ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 166 - 213 | 9.5e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 15 |
| AcoI | YGGCCR | 1 cut(s) | 300 |
| AcuI | CTGAAG | 1 cut(s) | 22 |
| AfaI | GTAC | 1 cut(s) | 377 |
| AgsI | TTSAA | 8 cut(s) | 23, 105, 212, 220, 262, 286, 446, 475 |
| AluBI | AGCT | 3 cut(s) | 42, 215, 289 |
| AluI | AGCT | 3 cut(s) | 42, 215, 289 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 2 cut(s) | 135, 647 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 94 |
| Ama87I | CYCGRG | 1 cut(s) | 157 |
| AoxI | GGCC | 3 cut(s) | 161, 300, 342 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 198 |
| AspLEI | GCGC | 1 cut(s) | 279 |
| AspS9I | GGNCC | 2 cut(s) | 343, 659 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AsuNHI | GCTAGC | 1 cut(s) | 428 |
| AvaI | CYCGRG | 1 cut(s) | 157 |
| AvaII | GGWCC | 1 cut(s) | 659 |
| BbsI | GAAGAC | 1 cut(s) | 250 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BccI | CCATC | 2 cut(s) | 41, 292 |
| BceAI | ACGGC | 1 cut(s) | 287 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 148, 182 |
| BclI | TGATCA | 1 cut(s) | 414 |
| BcoDI | GTCTC | 2 cut(s) | 135, 647 |
| BfaI | CTAG | 3 cut(s) | 429, 638, 719 |
| BfoI | RGCGCY | 1 cut(s) | 280 |
| BmcAI | AGTACT | 1 cut(s) | 377 |
| Bme18I | GGWCC | 1 cut(s) | 659 |
| BmeT110I | CYCGRG | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 2 cut(s) | 343, 659 |
| BmsI | GCATC | 2 cut(s) | 198, 673 |
| BmtI | GCTAGC | 1 cut(s) | 432 |
| BpiI | GAAGAC | 1 cut(s) | 250 |
| BpmI | CTGGAG | 1 cut(s) | 731 |
| BpuEI | CTTGAG | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 1 cut(s) | 158 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 365, 395 |
| Bse1I | ACTGG | 2 cut(s) | 383, 714 |
| Bse3DI | GCAATG | 1 cut(s) | 439 |
| BseDI | CCNNGG | 1 cut(s) | 158 |
| BseGI | GGATG | 2 cut(s) | 688, 733 |
| BseMI | GCAATG | 1 cut(s) | 439 |
| BseMII | CTCAG | 2 cut(s) | 101, 199 |
| BseNI | ACTGG | 2 cut(s) | 383, 714 |
| BseRI | GAGGAG | 1 cut(s) | 737 |
| BshFI | GGCC | 3 cut(s) | 163, 302, 344 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiHKCI | CYCGRG | 1 cut(s) | 157 |
| BsmAI | GTCTC | 2 cut(s) | 135, 647 |
| BsmI | GAATGC | 1 cut(s) | 338 |
| BsnI | GGCC | 3 cut(s) | 163, 302, 344 |
| BsoBI | CYCGRG | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp143I | GATC | 3 cut(s) | 5, 414, 608 |
| BspACI | CCGC | 1 cut(s) | 15 |
| BspANI | GGCC | 3 cut(s) | 163, 302, 344 |
| BspCNI | CTCAG | 2 cut(s) | 100, 198 |
| BspOI | GCTAGC | 1 cut(s) | 432 |
| BsrDI | GCAATG | 1 cut(s) | 439 |
| BsrI | ACTGG | 2 cut(s) | 383, 714 |
| BssECI | CCNNGG | 1 cut(s) | 158 |
| BssMI | GATC | 3 cut(s) | 5, 414, 608 |
| Bst4CI | ACNGT | 1 cut(s) | 28 |
| Bst6I | CTCTTC | 2 cut(s) | 16, 215 |
| BstC8I | GCNNGC | 1 cut(s) | 430 |
| BstDEI | CTNAG | 3 cut(s) | 87, 185, 267 |
| BstF5I | GGATG | 2 cut(s) | 688, 733 |
| BstH2I | RGCGCY | 1 cut(s) | 280 |
| BstHHI | GCGC | 1 cut(s) | 279 |
| BstKTI | GATC | 3 cut(s) | 8, 417, 611 |
| BstMAI | GTCTC | 2 cut(s) | 135, 647 |
| BstMBI | GATC | 3 cut(s) | 5, 414, 608 |
| BstV2I | GAAGAC | 1 cut(s) | 250 |
| BstX2I | RGATCY | 1 cut(s) | 5 |
| BstYI | RGATCY | 1 cut(s) | 5 |
| BsuRI | GGCC | 3 cut(s) | 163, 302, 344 |
| BtsCI | GGATG | 2 cut(s) | 688, 733 |
| BtsI | GCAGTG | 1 cut(s) | 747 |
| BtsIMutI | CAGTG | 2 cut(s) | 707, 747 |
| Cac8I | GCNNGC | 1 cut(s) | 430 |
| CaiI | CAGNNNCTG | 1 cut(s) | 94 |
| CfoI | GCGC | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 2 cut(s) | 343, 659 |
| Csp6I | GTAC | 1 cut(s) | 376 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 378, 413 |
| CviAII | CATG | 1 cut(s) | 295 |
| CviQI | GTAC | 1 cut(s) | 376 |
| DdeI | CTNAG | 3 cut(s) | 87, 185, 267 |
| DpnI | GATC | 3 cut(s) | 7, 416, 610 |
| DpnII | GATC | 3 cut(s) | 5, 414, 608 |
| EaeI | YGGCCR | 1 cut(s) | 300 |
| Eam1104I | CTCTTC | 2 cut(s) | 16, 215 |
| EarI | CTCTTC | 2 cut(s) | 16, 215 |
| Eco147I | AGGCCT | 1 cut(s) | 163 |
| Eco47I | GGWCC | 1 cut(s) | 659 |
| Eco57I | CTGAAG | 1 cut(s) | 22 |
| Eco88I | CYCGRG | 1 cut(s) | 157 |
| EcoO109I | RGGNCCY | 1 cut(s) | 659 |
| FaeI | CATG | 1 cut(s) | 298 |
| FatI | CATG | 1 cut(s) | 294 |
| FbaI | TGATCA | 1 cut(s) | 414 |
| FokI | GGATG | 2 cut(s) | 695, 740 |
| FspBI | CTAG | 3 cut(s) | 429, 638, 719 |
| GlaI | GCGC | 1 cut(s) | 278 |
| GsuI | CTGGAG | 1 cut(s) | 731 |
| HaeII | RGCGCY | 1 cut(s) | 280 |
| HaeIII | GGCC | 3 cut(s) | 163, 302, 344 |
| HhaI | GCGC | 1 cut(s) | 279 |
| Hin1II | CATG | 1 cut(s) | 298 |
| Hin6I | GCGC | 1 cut(s) | 277 |
| HinP1I | GCGC | 1 cut(s) | 277 |
| HincII | GTYRAC | 1 cut(s) | 525 |
| HindII | GTYRAC | 1 cut(s) | 525 |
| HindIII | AAGCTT | 1 cut(s) | 213 |
| HinfI | GANTC | 4 cut(s) | 181, 641, 704, 745 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy166II | GTNNAC | 3 cut(s) | 122, 525, 599 |
| Hpy188I | TCNGA | 1 cut(s) | 204 |
| Hpy188III | TCNNGA | 2 cut(s) | 638, 719 |
| Hpy8I | GTNNAC | 3 cut(s) | 122, 525, 599 |
| HpyAV | CCTTC | 3 cut(s) | 67, 166, 171 |
| HpyCH4III | ACNGT | 1 cut(s) | 28 |
| HpyCH4V | TGCA | 3 cut(s) | 74, 97, 169 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 185, 267 |
| Hsp92II | CATG | 1 cut(s) | 298 |
| HspAI | GCGC | 1 cut(s) | 277 |
| Ksp22I | TGATCA | 1 cut(s) | 414 |
| Kzo9I | GATC | 3 cut(s) | 5, 414, 608 |
| LmnI | GCTCC | 1 cut(s) | 250 |
| LpnPI | CCDG | 7 cut(s) | 259, 364, 377, 615, 642, 665, 695 |
| LweI | GCATC | 2 cut(s) | 198, 673 |
| MaeI | CTAG | 3 cut(s) | 429, 638, 719 |
| MaeIII | GTNAC | 2 cut(s) | 28, 705 |
| MalI | GATC | 3 cut(s) | 7, 416, 610 |
| MboI | GATC | 3 cut(s) | 5, 414, 608 |
| MboII | GAAGA | 5 cut(s) | 3, 28, 232, 250, 743 |
| MflI | RGATCY | 1 cut(s) | 5 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MluCI | AATT | 4 cut(s) | 207, 262, 437, 487 |
| MlyI | GAGTC | 1 cut(s) | 713 |
| MnlI | CCTC | 9 cut(s) | 19, 153, 232, 326, 356, 499, 557, 715, 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 198 |
| MseI | TTAA | 3 cut(s) | 69, 513, 543 |
| MslI | CAYNNNNRTG | 1 cut(s) | 696 |
| Mva1269I | GAATGC | 1 cut(s) | 338 |
| NdeII | GATC | 3 cut(s) | 5, 414, 608 |
| NheI | GCTAGC | 1 cut(s) | 428 |
| NlaIII | CATG | 1 cut(s) | 298 |
| NmuCI | GTSAC | 2 cut(s) | 28, 705 |
| PceI | AGGCCT | 1 cut(s) | 163 |
| PctI | GAATGC | 1 cut(s) | 338 |
| PdmI | GAANNNNTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 2 cut(s) | 181, 641 |
| PleI | GAGTC | 1 cut(s) | 712 |
| PpsI | GAGTC | 1 cut(s) | 712 |
| PpuMI | RGGWCCY | 1 cut(s) | 659 |
| Psp5II | RGGWCCY | 1 cut(s) | 659 |
| PspPI | GGNCC | 2 cut(s) | 343, 659 |
| PspPPI | RGGWCCY | 1 cut(s) | 659 |
| PstNI | CAGNNNCTG | 1 cut(s) | 94 |
| PsuI | RGATCY | 1 cut(s) | 5 |
| RsaI | GTAC | 1 cut(s) | 377 |
| RsaNI | GTAC | 1 cut(s) | 376 |
| RseI | CAYNNNNRTG | 1 cut(s) | 696 |
| SaqAI | TTAA | 3 cut(s) | 69, 513, 543 |
| Sau3AI | GATC | 3 cut(s) | 5, 414, 608 |
| Sau96I | GGNCC | 2 cut(s) | 343, 659 |
| ScaI | AGTACT | 1 cut(s) | 377 |
| SchI | GAGTC | 1 cut(s) | 713 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SfaNI | GCATC | 2 cut(s) | 198, 673 |
| SinI | GGWCC | 1 cut(s) | 659 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 696 |
| SmlI | CTYRAG | 1 cut(s) | 347 |
| SmoI | CTYRAG | 1 cut(s) | 347 |
| Sse9I | AATT | 4 cut(s) | 207, 262, 437, 487 |
| SseBI | AGGCCT | 1 cut(s) | 163 |
| SsiI | CCGC | 1 cut(s) | 15 |
| SspMI | CTAG | 3 cut(s) | 429, 638, 719 |
| StuI | AGGCCT | 1 cut(s) | 163 |
| TaaI | ACNGT | 1 cut(s) | 28 |
| TaqI | TCGA | 3 cut(s) | 192, 291, 453 |
| TasI | AATT | 4 cut(s) | 207, 262, 437, 487 |
| TatI | WGTACW | 1 cut(s) | 375 |
| TfiI | GAWTC | 2 cut(s) | 181, 641 |
| Tru1I | TTAA | 3 cut(s) | 69, 513, 543 |
| Tru9I | TTAA | 3 cut(s) | 69, 513, 543 |
| TscAI | CASTG | 2 cut(s) | 714, 747 |
| TseFI | GTSAC | 2 cut(s) | 28, 705 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 705 |
| TspDTI | ATGAA | 5 cut(s) | 49, 345, 450, 596, 744 |
| TspRI | CASTG | 2 cut(s) | 714, 747 |
| VpaK11BI | GGWCC | 1 cut(s) | 659 |
| XbaI | TCTAGA | 2 cut(s) | 637, 718 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 559 |
| XmnI | GAANNNNTTC | 1 cut(s) | 198 |
| XspI | CTAG | 3 cut(s) | 429, 638, 719 |
| ZrmI | AGTACT | 1 cut(s) | 377 |