ribonuclease H protein At1g65750-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 88 - 204 | 3.6e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2, 593 |
| AccB1I | GGYRCC | 3 cut(s) | 205, 502, 768 |
| AccBSI | CCGCTC | 1 cut(s) | 754 |
| AciI | CCGC | 2 cut(s) | 275, 754 |
| AclWI | GGATC | 1 cut(s) | 499 |
| AcsI | RAATTY | 5 cut(s) | 24, 40, 118, 145, 213 |
| AfeI | AGCGCT | 1 cut(s) | 177 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AgsI | TTSAA | 4 cut(s) | 56, 201, 251, 739 |
| AjnI | CCWGG | 1 cut(s) | 771 |
| AluBI | AGCT | 3 cut(s) | 35, 395, 680 |
| AluI | AGCT | 3 cut(s) | 35, 395, 680 |
| Alw21I | GWGCWC | 1 cut(s) | 784 |
| AlwI | GGATC | 1 cut(s) | 499 |
| Aor51HI | AGCGCT | 1 cut(s) | 177 |
| AoxI | GGCC | 1 cut(s) | 194 |
| ApoI | RAATTY | 5 cut(s) | 24, 40, 118, 145, 213 |
| AseI | ATTAAT | 1 cut(s) | 627 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 196, 761 |
| AspA2I | CCTAGG | 1 cut(s) | 506 |
| AspLEI | GCGC | 1 cut(s) | 178 |
| AsuC2I | CCSGG | 1 cut(s) | 291 |
| AsuHPI | GGTGA | 1 cut(s) | 127 |
| AvrII | CCTAGG | 1 cut(s) | 506 |
| BaeGI | GKGCMC | 1 cut(s) | 208 |
| BanI | GGYRCC | 3 cut(s) | 205, 502, 768 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 478, 510 |
| Bbv12I | GWGCWC | 1 cut(s) | 784 |
| BccI | CCATC | 2 cut(s) | 263, 551 |
| BceAI | ACGGC | 1 cut(s) | 649 |
| BciT130I | CCWGG | 1 cut(s) | 773 |
| BclI | TGATCA | 1 cut(s) | 76 |
| BcnI | CCSGG | 1 cut(s) | 291 |
| BfaI | CTAG | 2 cut(s) | 210, 507 |
| BfoI | RGCGCY | 1 cut(s) | 179 |
| BfuAI | ACCTGC | 2 cut(s) | 2, 593 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 383 |
| BlnI | CCTAGG | 1 cut(s) | 506 |
| Bme1390I | CCNGG | 2 cut(s) | 291, 773 |
| BmiI | GGNNCC | 3 cut(s) | 207, 504, 770 |
| BmrFI | CCNGG | 2 cut(s) | 291, 773 |
| BmsI | GCATC | 2 cut(s) | 335, 777 |
| BpuMI | CCSGG | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 2 cut(s) | 378, 506 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseBI | CCWGG | 1 cut(s) | 773 |
| BseDI | CCNNGG | 2 cut(s) | 378, 506 |
| BseGI | GGATG | 2 cut(s) | 350, 543 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseMII | CTCAG | 1 cut(s) | 512 |
| BseSI | GKGCMC | 1 cut(s) | 208 |
| BsgI | GTGCAG | 1 cut(s) | 690 |
| BshFI | GGCC | 1 cut(s) | 196 |
| BshNI | GGYRCC | 3 cut(s) | 205, 502, 768 |
| BsiHKAI | GWGCWC | 1 cut(s) | 784 |
| BsiSI | CCGG | 1 cut(s) | 291 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BsmI | GAATGC | 4 cut(s) | 93, 165, 189, 436 |
| BsnI | GGCC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 2 cut(s) | 208, 784 |
| Bsp143I | GATC | 2 cut(s) | 76, 491 |
| BspACI | CCGC | 2 cut(s) | 275, 754 |
| BspANI | GGCC | 1 cut(s) | 196 |
| BspCNI | CTCAG | 1 cut(s) | 511 |
| BspHI | TCATGA | 2 cut(s) | 217, 403 |
| BspLI | GGNNCC | 3 cut(s) | 207, 504, 770 |
| BspMI | ACCTGC | 2 cut(s) | 2, 593 |
| BspPI | GGATC | 1 cut(s) | 499 |
| BspT107I | GGYRCC | 3 cut(s) | 205, 502, 768 |
| BsrBI | CCGCTC | 1 cut(s) | 754 |
| BssECI | CCNNGG | 2 cut(s) | 378, 506 |
| BssMI | GATC | 2 cut(s) | 76, 491 |
| BssT1I | CCWWGG | 2 cut(s) | 378, 506 |
| Bst2UI | CCWGG | 1 cut(s) | 773 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| Bst6I | CTCTTC | 1 cut(s) | 556 |
| BstC8I | GCNNGC | 1 cut(s) | 33 |
| BstDEI | CTNAG | 2 cut(s) | 170, 498 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 2 cut(s) | 350, 543 |
| BstH2I | RGCGCY | 1 cut(s) | 179 |
| BstHHI | GCGC | 1 cut(s) | 178 |
| BstKTI | GATC | 2 cut(s) | 79, 494 |
| BstMBI | GATC | 2 cut(s) | 76, 491 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 184, 193, 383, 392, 677, 766 |
| BstNI | CCWGG | 1 cut(s) | 773 |
| BstSCI | CCNGG | 2 cut(s) | 289, 771 |
| BstSLI | GKGCMC | 1 cut(s) | 208 |
| BstX2I | RGATCY | 1 cut(s) | 491 |
| BstYI | RGATCY | 1 cut(s) | 491 |
| BsuRI | GGCC | 1 cut(s) | 196 |
| BtsCI | GGATG | 2 cut(s) | 350, 543 |
| BtsI | GCAGTG | 1 cut(s) | 477 |
| BtsIMutI | CAGTG | 2 cut(s) | 264, 477 |
| BveI | ACCTGC | 2 cut(s) | 2, 593 |
| Cac8I | GCNNGC | 1 cut(s) | 33 |
| CciI | TCATGA | 2 cut(s) | 217, 403 |
| CfoI | GCGC | 1 cut(s) | 178 |
| CviAII | CATG | 5 cut(s) | 188, 218, 404, 556, 733 |
| CviJI | RGCY | 7 cut(s) | 35, 196, 299, 395, 419, 680, 703 |
| CviKI_1 | RGCY | 7 cut(s) | 35, 196, 299, 395, 419, 680, 703 |
| DdeI | CTNAG | 2 cut(s) | 170, 498 |
| DpnI | GATC | 2 cut(s) | 78, 493 |
| DpnII | GATC | 2 cut(s) | 76, 491 |
| Eam1104I | CTCTTC | 1 cut(s) | 556 |
| EarI | CTCTTC | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 2 cut(s) | 378, 506 |
| Eco147I | AGGCCT | 1 cut(s) | 196 |
| Eco47III | AGCGCT | 1 cut(s) | 177 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 54 |
| EcoRI | GAATTC | 2 cut(s) | 118, 213 |
| EcoRII | CCWGG | 1 cut(s) | 771 |
| EcoT14I | CCWWGG | 2 cut(s) | 378, 506 |
| EcoT22I | ATGCAT | 1 cut(s) | 189 |
| ErhI | CCWWGG | 2 cut(s) | 378, 506 |
| FaeI | CATG | 5 cut(s) | 191, 221, 407, 559, 736 |
| FatI | CATG | 5 cut(s) | 187, 217, 403, 555, 732 |
| FauNDI | CATATG | 1 cut(s) | 811 |
| FbaI | TGATCA | 1 cut(s) | 76 |
| FokI | GGATG | 2 cut(s) | 357, 530 |
| FspBI | CTAG | 2 cut(s) | 210, 507 |
| GlaI | GCGC | 1 cut(s) | 177 |
| HaeII | RGCGCY | 1 cut(s) | 179 |
| HaeIII | GGCC | 1 cut(s) | 196 |
| HapII | CCGG | 1 cut(s) | 291 |
| HhaI | GCGC | 1 cut(s) | 178 |
| Hin1II | CATG | 5 cut(s) | 191, 221, 407, 559, 736 |
| Hin6I | GCGC | 1 cut(s) | 176 |
| HinP1I | GCGC | 1 cut(s) | 176 |
| HincII | GTYRAC | 1 cut(s) | 262 |
| HindII | GTYRAC | 1 cut(s) | 262 |
| HinfI | GANTC | 2 cut(s) | 458, 653 |
| HpaI | GTTAAC | 1 cut(s) | 262 |
| HpaII | CCGG | 1 cut(s) | 291 |
| HphI | GGTGA | 1 cut(s) | 127 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 262 |
| Hpy188I | TCNGA | 1 cut(s) | 786 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 404 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 262 |
| Hpy99I | CGWCG | 1 cut(s) | 746 |
| HpyAV | CCTTC | 3 cut(s) | 50, 186, 207 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 6 cut(s) | 103, 165, 187, 475, 559, 671 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 184, 193, 383, 392, 677, 766 |
| HpyF3I | CTNAG | 2 cut(s) | 170, 498 |
| Hsp92II | CATG | 5 cut(s) | 191, 221, 407, 559, 736 |
| HspAI | GCGC | 1 cut(s) | 176 |
| Ksp22I | TGATCA | 1 cut(s) | 76 |
| KspAI | GTTAAC | 1 cut(s) | 262 |
| Kzo9I | GATC | 2 cut(s) | 76, 491 |
| LpnPI | CCDG | 8 cut(s) | 285, 304, 485, 581, 588, 751, 758, 785 |
| LweI | GCATC | 2 cut(s) | 335, 777 |
| MaeI | CTAG | 2 cut(s) | 210, 507 |
| MaeIII | GTNAC | 2 cut(s) | 320, 726 |
| MalI | GATC | 2 cut(s) | 78, 493 |
| MbiI | CCGCTC | 1 cut(s) | 754 |
| MboI | GATC | 2 cut(s) | 76, 491 |
| MboII | GAAGA | 4 cut(s) | 486, 543, 599, 714 |
| MflI | RGATCY | 1 cut(s) | 491 |
| MhlI | GDGCHC | 2 cut(s) | 208, 784 |
| MluCI | AATT | 7 cut(s) | 24, 40, 118, 145, 213, 532, 709 |
| MnlI | CCTC | 6 cut(s) | 106, 214, 376, 420, 557, 769 |
| Mph1103I | ATGCAT | 1 cut(s) | 189 |
| MroXI | GAANNNNTTC | 2 cut(s) | 196, 761 |
| MseI | TTAA | 6 cut(s) | 44, 87, 143, 255, 261, 627 |
| MslI | CAYNNNNRTG | 2 cut(s) | 579, 814 |
| MspI | CCGG | 1 cut(s) | 291 |
| MspR9I | CCNGG | 2 cut(s) | 291, 773 |
| Mva1269I | GAATGC | 4 cut(s) | 93, 165, 189, 436 |
| MvaI | CCWGG | 1 cut(s) | 773 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 184, 193, 383, 392, 677, 766 |
| NciI | CCSGG | 1 cut(s) | 291 |
| NdeI | CATATG | 1 cut(s) | 811 |
| NdeII | GATC | 2 cut(s) | 76, 491 |
| NlaIII | CATG | 5 cut(s) | 191, 221, 407, 559, 736 |
| NlaIV | GGNNCC | 3 cut(s) | 207, 504, 770 |
| NmuCI | GTSAC | 2 cut(s) | 320, 726 |
| NsiI | ATGCAT | 1 cut(s) | 189 |
| PagI | TCATGA | 2 cut(s) | 217, 403 |
| PceI | AGGCCT | 1 cut(s) | 196 |
| PctI | GAATGC | 4 cut(s) | 93, 165, 189, 436 |
| PdmI | GAANNNNTTC | 2 cut(s) | 196, 761 |
| PfeI | GAWTC | 2 cut(s) | 458, 653 |
| PshBI | ATTAAT | 1 cut(s) | 627 |
| Psp6I | CCWGG | 1 cut(s) | 771 |
| PspGI | CCWGG | 1 cut(s) | 771 |
| PspN4I | GGNNCC | 3 cut(s) | 207, 504, 770 |
| PsuI | RGATCY | 1 cut(s) | 491 |
| RseI | CAYNNNNRTG | 2 cut(s) | 579, 814 |
| SaqAI | TTAA | 6 cut(s) | 44, 87, 143, 255, 261, 627 |
| Sau3AI | GATC | 2 cut(s) | 76, 491 |
| ScrFI | CCNGG | 2 cut(s) | 291, 773 |
| SduI | GDGCHC | 2 cut(s) | 208, 784 |
| SfaNI | GCATC | 2 cut(s) | 335, 777 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 579, 814 |
| Sse9I | AATT | 7 cut(s) | 24, 40, 118, 145, 213, 532, 709 |
| SseBI | AGGCCT | 1 cut(s) | 196 |
| SsiI | CCGC | 2 cut(s) | 275, 754 |
| SspMI | CTAG | 2 cut(s) | 210, 507 |
| StuI | AGGCCT | 1 cut(s) | 196 |
| StyD4I | CCNGG | 2 cut(s) | 289, 771 |
| StyI | CCWWGG | 2 cut(s) | 378, 506 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TaqI | TCGA | 2 cut(s) | 37, 715 |
| TasI | AATT | 7 cut(s) | 24, 40, 118, 145, 213, 532, 709 |
| TfiI | GAWTC | 2 cut(s) | 458, 653 |
| Tru1I | TTAA | 6 cut(s) | 44, 87, 143, 255, 261, 627 |
| Tru9I | TTAA | 6 cut(s) | 44, 87, 143, 255, 261, 627 |
| TscAI | CASTG | 2 cut(s) | 271, 477 |
| TseFI | GTSAC | 2 cut(s) | 320, 726 |
| Tsp45I | GTSAC | 2 cut(s) | 320, 726 |
| TspDTI | ATGAA | 4 cut(s) | 171, 206, 392, 632 |
| TspRI | CASTG | 2 cut(s) | 271, 477 |
| VspI | ATTAAT | 1 cut(s) | 627 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 54 |
| XapI | RAATTY | 5 cut(s) | 24, 40, 118, 145, 213 |
| XmaJI | CCTAGG | 1 cut(s) | 506 |
| XmnI | GAANNNNTTC | 2 cut(s) | 196, 761 |
| XspI | CTAG | 2 cut(s) | 210, 507 |
| Zsp2I | ATGCAT | 1 cut(s) | 189 |