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstV1I | GCAGC | 1 cut(s) | 115 |
| BtsCI | GGATG | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 33 |
| CaiI | CAGNNNCTG | 1 cut(s) | 155 |
| Csp6I | GTAC | 2 cut(s) | 129, 135 |
| CviAII | CATG | 3 cut(s) | 32, 110, 233 |
| CviJI | RGCY | 7 cut(s) | 11, 15, 106, 160, 206, 278, 285 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 15, 106, 160, 206, 278, 285 |
| CviQI | GTAC | 2 cut(s) | 129, 135 |
| DdeI | CTNAG | 2 cut(s) | 125, 156 |
| DpnI | GATC | 3 cut(s) | 260, 324, 341 |
| DpnII | GATC | 3 cut(s) | 258, 322, 339 |
| Eam1104I | CTCTTC | 1 cut(s) | 74 |
| EarI | CTCTTC | 1 cut(s) | 74 |
| Eco88I | CYCGRG | 1 cut(s) | 73 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| FaeI | CATG | 3 cut(s) | 35, 113, 236 |
| FaiI | YATR | 6 cut(s) | 21, 33, 111, 140, 227, 234 |
| FatI | CATG | 3 cut(s) | 31, 109, 232 |
| Fnu4HI | GCNGC | 2 cut(s) | 104, 276 |
| FokI | GGATG | 1 cut(s) | 112 |
| Fsp4HI | GCNGC | 2 cut(s) | 104, 276 |
| FspBI | CTAG | 1 cut(s) | 36 |
| GluI | GCNGC | 2 cut(s) | 104, 276 |
| Hin1II | CATG | 3 cut(s) | 35, 113, 236 |
| HinfI | GANTC | 1 cut(s) | 59 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 320 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 73, 256 |
| HpyAV | CCTTC | 2 cut(s) | 207, 346 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 1 cut(s) | 103 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 41 |
| HpyF3I | CTNAG | 2 cut(s) | 125, 156 |
| Hsp92II | CATG | 3 cut(s) | 35, 113, 236 |
| Kzo9I | GATC | 3 cut(s) | 258, 322, 339 |
| LmnI | GCTCC | 3 cut(s) | 8, 111, 211 |
| LpnPI | CCDG | 3 cut(s) | 276, 285, 303 |
| Lsp1109I | GCAGC | 1 cut(s) | 115 |
| LweI | GCATC | 1 cut(s) | 90 |
| MaeI | CTAG | 1 cut(s) | 36 |
| MaeIII | GTNAC | 1 cut(s) | 151 |
| MalI | GATC | 3 cut(s) | 260, 324, 341 |
| MboI | GATC | 3 cut(s) | 258, 322, 339 |
| MboII | GAAGA | 3 cut(s) | 61, 154, 349 |
| MluCI | AATT | 4 cut(s) | 63, 118, 177, 213 |
| MnlI | CCTC | 1 cut(s) | 250 |
| MroXI | GAANNNNTTC | 1 cut(s) | 356 |
| MseI | TTAA | 1 cut(s) | 117 |
| MslI | CAYNNNNRTG | 2 cut(s) | 98, 347 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| Mva1269I | GAATGC | 1 cut(s) | 46 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 41 |
| NdeII | GATC | 3 cut(s) | 258, 322, 339 |
| NlaIII | CATG | 3 cut(s) | 35, 113, 236 |
| NspI | RCATGY | 2 cut(s) | 35, 236 |
| PaeI | GCATGC | 1 cut(s) | 35 |
| PctI | GAATGC | 1 cut(s) | 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 356 |
| PfeI | GAWTC | 1 cut(s) | 59 |
| PkrI | GCNGC | 2 cut(s) | 105, 277 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PstNI | CAGNNNCTG | 1 cut(s) | 155 |
| RsaI | GTAC | 2 cut(s) | 130, 136 |
| RsaNI | GTAC | 2 cut(s) | 129, 135 |
| RseI | CAYNNNNRTG | 2 cut(s) | 98, 347 |
| SaqAI | TTAA | 1 cut(s) | 117 |
| SatI | GCNGC | 2 cut(s) | 104, 276 |
| Sau3AI | GATC | 3 cut(s) | 258, 322, 339 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SetI | ASST | 6 cut(s) | 13, 108, 162, 199, 208, 304 |
| SfaNI | GCATC | 1 cut(s) | 90 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 98, 347 |
| SphI | GCATGC | 1 cut(s) | 35 |
| Sse9I | AATT | 4 cut(s) | 63, 118, 177, 213 |
| SsiI | CCGC | 1 cut(s) | 275 |
| SspMI | CTAG | 1 cut(s) | 36 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaqI | TCGA | 1 cut(s) | 175 |
| TasI | AATT | 4 cut(s) | 63, 118, 177, 213 |
| TauI | GCSGC | 1 cut(s) | 278 |
| TfiI | GAWTC | 1 cut(s) | 59 |
| Tru1I | TTAA | 1 cut(s) | 117 |
| Tru9I | TTAA | 1 cut(s) | 117 |
| TseI | GCWGC | 1 cut(s) | 103 |
| TspDTI | ATGAA | 5 cut(s) | 77, 126, 155, 161, 236 |
| TspGWI | ACGGA | 1 cut(s) | 38 |
| XceI | RCATGY | 2 cut(s) | 35, 236 |
| XmnI | GAANNNNTTC | 1 cut(s) | 356 |
| XspI | CTAG | 1 cut(s) | 36 |