ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 226 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 368 |
| AclWI | GGATC | 2 cut(s) | 276, 563 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcuI | CTGAAG | 1 cut(s) | 504 |
| AcyI | GRCGYC | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 192, 368 |
| AflII | CTTAAG | 2 cut(s) | 149, 157 |
| AgsI | TTSAA | 4 cut(s) | 45, 460, 489, 590 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 125 |
| AluBI | AGCT | 3 cut(s) | 213, 500, 593 |
| AluI | AGCT | 3 cut(s) | 213, 500, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 215 |
| Alw26I | GTCTC | 3 cut(s) | 133, 560, 621 |
| AlwI | GGATC | 2 cut(s) | 276, 563 |
| AoxI | GGCC | 1 cut(s) | 153 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AspS9I | GGNCC | 3 cut(s) | 4, 119, 238 |
| AsuHPI | GGTGA | 1 cut(s) | 458 |
| AvaII | GGWCC | 3 cut(s) | 4, 119, 238 |
| BanII | GRGCYC | 1 cut(s) | 215 |
| Bbv12I | GWGCWC | 1 cut(s) | 215 |
| BccI | CCATC | 1 cut(s) | 443 |
| BceAI | ACGGC | 1 cut(s) | 211 |
| BclI | TGATCA | 1 cut(s) | 96 |
| BcoDI | GTCTC | 3 cut(s) | 133, 560, 621 |
| BfaI | CTAG | 2 cut(s) | 246, 540 |
| BfrI | CTTAAG | 2 cut(s) | 149, 157 |
| Bme18I | GGWCC | 3 cut(s) | 4, 119, 238 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 125 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 119, 238 |
| BmiI | GGNNCC | 1 cut(s) | 408 |
| BmsI | GCATC | 2 cut(s) | 39, 134 |
| BpuEI | CTTGAG | 1 cut(s) | 199 |
| BsaHI | GRCGYC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| BsaWI | WCCGGW | 1 cut(s) | 235 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 192, 368 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 2 cut(s) | 82, 358 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 192, 368 |
| BseMII | CTCAG | 1 cut(s) | 614 |
| BshFI | GGCC | 1 cut(s) | 155 |
| BsiHKAI | GWGCWC | 1 cut(s) | 215 |
| BsiSI | CCGG | 1 cut(s) | 236 |
| BslFI | GGGAC | 2 cut(s) | 343, 410 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 192, 368 |
| BsmAI | GTCTC | 3 cut(s) | 133, 560, 621 |
| BsmFI | GGGAC | 2 cut(s) | 343, 410 |
| BsmI | GAATGC | 1 cut(s) | 139 |
| BsnI | GGCC | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 1 cut(s) | 215 |
| Bsp143I | GATC | 4 cut(s) | 63, 96, 268, 568 |
| BspANI | GGCC | 1 cut(s) | 155 |
| BspCNI | CTCAG | 1 cut(s) | 613 |
| BspLI | GGNNCC | 1 cut(s) | 408 |
| BspPI | GGATC | 2 cut(s) | 276, 563 |
| BspTI | CTTAAG | 2 cut(s) | 149, 157 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 4 cut(s) | 63, 96, 268, 568 |
| BssNI | GRCGYC | 1 cut(s) | 332 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst4CI | ACNGT | 3 cut(s) | 195, 401, 583 |
| BstACI | GRCGYC | 1 cut(s) | 332 |
| BstAFI | CTTAAG | 2 cut(s) | 149, 157 |
| BstC8I | GCNNGC | 1 cut(s) | 385 |
| BstDEI | CTNAG | 2 cut(s) | 319, 600 |
| BstF5I | GGATG | 2 cut(s) | 82, 358 |
| BstKTI | GATC | 4 cut(s) | 66, 99, 271, 571 |
| BstMAI | GTCTC | 3 cut(s) | 133, 560, 621 |
| BstMBI | GATC | 4 cut(s) | 63, 96, 268, 568 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 331 |
| BstX2I | RGATCY | 1 cut(s) | 268 |
| BstYI | RGATCY | 1 cut(s) | 268 |
| BsuRI | GGCC | 1 cut(s) | 155 |
| BtsCI | GGATG | 2 cut(s) | 82, 358 |
| BtsIMutI | CAGTG | 1 cut(s) | 406 |
| Cac8I | GCNNGC | 1 cut(s) | 385 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 119, 238 |
| CseI | GACGC | 1 cut(s) | 340 |
| CviAII | CATG | 1 cut(s) | 116 |
| CviJI | RGCY | 5 cut(s) | 155, 213, 407, 500, 593 |
| CviKI_1 | RGCY | 5 cut(s) | 155, 213, 407, 500, 593 |
| DdeI | CTNAG | 2 cut(s) | 319, 600 |
| DpnI | GATC | 4 cut(s) | 65, 98, 270, 570 |
| DpnII | GATC | 4 cut(s) | 63, 96, 268, 568 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 226 |
| DriI | GACNNNNNGTC | 1 cut(s) | 125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 226 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 125 |
| Ecl136II | GAGCTC | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco147I | AGGCCT | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 215 |
| Eco47I | GGWCC | 3 cut(s) | 4, 119, 238 |
| Eco53kI | GAGCTC | 1 cut(s) | 213 |
| Eco57I | CTGAAG | 1 cut(s) | 504 |
| EcoICRI | GAGCTC | 1 cut(s) | 213 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| EcoT38I | GRGCYC | 1 cut(s) | 215 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaeI | CATG | 1 cut(s) | 119 |
| FaqI | GGGAC | 2 cut(s) | 343, 410 |
| FatI | CATG | 1 cut(s) | 115 |
| FauNDI | CATATG | 1 cut(s) | 278 |
| FbaI | TGATCA | 1 cut(s) | 96 |
| FokI | GGATG | 2 cut(s) | 89, 345 |
| FriOI | GRGCYC | 1 cut(s) | 215 |
| FspBI | CTAG | 2 cut(s) | 246, 540 |
| HaeIII | GGCC | 1 cut(s) | 155 |
| HapII | CCGG | 1 cut(s) | 236 |
| HgaI | GACGC | 1 cut(s) | 340 |
| Hin1I | GRCGYC | 1 cut(s) | 332 |
| Hin1II | CATG | 1 cut(s) | 119 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HindIII | AAGCTT | 1 cut(s) | 591 |
| HinfI | GANTC | 4 cut(s) | 14, 112, 533, 553 |
| HpaII | CCGG | 1 cut(s) | 236 |
| HphI | GGTGA | 1 cut(s) | 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 166 |
| Hpy188I | TCNGA | 3 cut(s) | 285, 523, 603 |
| Hpy188III | TCNNGA | 3 cut(s) | 130, 208, 314 |
| Hpy8I | GTNNAC | 1 cut(s) | 166 |
| HpyAV | CCTTC | 2 cut(s) | 367, 528 |
| HpyCH4III | ACNGT | 3 cut(s) | 195, 401, 583 |
| HpyCH4IV | ACGT | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 4 cut(s) | 30, 53, 199, 387 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 331 |
| HpyF3I | CTNAG | 2 cut(s) | 319, 600 |
| HpySE526I | ACGT | 1 cut(s) | 168 |
| Hsp92I | GRCGYC | 1 cut(s) | 332 |
| Hsp92II | CATG | 1 cut(s) | 119 |
| Ksp22I | TGATCA | 1 cut(s) | 96 |
| Kzo9I | GATC | 4 cut(s) | 63, 96, 268, 568 |
| LmnI | GCTCC | 2 cut(s) | 412, 505 |
| LpnPI | CCDG | 5 cut(s) | 221, 249, 299, 311, 397 |
| LweI | GCATC | 2 cut(s) | 39, 134 |
| MaeI | CTAG | 2 cut(s) | 246, 540 |
| MaeII | ACGT | 1 cut(s) | 168 |
| MaeIII | GTNAC | 2 cut(s) | 169, 260 |
| MalI | GATC | 4 cut(s) | 65, 98, 270, 570 |
| MboI | GATC | 4 cut(s) | 63, 96, 268, 568 |
| MboII | GAAGA | 3 cut(s) | 153, 477, 588 |
| MflI | RGATCY | 1 cut(s) | 268 |
| MhlI | GDGCHC | 1 cut(s) | 215 |
| MluCI | AATT | 1 cut(s) | 35 |
| MlyI | GAGTC | 2 cut(s) | 8, 562 |
| MnlI | CCTC | 1 cut(s) | 632 |
| MseI | TTAA | 4 cut(s) | 150, 158, 471, 631 |
| MspCI | CTTAAG | 2 cut(s) | 149, 157 |
| MspI | CCGG | 1 cut(s) | 236 |
| Mva1269I | GAATGC | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 331 |
| NdeI | CATATG | 1 cut(s) | 278 |
| NdeII | GATC | 4 cut(s) | 63, 96, 268, 568 |
| NlaIII | CATG | 1 cut(s) | 119 |
| NlaIV | GGNNCC | 1 cut(s) | 408 |
| NmuCI | GTSAC | 2 cut(s) | 169, 260 |
| PceI | AGGCCT | 1 cut(s) | 155 |
| PctI | GAATGC | 1 cut(s) | 139 |
| PfeI | GAWTC | 2 cut(s) | 112, 533 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 368 |
| PleI | GAGTC | 2 cut(s) | 8, 561 |
| PpsI | GAGTC | 2 cut(s) | 8, 561 |
| Psp124BI | GAGCTC | 1 cut(s) | 215 |
| PspN4I | GGNNCC | 1 cut(s) | 408 |
| PspPI | GGNCC | 3 cut(s) | 4, 119, 238 |
| PsuI | RGATCY | 1 cut(s) | 268 |
| SacI | GAGCTC | 1 cut(s) | 215 |
| SaqAI | TTAA | 4 cut(s) | 150, 158, 471, 631 |
| Sau3AI | GATC | 4 cut(s) | 63, 96, 268, 568 |
| Sau96I | GGNCC | 3 cut(s) | 4, 119, 238 |
| SchI | GAGTC | 2 cut(s) | 8, 562 |
| SduI | GDGCHC | 1 cut(s) | 215 |
| SetI | ASST | 5 cut(s) | 51, 171, 215, 502, 595 |
| SfaNI | GCATC | 2 cut(s) | 39, 134 |
| SinI | GGWCC | 3 cut(s) | 4, 119, 238 |
| SmlI | CTYRAG | 3 cut(s) | 149, 157, 214 |
| SmoI | CTYRAG | 3 cut(s) | 149, 157, 214 |
| Sse9I | AATT | 1 cut(s) | 35 |
| SseBI | AGGCCT | 1 cut(s) | 155 |
| SspI | AATATT | 2 cut(s) | 466, 629 |
| SspMI | CTAG | 2 cut(s) | 246, 540 |
| SstI | GAGCTC | 1 cut(s) | 215 |
| StuI | AGGCCT | 1 cut(s) | 155 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaaI | ACNGT | 3 cut(s) | 195, 401, 583 |
| TaiI | ACGT | 1 cut(s) | 171 |
| TaqI | TCGA | 2 cut(s) | 131, 139 |
| TasI | AATT | 1 cut(s) | 35 |
| TfiI | GAWTC | 2 cut(s) | 112, 533 |
| Tru1I | TTAA | 4 cut(s) | 150, 158, 471, 631 |
| Tru9I | TTAA | 4 cut(s) | 150, 158, 471, 631 |
| TscAI | CASTG | 1 cut(s) | 406 |
| TseFI | GTSAC | 2 cut(s) | 169, 260 |
| Tsp45I | GTSAC | 2 cut(s) | 169, 260 |
| TspDTI | ATGAA | 2 cut(s) | 104, 347 |
| TspRI | CASTG | 1 cut(s) | 406 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 368 |
| Vha464I | CTTAAG | 2 cut(s) | 149, 157 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 119, 238 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XspI | CTAG | 2 cut(s) | 246, 540 |