ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 247 |
| AclWI | GGATC | 2 cut(s) | 177, 431 |
| AcoI | YGGCCR | 1 cut(s) | 504 |
| AcsI | RAATTY | 1 cut(s) | 596 |
| AcuI | CTGAAG | 1 cut(s) | 463 |
| AfaI | GTAC | 1 cut(s) | 431 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 73, 165 |
| AflII | CTTAAG | 1 cut(s) | 125 |
| AgsI | TTSAA | 4 cut(s) | 288, 312, 466, 797 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 675 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 3 cut(s) | 686, 737, 800 |
| AluI | AGCT | 3 cut(s) | 686, 737, 800 |
| Alw26I | GTCTC | 2 cut(s) | 371, 746 |
| AlwI | GGATC | 2 cut(s) | 177, 431 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 374 |
| Ama87I | CYCGRG | 1 cut(s) | 488 |
| AoxI | GGCC | 1 cut(s) | 504 |
| ApeKI | GCWGC | 3 cut(s) | 361, 364, 686 |
| ApoI | RAATTY | 1 cut(s) | 596 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 450 |
| AspS9I | GGNCC | 1 cut(s) | 236 |
| AsuHPI | GGTGA | 3 cut(s) | 233, 671, 742 |
| AvaI | CYCGRG | 1 cut(s) | 488 |
| AvaII | GGWCC | 1 cut(s) | 236 |
| AxyI | CCTNAGG | 1 cut(s) | 846 |
| BaeGI | GKGCMC | 1 cut(s) | 635 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 147, 180 |
| BbvI | GCAGC | 3 cut(s) | 348, 376, 673 |
| BccI | CCATC | 2 cut(s) | 137, 410 |
| BcoDI | GTCTC | 2 cut(s) | 371, 746 |
| BfaI | CTAG | 1 cut(s) | 5 |
| BfmI | CTRYAG | 1 cut(s) | 362 |
| BfrI | CTTAAG | 1 cut(s) | 125 |
| BfuAI | ACCTGC | 1 cut(s) | 247 |
| BisI | GCNGC | 3 cut(s) | 362, 365, 687 |
| BlsI | GCNGC | 3 cut(s) | 363, 366, 688 |
| Bme18I | GGWCC | 1 cut(s) | 236 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 675 |
| BmeT110I | CYCGRG | 1 cut(s) | 488 |
| BmgT120I | GGNCC | 1 cut(s) | 236 |
| BmsI | GCATC | 1 cut(s) | 92 |
| BpmI | CTGGAG | 1 cut(s) | 213 |
| Bpu10I | CCTNAGC | 1 cut(s) | 243 |
| BpuEI | CTTGAG | 1 cut(s) | 730 |
| Bsa29I | ATCGAT | 1 cut(s) | 269 |
| BsaBI | GATNNNNATC | 1 cut(s) | 767 |
| BsaJI | CCNNGG | 3 cut(s) | 159, 337, 471 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 73, 165 |
| Bse1I | ACTGG | 3 cut(s) | 144, 223, 732 |
| Bse21I | CCTNAGG | 1 cut(s) | 846 |
| Bse8I | GATNNNNATC | 1 cut(s) | 767 |
| BseCI | ATCGAT | 1 cut(s) | 269 |
| BseDI | CCNNGG | 3 cut(s) | 159, 337, 471 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseJI | GATNNNNATC | 1 cut(s) | 767 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 73, 165 |
| BseMII | CTCAG | 2 cut(s) | 366, 615 |
| BseNI | ACTGG | 3 cut(s) | 144, 223, 732 |
| BseSI | GKGCMC | 1 cut(s) | 635 |
| BseXI | GCAGC | 3 cut(s) | 348, 376, 673 |
| BseYI | CCCAGC | 1 cut(s) | 682 |
| BshFI | GGCC | 1 cut(s) | 506 |
| BshVI | ATCGAT | 1 cut(s) | 269 |
| BsiHKCI | CYCGRG | 1 cut(s) | 488 |
| BslFI | GGGAC | 3 cut(s) | 150, 355, 471 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 73, 165 |
| BsmAI | GTCTC | 2 cut(s) | 371, 746 |
| BsmFI | GGGAC | 3 cut(s) | 150, 355, 471 |
| BsmI | GAATGC | 1 cut(s) | 608 |
| BsnI | GGCC | 1 cut(s) | 506 |
| BsoBI | CYCGRG | 1 cut(s) | 488 |
| Bsp1286I | GDGCHC | 1 cut(s) | 635 |
| Bsp143I | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| Bsp19I | CCATGG | 1 cut(s) | 471 |
| BspANI | GGCC | 1 cut(s) | 506 |
| BspCNI | CTCAG | 2 cut(s) | 367, 614 |
| BspDI | ATCGAT | 1 cut(s) | 269 |
| BspMAI | CTGCAG | 1 cut(s) | 366 |
| BspMI | ACCTGC | 1 cut(s) | 247 |
| BspPI | GGATC | 2 cut(s) | 177, 431 |
| BspTI | CTTAAG | 1 cut(s) | 125 |
| BsrI | ACTGG | 3 cut(s) | 144, 223, 732 |
| BssECI | CCNNGG | 3 cut(s) | 159, 337, 471 |
| BssMI | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| BssT1I | CCWWGG | 3 cut(s) | 159, 337, 471 |
| Bst4CI | ACNGT | 1 cut(s) | 589 |
| Bst6I | CTCTTC | 1 cut(s) | 3 |
| BstAFI | CTTAAG | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 1 cut(s) | 369 |
| BstDEI | CTNAG | 4 cut(s) | 243, 375, 601, 846 |
| BstDSI | CCRYGG | 1 cut(s) | 471 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 5 cut(s) | 172, 388, 439, 541, 771 |
| BstMAI | GTCTC | 2 cut(s) | 371, 746 |
| BstMBI | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| BstSFI | CTRYAG | 1 cut(s) | 362 |
| BstSLI | GKGCMC | 1 cut(s) | 635 |
| BstV1I | GCAGC | 3 cut(s) | 348, 376, 673 |
| BstX2I | RGATCY | 1 cut(s) | 436 |
| BstYI | RGATCY | 1 cut(s) | 436 |
| Bsu15I | ATCGAT | 1 cut(s) | 269 |
| Bsu36I | CCTNAGG | 1 cut(s) | 846 |
| BsuRI | GGCC | 1 cut(s) | 506 |
| BsuTUI | ATCGAT | 1 cut(s) | 269 |
| BtgI | CCRYGG | 1 cut(s) | 471 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| BtsI | GCAGTG | 1 cut(s) | 356 |
| BtsIMutI | CAGTG | 1 cut(s) | 356 |
| BveI | ACCTGC | 1 cut(s) | 247 |
| Cac8I | GCNNGC | 1 cut(s) | 369 |
| CaiI | CAGNNNCTG | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 1 cut(s) | 236 |
| ClaI | ATCGAT | 1 cut(s) | 269 |
| Csp6I | GTAC | 1 cut(s) | 430 |
| CviAII | CATG | 5 cut(s) | 70, 256, 472, 623, 833 |
| CviQI | GTAC | 1 cut(s) | 430 |
| DdeI | CTNAG | 4 cut(s) | 243, 375, 601, 846 |
| DpnI | GATC | 5 cut(s) | 171, 387, 438, 540, 770 |
| DpnII | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| DriI | GACNNNNNGTC | 1 cut(s) | 675 |
| EaeI | YGGCCR | 1 cut(s) | 504 |
| Eam1104I | CTCTTC | 1 cut(s) | 3 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 675 |
| EarI | CTCTTC | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 3 cut(s) | 159, 337, 471 |
| Eco32I | GATATC | 1 cut(s) | 64 |
| Eco47I | GGWCC | 1 cut(s) | 236 |
| Eco57I | CTGAAG | 1 cut(s) | 463 |
| Eco81I | CCTNAGG | 1 cut(s) | 846 |
| Eco88I | CYCGRG | 1 cut(s) | 488 |
| EcoRI | GAATTC | 1 cut(s) | 596 |
| EcoRV | GATATC | 1 cut(s) | 64 |
| EcoT14I | CCWWGG | 3 cut(s) | 159, 337, 471 |
| ErhI | CCWWGG | 3 cut(s) | 159, 337, 471 |
| FaeI | CATG | 5 cut(s) | 73, 259, 475, 626, 836 |
| FaqI | GGGAC | 3 cut(s) | 150, 355, 471 |
| FatI | CATG | 5 cut(s) | 69, 255, 471, 622, 832 |
| Fnu4HI | GCNGC | 3 cut(s) | 362, 365, 687 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 3 cut(s) | 362, 365, 687 |
| FspBI | CTAG | 1 cut(s) | 5 |
| GluI | GCNGC | 3 cut(s) | 362, 365, 687 |
| GsaI | CCCAGC | 1 cut(s) | 686 |
| GsuI | CTGGAG | 1 cut(s) | 213 |
| HaeIII | GGCC | 1 cut(s) | 506 |
| Hin1II | CATG | 5 cut(s) | 73, 259, 475, 626, 836 |
| HindIII | AAGCTT | 2 cut(s) | 735, 798 |
| HinfI | GANTC | 1 cut(s) | 676 |
| HphI | GGTGA | 3 cut(s) | 233, 671, 742 |
| Hpy166II | GTNNAC | 3 cut(s) | 328, 430, 788 |
| Hpy188I | TCNGA | 7 cut(s) | 88, 300, 415, 482, 532, 604, 826 |
| Hpy188III | TCNNGA | 4 cut(s) | 192, 455, 488, 542 |
| Hpy8I | GTNNAC | 3 cut(s) | 328, 430, 788 |
| HpyAV | CCTTC | 1 cut(s) | 67 |
| HpyCH4III | ACNGT | 1 cut(s) | 589 |
| HpyCH4V | TGCA | 4 cut(s) | 364, 517, 653, 689 |
| HpyF3I | CTNAG | 4 cut(s) | 243, 375, 601, 846 |
| Hsp92II | CATG | 5 cut(s) | 73, 259, 475, 626, 836 |
| Kzo9I | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| LmnI | GCTCC | 1 cut(s) | 544 |
| Lsp1109I | GCAGC | 3 cut(s) | 348, 376, 673 |
| LweI | GCATC | 1 cut(s) | 92 |
| MaeI | CTAG | 1 cut(s) | 5 |
| MaeIII | GTNAC | 2 cut(s) | 523, 677 |
| MalI | GATC | 5 cut(s) | 171, 387, 438, 540, 770 |
| MboI | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| MboII | GAAGA | 4 cut(s) | 20, 398, 605, 778 |
| MflI | RGATCY | 1 cut(s) | 436 |
| MhlI | GDGCHC | 1 cut(s) | 635 |
| MluCI | AATT | 2 cut(s) | 596, 636 |
| MlyI | GAGTC | 1 cut(s) | 685 |
| MmeI | TCCRAC | 1 cut(s) | 214 |
| MnlI | CCTC | 3 cut(s) | 188, 598, 766 |
| MroXI | GAANNNNTTC | 1 cut(s) | 450 |
| MseI | TTAA | 3 cut(s) | 42, 126, 714 |
| MspA1I | CMGCKG | 1 cut(s) | 686 |
| MspCI | CTTAAG | 1 cut(s) | 125 |
| Mva1269I | GAATGC | 1 cut(s) | 608 |
| NcoI | CCATGG | 1 cut(s) | 471 |
| NdeII | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| NlaIII | CATG | 5 cut(s) | 73, 259, 475, 626, 836 |
| NmuCI | GTSAC | 2 cut(s) | 523, 677 |
| PctI | GAATGC | 1 cut(s) | 608 |
| PdmI | GAANNNNTTC | 1 cut(s) | 450 |
| PkrI | GCNGC | 3 cut(s) | 363, 366, 688 |
| PleI | GAGTC | 1 cut(s) | 684 |
| PpsI | GAGTC | 1 cut(s) | 684 |
| PspFI | CCCAGC | 1 cut(s) | 682 |
| PspPI | GGNCC | 1 cut(s) | 236 |
| PstI | CTGCAG | 1 cut(s) | 366 |
| PstNI | CAGNNNCTG | 1 cut(s) | 374 |
| PsuI | RGATCY | 1 cut(s) | 436 |
| PvuII | CAGCTG | 1 cut(s) | 686 |
| RsaI | GTAC | 1 cut(s) | 431 |
| RsaNI | GTAC | 1 cut(s) | 430 |
| SaqAI | TTAA | 3 cut(s) | 42, 126, 714 |
| SatI | GCNGC | 3 cut(s) | 362, 365, 687 |
| Sau3AI | GATC | 5 cut(s) | 169, 385, 436, 538, 768 |
| Sau96I | GGNCC | 1 cut(s) | 236 |
| SchI | GAGTC | 1 cut(s) | 685 |
| SduI | GDGCHC | 1 cut(s) | 635 |
| SetI | ASST | 9 cut(s) | 161, 241, 376, 502, 581, 688, 739, 793, 802 |
| SfaNI | GCATC | 1 cut(s) | 92 |
| SfcI | CTRYAG | 1 cut(s) | 362 |
| SinI | GGWCC | 1 cut(s) | 236 |
| SmlI | CTYRAG | 2 cut(s) | 125, 745 |
| SmoI | CTYRAG | 2 cut(s) | 125, 745 |
| Sse9I | AATT | 2 cut(s) | 596, 636 |
| SspI | AATATT | 1 cut(s) | 817 |
| SspMI | CTAG | 1 cut(s) | 5 |
| StyI | CCWWGG | 3 cut(s) | 159, 337, 471 |
| TaaI | ACNGT | 1 cut(s) | 589 |
| TaqI | TCGA | 3 cut(s) | 269, 591, 771 |
| TasI | AATT | 2 cut(s) | 596, 636 |
| Tru1I | TTAA | 3 cut(s) | 42, 126, 714 |
| Tru9I | TTAA | 3 cut(s) | 42, 126, 714 |
| TscAI | CASTG | 1 cut(s) | 363 |
| TseFI | GTSAC | 2 cut(s) | 523, 677 |
| TseI | GCWGC | 3 cut(s) | 361, 364, 686 |
| Tsp45I | GTSAC | 2 cut(s) | 523, 677 |
| TspDTI | ATGAA | 7 cut(s) | 86, 244, 340, 571, 611, 660, 779 |
| TspRI | CASTG | 1 cut(s) | 363 |
| Vha464I | CTTAAG | 1 cut(s) | 125 |
| VpaK11BI | GGWCC | 1 cut(s) | 236 |
| XapI | RAATTY | 1 cut(s) | 596 |
| XmnI | GAANNNNTTC | 1 cut(s) | 450 |
| XspI | CTAG | 1 cut(s) | 5 |