ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 985 |
| AccB1I | GGYRCC | 1 cut(s) | 61 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 783 |
| AccBSI | CCGCTC | 2 cut(s) | 220, 1229 |
| AccII | CGCG | 1 cut(s) | 240 |
| AccIII | TCCGGA | 1 cut(s) | 921 |
| AclWI | GGATC | 1 cut(s) | 913 |
| AcoI | YGGCCR | 1 cut(s) | 6 |
| AcsI | RAATTY | 2 cut(s) | 347, 1379 |
| AcuI | CTGAAG | 2 cut(s) | 305, 1059 |
| AcyI | GRCGYC | 2 cut(s) | 62, 177 |
| AfaI | GTAC | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 123, 783 |
| AflII | CTTAAG | 1 cut(s) | 734 |
| AgsI | TTSAA | 7 cut(s) | 103, 247, 535, 857, 959, 1064, 1150 |
| AjiI | CACGTC | 1 cut(s) | 403 |
| AjnI | CCWGG | 1 cut(s) | 159 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 672, 704 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 98, 130 |
| AluBI | AGCT | 8 cut(s) | 20, 157, 283, 323, 625, 644, 1283, 1364 |
| AluI | AGCT | 8 cut(s) | 20, 157, 283, 323, 625, 644, 1283, 1364 |
| Alw21I | GWGCWC | 1 cut(s) | 627 |
| Alw26I | GTCTC | 2 cut(s) | 1267, 1416 |
| AlwI | GGATC | 1 cut(s) | 913 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 58, 160, 727, 1082 |
| Ama87I | CYCGRG | 2 cut(s) | 90, 226 |
| Aor13HI | TCCGGA | 1 cut(s) | 921 |
| AoxI | GGCC | 4 cut(s) | 6, 125, 818, 1084 |
| ApeKI | GCWGC | 3 cut(s) | 193, 721, 1271 |
| ApoI | RAATTY | 2 cut(s) | 347, 1379 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 110 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AspS9I | GGNCC | 3 cut(s) | 772, 786, 1085 |
| AsuHPI | GGTGA | 2 cut(s) | 602, 1322 |
| AsuNHI | GCTAGC | 1 cut(s) | 1279 |
| AvaI | CYCGRG | 2 cut(s) | 90, 226 |
| AvaII | GGWCC | 2 cut(s) | 772, 786 |
| AxyI | CCTNAGG | 1 cut(s) | 1287 |
| BanI | GGYRCC | 1 cut(s) | 61 |
| BanII | GRGCYC | 2 cut(s) | 627, 967 |
| BauI | CACGAG | 1 cut(s) | 1419 |
| BbsI | GAAGAC | 2 cut(s) | 432, 687 |
| Bbv12I | GWGCWC | 1 cut(s) | 627 |
| BbvCI | CCTCAGC | 1 cut(s) | 645 |
| BbvI | GCAGC | 3 cut(s) | 205, 733, 1283 |
| BccI | CCATC | 4 cut(s) | 581, 653, 1000, 1399 |
| BceAI | ACGGC | 2 cut(s) | 184, 355 |
| BciT130I | CCWGG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 2 cut(s) | 1267, 1416 |
| BfaI | CTAG | 5 cut(s) | 66, 635, 848, 1232, 1280 |
| BfmI | CTRYAG | 1 cut(s) | 540 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BfrI | CTTAAG | 1 cut(s) | 734 |
| BfuAI | ACCTGC | 1 cut(s) | 985 |
| BisI | GCNGC | 7 cut(s) | 6, 96, 194, 218, 238, 722, 1272 |
| BlsI | GCNGC | 7 cut(s) | 7, 97, 195, 219, 239, 723, 1273 |
| Bme1390I | CCNGG | 1 cut(s) | 161 |
| Bme18I | GGWCC | 2 cut(s) | 772, 786 |
| BmeT110I | CYCGRG | 2 cut(s) | 90, 226 |
| BmgBI | CACGTC | 1 cut(s) | 403 |
| BmgT120I | GGNCC | 3 cut(s) | 772, 786, 1085 |
| BmiI | GGNNCC | 4 cut(s) | 45, 63, 774, 966 |
| BmrFI | CCNGG | 1 cut(s) | 161 |
| BmsI | GCATC | 4 cut(s) | 604, 658, 1147, 1258 |
| BmtI | GCTAGC | 1 cut(s) | 1283 |
| BpiI | GAAGAC | 2 cut(s) | 432, 687 |
| Bpu10I | CCTNAGC | 2 cut(s) | 618, 645 |
| Bsa29I | ATCGAT | 1 cut(s) | 201 |
| BsaHI | GRCGYC | 2 cut(s) | 62, 177 |
| BsaI | GGTCTC | 1 cut(s) | 1267 |
| BsaWI | WCCGGW | 1 cut(s) | 921 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 123, 783 |
| Bse118I | RCCGGY | 1 cut(s) | 8 |
| Bse1I | ACTGG | 1 cut(s) | 1038 |
| Bse21I | CCTNAGG | 1 cut(s) | 1287 |
| Bse3DI | GCAATG | 1 cut(s) | 1281 |
| BseAI | TCCGGA | 1 cut(s) | 921 |
| BseBI | CCWGG | 1 cut(s) | 161 |
| BseCI | ATCGAT | 1 cut(s) | 201 |
| BseGI | GGATG | 8 cut(s) | 580, 616, 664, 673, 1015, 1094, 1162, 1410 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 123, 783 |
| BseMI | GCAATG | 1 cut(s) | 1281 |
| BseMII | CTCAG | 4 cut(s) | 315, 632, 636, 1278 |
| BseNI | ACTGG | 1 cut(s) | 1038 |
| BseRI | GAGGAG | 8 cut(s) | 106, 320, 347, 452, 455, 458, 905, 1372 |
| BseX3I | CGGCCG | 1 cut(s) | 6 |
| BseXI | GCAGC | 3 cut(s) | 205, 733, 1283 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| Bsh1236I | CGCG | 1 cut(s) | 240 |
| Bsh1285I | CGRYCG | 1 cut(s) | 9 |
| BshFI | GGCC | 4 cut(s) | 8, 127, 820, 1086 |
| BshNI | GGYRCC | 1 cut(s) | 61 |
| BshVI | ATCGAT | 1 cut(s) | 201 |
| BsiEI | CGRYCG | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 627 |
| BsiHKCI | CYCGRG | 2 cut(s) | 90, 226 |
| BsiSI | CCGG | 3 cut(s) | 9, 266, 922 |
| BslFI | GGGAC | 1 cut(s) | 1208 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 123, 783 |
| BsmAI | GTCTC | 2 cut(s) | 1267, 1416 |
| BsmFI | GGGAC | 1 cut(s) | 1208 |
| BsmI | GAATGC | 1 cut(s) | 1078 |
| BsnI | GGCC | 4 cut(s) | 8, 127, 820, 1086 |
| Bso31I | GGTCTC | 1 cut(s) | 1267 |
| BsoBI | CYCGRG | 2 cut(s) | 90, 226 |
| Bsp1286I | GDGCHC | 2 cut(s) | 627, 967 |
| Bsp13I | TCCGGA | 1 cut(s) | 921 |
| Bsp143I | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| BspANI | GGCC | 4 cut(s) | 8, 127, 820, 1086 |
| BspCNI | CTCAG | 4 cut(s) | 316, 631, 637, 1279 |
| BspDI | ATCGAT | 1 cut(s) | 201 |
| BspEI | TCCGGA | 1 cut(s) | 921 |
| BspFNI | CGCG | 1 cut(s) | 240 |
| BspHI | TCATGA | 1 cut(s) | 627 |
| BspLI | GGNNCC | 4 cut(s) | 45, 63, 774, 966 |
| BspMI | ACCTGC | 1 cut(s) | 985 |
| BspOI | GCTAGC | 1 cut(s) | 1283 |
| BspPI | GGATC | 1 cut(s) | 913 |
| BspT107I | GGYRCC | 1 cut(s) | 61 |
| BspTI | CTTAAG | 1 cut(s) | 734 |
| BspTNI | GGTCTC | 1 cut(s) | 1267 |
| BsrBI | CCGCTC | 2 cut(s) | 220, 1229 |
| BsrDI | GCAATG | 1 cut(s) | 1281 |
| BsrFI | RCCGGY | 1 cut(s) | 8 |
| BsrI | ACTGG | 1 cut(s) | 1038 |
| BssAI | RCCGGY | 1 cut(s) | 8 |
| BssMI | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| BssNI | GRCGYC | 2 cut(s) | 62, 177 |
| BssSI | CACGAG | 1 cut(s) | 1419 |
| Bst2BI | CACGAG | 1 cut(s) | 1419 |
| Bst2UI | CCWGG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 3 cut(s) | 500, 830, 901 |
| Bst6I | CTCTTC | 3 cut(s) | 116, 600, 1236 |
| BstACI | GRCGYC | 2 cut(s) | 62, 177 |
| BstAFI | CTTAAG | 1 cut(s) | 734 |
| BstC8I | GCNNGC | 2 cut(s) | 60, 1281 |
| BstDEI | CTNAG | 4 cut(s) | 324, 618, 645, 1287 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 121 |
| BstF5I | GGATG | 8 cut(s) | 580, 616, 664, 673, 1015, 1094, 1162, 1410 |
| BstFNI | CGCG | 1 cut(s) | 240 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 5 cut(s) | 154, 276, 847, 885, 921 |
| BstMAI | GTCTC | 2 cut(s) | 1267, 1416 |
| BstMBI | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| BstMCI | CGRYCG | 1 cut(s) | 9 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 95, 190, 237, 545, 1256, 1280 |
| BstNI | CCWGG | 1 cut(s) | 161 |
| BstSCI | CCNGG | 1 cut(s) | 159 |
| BstSFI | CTRYAG | 1 cut(s) | 540 |
| BstUI | CGCG | 1 cut(s) | 240 |
| BstV1I | GCAGC | 3 cut(s) | 205, 733, 1283 |
| BstV2I | GAAGAC | 2 cut(s) | 432, 687 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 54 |
| BstZI | CGGCCG | 1 cut(s) | 6 |
| Bsu15I | ATCGAT | 1 cut(s) | 201 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1287 |
| BsuRI | GGCC | 4 cut(s) | 8, 127, 820, 1086 |
| BsuTUI | ATCGAT | 1 cut(s) | 201 |
| BtrI | CACGTC | 1 cut(s) | 403 |
| BtsCI | GGATG | 8 cut(s) | 580, 616, 664, 673, 1015, 1094, 1162, 1410 |
| BtsI | GCAGTG | 1 cut(s) | 59 |
| BtsIMutI | CAGTG | 2 cut(s) | 59, 835 |
| BveI | ACCTGC | 1 cut(s) | 985 |
| Cac8I | GCNNGC | 2 cut(s) | 60, 1281 |
| CaiI | CAGNNNCTG | 4 cut(s) | 58, 160, 727, 1082 |
| CciI | TCATGA | 1 cut(s) | 627 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Cfr10I | RCCGGY | 1 cut(s) | 8 |
| Cfr13I | GGNCC | 3 cut(s) | 772, 786, 1085 |
| ClaI | ATCGAT | 1 cut(s) | 201 |
| CseI | GACGC | 1 cut(s) | 185 |
| Csp6I | GTAC | 1 cut(s) | 253 |
| CviAII | CATG | 3 cut(s) | 628, 713, 790 |
| CviQI | GTAC | 1 cut(s) | 253 |
| DdeI | CTNAG | 4 cut(s) | 324, 618, 645, 1287 |
| DinI | GGCGCC | 1 cut(s) | 63 |
| DpnI | GATC | 5 cut(s) | 153, 275, 846, 884, 920 |
| DpnII | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| DraI | TTTAAA | 1 cut(s) | 1384 |
| EaeI | YGGCCR | 1 cut(s) | 6 |
| EagI | CGGCCG | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 3 cut(s) | 116, 600, 1236 |
| EarI | CTCTTC | 3 cut(s) | 116, 600, 1236 |
| EciI | GGCGGA | 4 cut(s) | 224, 284, 422, 1358 |
| Ecl136II | GAGCTC | 1 cut(s) | 625 |
| EclXI | CGGCCG | 1 cut(s) | 6 |
| Eco24I | GRGCYC | 2 cut(s) | 627, 967 |
| Eco31I | GGTCTC | 1 cut(s) | 1267 |
| Eco32I | GATATC | 1 cut(s) | 205 |
| Eco47I | GGWCC | 2 cut(s) | 772, 786 |
| Eco52I | CGGCCG | 1 cut(s) | 6 |
| Eco53kI | GAGCTC | 1 cut(s) | 625 |
| Eco57I | CTGAAG | 2 cut(s) | 305, 1059 |
| Eco81I | CCTNAGG | 1 cut(s) | 1287 |
| Eco88I | CYCGRG | 2 cut(s) | 90, 226 |
| EcoICRI | GAGCTC | 1 cut(s) | 625 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 121 |
| EcoRI | GAATTC | 1 cut(s) | 347 |
| EcoRII | CCWGG | 1 cut(s) | 159 |
| EcoRV | GATATC | 1 cut(s) | 205 |
| EcoT38I | GRGCYC | 2 cut(s) | 627, 967 |
| EgeI | GGCGCC | 1 cut(s) | 63 |
| EheI | GGCGCC | 1 cut(s) | 63 |
| FaeI | CATG | 3 cut(s) | 631, 716, 793 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 95, 127, 952, 984, 1044, 1076, 1317, 1349 |
| FaqI | GGGAC | 1 cut(s) | 1208 |
| FatI | CATG | 3 cut(s) | 627, 712, 789 |
| FauI | CCCGC | 3 cut(s) | 786, 880, 1234 |
| FauNDI | CATATG | 1 cut(s) | 1451 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 96, 194, 218, 238, 722, 1272 |
| FokI | GGATG | 8 cut(s) | 587, 623, 671, 680, 1022, 1081, 1169, 1417 |
| FriOI | GRGCYC | 2 cut(s) | 627, 967 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 96, 194, 218, 238, 722, 1272 |
| FspBI | CTAG | 5 cut(s) | 66, 635, 848, 1232, 1280 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 7 cut(s) | 6, 96, 194, 218, 238, 722, 1272 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 4 cut(s) | 8, 127, 820, 1086 |
| HapII | CCGG | 3 cut(s) | 9, 266, 922 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1I | GRCGYC | 2 cut(s) | 62, 177 |
| Hin1II | CATG | 3 cut(s) | 631, 716, 793 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HinfI | GANTC | 4 cut(s) | 262, 368, 631, 1079 |
| HpaII | CCGG | 3 cut(s) | 9, 266, 922 |
| HphI | GGTGA | 2 cut(s) | 602, 1322 |
| Hpy166II | GTNNAC | 2 cut(s) | 166, 298 |
| Hpy188I | TCNGA | 6 cut(s) | 24, 82, 373, 742, 882, 1267 |
| Hpy188III | TCNNGA | 9 cut(s) | 226, 277, 317, 620, 628, 848, 922, 1135, 1286 |
| Hpy8I | GTNNAC | 2 cut(s) | 166, 298 |
| Hpy99I | CGWCG | 3 cut(s) | 43, 179, 656 |
| HpyAV | CCTTC | 7 cut(s) | 280, 304, 322, 464, 529, 587, 978 |
| HpyCH4III | ACNGT | 3 cut(s) | 500, 830, 901 |
| HpyCH4IV | ACGT | 1 cut(s) | 402 |
| HpyCH4V | TGCA | 5 cut(s) | 671, 809, 1076, 1250, 1271 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 95, 190, 237, 545, 1256, 1280 |
| HpyF3I | CTNAG | 4 cut(s) | 324, 618, 645, 1287 |
| HpySE526I | ACGT | 1 cut(s) | 402 |
| Hsp92I | GRCGYC | 2 cut(s) | 62, 177 |
| Hsp92II | CATG | 3 cut(s) | 631, 716, 793 |
| HspAI | GCGC | 1 cut(s) | 62 |
| KasI | GGCGCC | 1 cut(s) | 61 |
| Kpn2I | TCCGGA | 1 cut(s) | 921 |
| Kzo9I | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| LmnI | GCTCC | 5 cut(s) | 43, 162, 622, 970, 1288 |
| Lsp1109I | GCAGC | 3 cut(s) | 205, 733, 1283 |
| LweI | GCATC | 4 cut(s) | 604, 658, 1147, 1258 |
| MaeI | CTAG | 5 cut(s) | 66, 635, 848, 1232, 1280 |
| MaeII | ACGT | 1 cut(s) | 402 |
| MaeIII | GTNAC | 3 cut(s) | 802, 895, 1390 |
| MalI | GATC | 5 cut(s) | 153, 275, 846, 884, 920 |
| MbiI | CCGCTC | 2 cut(s) | 220, 1229 |
| MboI | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| MhlI | GDGCHC | 2 cut(s) | 627, 967 |
| MluCI | AATT | 4 cut(s) | 242, 347, 489, 1379 |
| Mly113I | GGCGCC | 1 cut(s) | 62 |
| MmeI | TCCRAC | 1 cut(s) | 1134 |
| MroI | TCCGGA | 1 cut(s) | 921 |
| MroXI | GAANNNNTTC | 1 cut(s) | 110 |
| MseI | TTAA | 4 cut(s) | 507, 735, 1317, 1383 |
| MspCI | CTTAAG | 1 cut(s) | 734 |
| MspI | CCGG | 3 cut(s) | 9, 266, 922 |
| MspR9I | CCNGG | 1 cut(s) | 161 |
| Mva1269I | GAATGC | 1 cut(s) | 1078 |
| MvaI | CCWGG | 1 cut(s) | 161 |
| MvnI | CGCG | 1 cut(s) | 240 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 95, 190, 237, 545, 1256, 1280 |
| NarI | GGCGCC | 1 cut(s) | 62 |
| NdeI | CATATG | 1 cut(s) | 1451 |
| NdeII | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| NheI | GCTAGC | 1 cut(s) | 1279 |
| NlaIII | CATG | 3 cut(s) | 631, 716, 793 |
| NlaIV | GGNNCC | 4 cut(s) | 45, 63, 774, 966 |
| NmeAIII | GCCGAG | 1 cut(s) | 205 |
| NmuCI | GTSAC | 1 cut(s) | 1390 |
| PaeR7I | CTCGAG | 2 cut(s) | 90, 226 |
| PagI | TCATGA | 1 cut(s) | 627 |
| PctI | GAATGC | 1 cut(s) | 1078 |
| PdmI | GAANNNNTTC | 1 cut(s) | 110 |
| PfeI | GAWTC | 4 cut(s) | 262, 368, 631, 1079 |
| PflFI | GACNNNGTC | 1 cut(s) | 1220 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 783 |
| PkrI | GCNGC | 7 cut(s) | 7, 97, 195, 219, 239, 723, 1273 |
| PluTI | GGCGCC | 1 cut(s) | 65 |
| Psp124BI | GAGCTC | 1 cut(s) | 627 |
| Psp6I | CCWGG | 1 cut(s) | 159 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 159 |
| PspN4I | GGNNCC | 4 cut(s) | 45, 63, 774, 966 |
| PspPI | GGNCC | 3 cut(s) | 772, 786, 1085 |
| PspXI | VCTCGAGB | 1 cut(s) | 90 |
| PstNI | CAGNNNCTG | 4 cut(s) | 58, 160, 727, 1082 |
| PsyI | GACNNNGTC | 1 cut(s) | 1220 |
| RsaI | GTAC | 1 cut(s) | 254 |
| RsaNI | GTAC | 1 cut(s) | 253 |
| SacI | GAGCTC | 1 cut(s) | 627 |
| SaqAI | TTAA | 4 cut(s) | 507, 735, 1317, 1383 |
| SatI | GCNGC | 7 cut(s) | 6, 96, 194, 218, 238, 722, 1272 |
| Sau3AI | GATC | 5 cut(s) | 151, 273, 844, 882, 918 |
| Sau96I | GGNCC | 3 cut(s) | 772, 786, 1085 |
| ScrFI | CCNGG | 1 cut(s) | 161 |
| SduI | GDGCHC | 2 cut(s) | 627, 967 |
| SfaNI | GCATC | 4 cut(s) | 604, 658, 1147, 1258 |
| SfcI | CTRYAG | 1 cut(s) | 540 |
| SfoI | GGCGCC | 1 cut(s) | 63 |
| Sfr274I | CTCGAG | 2 cut(s) | 90, 226 |
| SinI | GGWCC | 2 cut(s) | 772, 786 |
| SlaI | CTCGAG | 2 cut(s) | 90, 226 |
| SmlI | CTYRAG | 3 cut(s) | 90, 226, 734 |
| SmoI | CTYRAG | 3 cut(s) | 90, 226, 734 |
| Sse9I | AATT | 4 cut(s) | 242, 347, 489, 1379 |
| SspDI | GGCGCC | 1 cut(s) | 61 |
| SspMI | CTAG | 5 cut(s) | 66, 635, 848, 1232, 1280 |
| SstI | GAGCTC | 1 cut(s) | 627 |
| StyD4I | CCNGG | 1 cut(s) | 159 |
| TaaI | ACNGT | 3 cut(s) | 500, 830, 901 |
| TaiI | ACGT | 1 cut(s) | 405 |
| TaqI | TCGA | 6 cut(s) | 91, 150, 174, 201, 227, 351 |
| TasI | AATT | 4 cut(s) | 242, 347, 489, 1379 |
| TauI | GCSGC | 4 cut(s) | 8, 98, 220, 240 |
| TfiI | GAWTC | 4 cut(s) | 262, 368, 631, 1079 |
| Tru1I | TTAA | 4 cut(s) | 507, 735, 1317, 1383 |
| Tru9I | TTAA | 4 cut(s) | 507, 735, 1317, 1383 |
| TscAI | CASTG | 2 cut(s) | 59, 835 |
| TseFI | GTSAC | 1 cut(s) | 1390 |
| TseI | GCWGC | 3 cut(s) | 193, 721, 1271 |
| Tsp45I | GTSAC | 1 cut(s) | 1390 |
| TspDTI | ATGAA | 7 cut(s) | 390, 501, 591, 644, 693, 729, 1085 |
| TspGWI | ACGGA | 3 cut(s) | 19, 56, 315 |
| TspRI | CASTG | 2 cut(s) | 59, 835 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1220 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 783 |
| Vha464I | CTTAAG | 1 cut(s) | 734 |
| VpaK11BI | GGWCC | 2 cut(s) | 772, 786 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 121 |
| XapI | RAATTY | 2 cut(s) | 347, 1379 |
| XbaI | TCTAGA | 1 cut(s) | 847 |
| XhoI | CTCGAG | 2 cut(s) | 90, 226 |
| XmnI | GAANNNNTTC | 1 cut(s) | 110 |
| XspI | CTAG | 5 cut(s) | 66, 635, 848, 1232, 1280 |