Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 393, 1560 |
| AarI | CACCTGC | 1 cut(s) | 937 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1206 |
| Acc36I | ACCTGC | 1 cut(s) | 937 |
| Acc65I | GGTACC | 1 cut(s) | 530 |
| AccB1I | GGYRCC | 1 cut(s) | 530 |
| AccI | GTMKAC | 2 cut(s) | 685, 1153 |
| AciI | CCGC | 4 cut(s) | 344, 358, 1309, 1625 |
| AclWI | GGATC | 4 cut(s) | 510, 1046, 1666, 1686 |
| AcoI | YGGCCR | 2 cut(s) | 410, 715 |
| AcsI | RAATTY | 4 cut(s) | 301, 729, 1259, 1691 |
| AcuI | CTGAAG | 4 cut(s) | 486, 972, 1049, 1251 |
| AfaI | GTAC | 4 cut(s) | 157, 532, 560, 908 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 221, 304, 527, 713 |
| AgsI | TTSAA | 9 cut(s) | 22, 182, 250, 626, 734, 1120, 1215, 1235, 1709 |
| AhlI | ACTAGT | 1 cut(s) | 311 |
| AjnI | CCWGG | 2 cut(s) | 1127, 1674 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1177, 1209 |
| AleI | CACNNNNGTG | 1 cut(s) | 1402 |
| AluBI | AGCT | 7 cut(s) | 17, 127, 132, 657, 807, 923, 1658 |
| AluI | AGCT | 7 cut(s) | 17, 127, 132, 657, 807, 923, 1658 |
| Alw21I | GWGCWC | 1 cut(s) | 553 |
| Alw26I | GTCTC | 4 cut(s) | 124, 212, 328, 1265 |
| Alw44I | GTGCAC | 1 cut(s) | 549 |
| AlwI | GGATC | 4 cut(s) | 510, 1046, 1666, 1686 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1274 |
| AoxI | GGCC | 3 cut(s) | 410, 715, 1383 |
| ApaLI | GTGCAC | 1 cut(s) | 549 |
| ApeKI | GCWGC | 2 cut(s) | 1106, 1312 |
| ApoI | RAATTY | 4 cut(s) | 301, 729, 1259, 1691 |
| Asp718I | GGTACC | 1 cut(s) | 530 |
| AspLEI | GCGC | 1 cut(s) | 1071 |
| AspS9I | GGNCC | 1 cut(s) | 72 |
| AsuC2I | CCSGG | 1 cut(s) | 522 |
| AsuHPI | GGTGA | 3 cut(s) | 611, 1389, 1420 |
| AvaII | GGWCC | 1 cut(s) | 72 |
| BaeGI | GKGCMC | 1 cut(s) | 553 |
| BalI | TGGCCA | 2 cut(s) | 412, 717 |
| BanI | GGYRCC | 1 cut(s) | 530 |
| Bbv12I | GWGCWC | 1 cut(s) | 553 |
| BbvI | GCAGC | 2 cut(s) | 1093, 1299 |
| BccI | CCATC | 5 cut(s) | 58, 402, 707, 811, 854 |
| BciT130I | CCWGG | 2 cut(s) | 1129, 1676 |
| BcnI | CCSGG | 1 cut(s) | 522 |
| BcoDI | GTCTC | 4 cut(s) | 124, 212, 328, 1265 |
| BcuI | ACTAGT | 1 cut(s) | 311 |
| BfaI | CTAG | 6 cut(s) | 312, 329, 350, 804, 831, 1197 |
| BfmI | CTRYAG | 1 cut(s) | 612 |
| BfuAI | ACCTGC | 1 cut(s) | 937 |
| BisI | GCNGC | 3 cut(s) | 1107, 1310, 1313 |
| BlpI | GCTNAGC | 1 cut(s) | 128 |
| BlsI | GCNGC | 3 cut(s) | 1108, 1311, 1314 |
| Bme1390I | CCNGG | 3 cut(s) | 522, 1129, 1676 |
| Bme18I | GGWCC | 1 cut(s) | 72 |
| BmgT120I | GGNCC | 1 cut(s) | 72 |
| BmiI | GGNNCC | 4 cut(s) | 73, 375, 518, 532 |
| BmrFI | CCNGG | 3 cut(s) | 522, 1129, 1676 |
| BmrI | ACTGGG | 1 cut(s) | 1151 |
| BmsI | GCATC | 2 cut(s) | 1093, 1168 |
| BmuI | ACTGGG | 1 cut(s) | 1151 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1464 |
| BpmI | CTGGAG | 1 cut(s) | 764 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 128 |
| BpuMI | CCSGG | 1 cut(s) | 522 |
| BsaJI | CCNNGG | 4 cut(s) | 520, 678, 708, 1462 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1165, 1195 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 221, 304, 527, 713 |
| Bse1I | ACTGG | 3 cut(s) | 51, 1146, 1310 |
| Bse3DI | GCAATG | 4 cut(s) | 448, 768, 999, 1008 |
| BseBI | CCWGG | 2 cut(s) | 1129, 1676 |
| BseDI | CCNNGG | 4 cut(s) | 520, 678, 708, 1462 |
| BseGI | GGATG | 6 cut(s) | 235, 640, 718, 1044, 1124, 1620 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 221, 304, 527, 713 |
| BseMI | GCAATG | 4 cut(s) | 448, 768, 999, 1008 |
| BseMII | CTCAG | 2 cut(s) | 137, 546 |
| BseNI | ACTGG | 3 cut(s) | 51, 1146, 1310 |
| BseRI | GAGGAG | 1 cut(s) | 21 |
| BseSI | GKGCMC | 1 cut(s) | 553 |
| BseXI | GCAGC | 2 cut(s) | 1093, 1299 |
| BshFI | GGCC | 3 cut(s) | 412, 717, 1385 |
| BshNI | GGYRCC | 1 cut(s) | 530 |
| BsiHKAI | GWGCWC | 1 cut(s) | 553 |
| BsiSI | CCGG | 1 cut(s) | 522 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 221, 304, 527, 713 |
| BsmAI | GTCTC | 4 cut(s) | 124, 212, 328, 1265 |
| BsmBI | CGTCTC | 2 cut(s) | 124, 212 |
| BsmI | GAATGC | 1 cut(s) | 1363 |
| BsnI | GGCC | 3 cut(s) | 412, 717, 1385 |
| Bsp1286I | GDGCHC | 1 cut(s) | 553 |
| Bsp143I | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 128 |
| BspACI | CCGC | 4 cut(s) | 344, 358, 1309, 1625 |
| BspANI | GGCC | 3 cut(s) | 412, 717, 1385 |
| BspCNI | CTCAG | 2 cut(s) | 136, 547 |
| BspLI | GGNNCC | 4 cut(s) | 73, 375, 518, 532 |
| BspMAI | CTGCAG | 1 cut(s) | 616 |
| BspMI | ACCTGC | 1 cut(s) | 937 |
| BspPI | GGATC | 4 cut(s) | 510, 1046, 1666, 1686 |
| BspT107I | GGYRCC | 1 cut(s) | 530 |
| BsrDI | GCAATG | 4 cut(s) | 448, 768, 999, 1008 |
| BsrI | ACTGG | 3 cut(s) | 51, 1146, 1310 |
| BssECI | CCNNGG | 4 cut(s) | 520, 678, 708, 1462 |
| BssMI | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| BssNAI | GTATAC | 2 cut(s) | 686, 1154 |
| BssT1I | CCWWGG | 2 cut(s) | 678, 708 |
| Bst1107I | GTATAC | 2 cut(s) | 686, 1154 |
| Bst2UI | CCWGG | 2 cut(s) | 1129, 1676 |
| Bst4CI | ACNGT | 4 cut(s) | 341, 1276, 1463, 1750 |
| Bst6I | CTCTTC | 1 cut(s) | 313 |
| BstC8I | GCNNGC | 2 cut(s) | 1169, 1536 |
| BstDEI | CTNAG | 4 cut(s) | 123, 128, 555, 1387 |
| BstDSI | CCRYGG | 1 cut(s) | 1462 |
| BstF5I | GGATG | 6 cut(s) | 235, 640, 718, 1044, 1124, 1620 |
| BstHHI | GCGC | 1 cut(s) | 1071 |
| BstKTI | GATC | 8 cut(s) | 505, 604, 768, 1054, 1291, 1528, 1674, 1681 |
| BstMAI | GTCTC | 4 cut(s) | 124, 212, 328, 1265 |
| BstMBI | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 34, 366, 929, 1068, 1306 |
| BstNI | CCWGG | 2 cut(s) | 1129, 1676 |
| BstNSI | RCATGY | 2 cut(s) | 1171, 1538 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1464 |
| BstSCI | CCNGG | 3 cut(s) | 520, 1127, 1674 |
| BstSFI | CTRYAG | 1 cut(s) | 612 |
| BstSLI | GKGCMC | 1 cut(s) | 553 |
| BstV1I | GCAGC | 2 cut(s) | 1093, 1299 |
| BstX2I | RGATCY | 2 cut(s) | 1051, 1678 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 408, 963 |
| BstYI | RGATCY | 2 cut(s) | 1051, 1678 |
| BstZ17I | GTATAC | 2 cut(s) | 686, 1154 |
| BsuRI | GGCC | 3 cut(s) | 412, 717, 1385 |
| BtgI | CCRYGG | 1 cut(s) | 1462 |
| BtsCI | GGATG | 6 cut(s) | 235, 640, 718, 1044, 1124, 1620 |
| BtsIMutI | CAGTG | 1 cut(s) | 337 |
| BveI | ACCTGC | 1 cut(s) | 937 |
| Cac8I | GCNNGC | 2 cut(s) | 1169, 1536 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1274 |
| CfoI | GCGC | 1 cut(s) | 1071 |
| Cfr13I | GGNCC | 1 cut(s) | 72 |
| CseI | GACGC | 1 cut(s) | 1196 |
| Csp6I | GTAC | 4 cut(s) | 156, 531, 559, 907 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 494, 529 |
| CviQI | GTAC | 4 cut(s) | 156, 531, 559, 907 |
| DdeI | CTNAG | 4 cut(s) | 123, 128, 555, 1387 |
| DpnI | GATC | 8 cut(s) | 504, 603, 767, 1053, 1290, 1527, 1673, 1680 |
| DpnII | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| DraI | TTTAAA | 1 cut(s) | 541 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1206 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1206 |
| EaeI | YGGCCR | 2 cut(s) | 410, 715 |
| Eam1104I | CTCTTC | 1 cut(s) | 313 |
| EarI | CTCTTC | 1 cut(s) | 313 |
| EciI | GGCGGA | 1 cut(s) | 333 |
| Eco130I | CCWWGG | 2 cut(s) | 678, 708 |
| Eco32I | GATATC | 1 cut(s) | 1594 |
| Eco47I | GGWCC | 1 cut(s) | 72 |
| Eco57I | CTGAAG | 4 cut(s) | 486, 972, 1049, 1251 |
| EcoO109I | RGGNCCY | 1 cut(s) | 72 |
| EcoRII | CCWGG | 2 cut(s) | 1127, 1674 |
| EcoRV | GATATC | 1 cut(s) | 1594 |
| EcoT14I | CCWWGG | 2 cut(s) | 678, 708 |
| ErhI | CCWWGG | 2 cut(s) | 678, 708 |
| Esp3I | CGTCTC | 2 cut(s) | 124, 212 |
| FauNDI | CATATG | 1 cut(s) | 1522 |
| FblI | GTMKAC | 2 cut(s) | 685, 1153 |
| Fnu4HI | GCNGC | 3 cut(s) | 1107, 1310, 1313 |
| FokI | GGATG | 6 cut(s) | 242, 647, 725, 1051, 1111, 1627 |
| Fsp4HI | GCNGC | 3 cut(s) | 1107, 1310, 1313 |
| FspBI | CTAG | 6 cut(s) | 312, 329, 350, 804, 831, 1197 |
| GlaI | GCGC | 1 cut(s) | 1070 |
| GluI | GCNGC | 3 cut(s) | 1107, 1310, 1313 |
| GsuI | CTGGAG | 1 cut(s) | 764 |
| HaeIII | GGCC | 3 cut(s) | 412, 717, 1385 |
| HapII | CCGG | 1 cut(s) | 522 |
| HgaI | GACGC | 1 cut(s) | 1196 |
| HhaI | GCGC | 1 cut(s) | 1071 |
| Hin6I | GCGC | 1 cut(s) | 1069 |
| HinP1I | GCGC | 1 cut(s) | 1069 |
| HincII | GTYRAC | 1 cut(s) | 243 |
| HindII | GTYRAC | 1 cut(s) | 243 |
| HinfI | GANTC | 5 cut(s) | 448, 724, 883, 1228, 1391 |
| HpaII | CCGG | 1 cut(s) | 522 |
| HphI | GGTGA | 3 cut(s) | 611, 1389, 1420 |
| Hpy166II | GTNNAC | 6 cut(s) | 243, 551, 686, 1154, 1324, 1496 |
| Hpy188I | TCNGA | 9 cut(s) | 567, 984, 1026, 1078, 1225, 1270, 1340, 1470, 1787 |
| Hpy188III | TCNNGA | 3 cut(s) | 1197, 1232, 1253 |
| Hpy8I | GTNNAC | 6 cut(s) | 243, 551, 686, 1154, 1324, 1496 |
| HpyAV | CCTTC | 7 cut(s) | 85, 493, 680, 899, 1073, 1203, 1568 |
| HpyCH4III | ACNGT | 4 cut(s) | 341, 1276, 1463, 1750 |
| HpyCH4IV | ACGT | 3 cut(s) | 117, 164, 1442 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 34, 366, 929, 1068, 1306 |
| HpyF3I | CTNAG | 4 cut(s) | 123, 128, 555, 1387 |
| HpySE526I | ACGT | 3 cut(s) | 117, 164, 1442 |
| HspAI | GCGC | 1 cut(s) | 1069 |
| KpnI | GGTACC | 1 cut(s) | 534 |
| Kzo9I | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| LmnI | GCTCC | 8 cut(s) | 112, 137, 300, 709, 745, 928, 1186, 1690 |
| Lsp1109I | GCAGC | 2 cut(s) | 1093, 1299 |
| LweI | GCATC | 2 cut(s) | 1093, 1168 |
| MaeI | CTAG | 6 cut(s) | 312, 329, 350, 804, 831, 1197 |
| MaeII | ACGT | 3 cut(s) | 117, 164, 1442 |
| MalI | GATC | 8 cut(s) | 504, 603, 767, 1053, 1290, 1527, 1673, 1680 |
| MboI | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| MboII | GAAGA | 9 cut(s) | 207, 330, 335, 665, 860, 1061, 1447, 1747, 1777 |
| MfeI | CAATTG | 2 cut(s) | 788, 1779 |
| MflI | RGATCY | 2 cut(s) | 1051, 1678 |
| MhlI | GDGCHC | 1 cut(s) | 553 |
| MlsI | TGGCCA | 2 cut(s) | 412, 717 |
| MluNI | TGGCCA | 2 cut(s) | 412, 717 |
| MlyI | GAGTC | 1 cut(s) | 1237 |
| MmeI | TCCRAC | 2 cut(s) | 980, 1566 |
| MnlI | CCTC | 7 cut(s) | 470, 743, 1249, 1556, 1582, 1645, 1696 |
| Mox20I | TGGCCA | 2 cut(s) | 412, 717 |
| MscI | TGGCCA | 2 cut(s) | 412, 717 |
| MseI | TTAA | 4 cut(s) | 185, 540, 978, 1754 |
| MslI | CAYNNNNRTG | 4 cut(s) | 855, 1352, 1402, 1406 |
| Msp20I | TGGCCA | 2 cut(s) | 412, 717 |
| MspI | CCGG | 1 cut(s) | 522 |
| MspR9I | CCNGG | 3 cut(s) | 522, 1129, 1676 |
| MunI | CAATTG | 2 cut(s) | 788, 1779 |
| Mva1269I | GAATGC | 1 cut(s) | 1363 |
| MvaI | CCWGG | 2 cut(s) | 1129, 1676 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 34, 366, 929, 1068, 1306 |
| NciI | CCSGG | 1 cut(s) | 522 |
| NdeI | CATATG | 1 cut(s) | 1522 |
| NdeII | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| NlaIV | GGNNCC | 4 cut(s) | 73, 375, 518, 532 |
| NspI | RCATGY | 2 cut(s) | 1171, 1538 |
| OliI | CACNNNNGTG | 1 cut(s) | 1402 |
| PaeI | GCATGC | 2 cut(s) | 1171, 1538 |
| PaqCI | CACCTGC | 1 cut(s) | 937 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 892 |
| PctI | GAATGC | 1 cut(s) | 1363 |
| PfeI | GAWTC | 4 cut(s) | 448, 724, 883, 1391 |
| PflFI | GACNNNGTC | 2 cut(s) | 339, 694 |
| PfoI | TCCNGGA | 2 cut(s) | 1127, 1674 |
| PkrI | GCNGC | 3 cut(s) | 1108, 1311, 1314 |
| PleI | GAGTC | 1 cut(s) | 1236 |
| PpsI | GAGTC | 1 cut(s) | 1236 |
| PpuMI | RGGWCCY | 1 cut(s) | 72 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1464 |
| PsiI | TTATAA | 2 cut(s) | 393, 1560 |
| Psp5II | RGGWCCY | 1 cut(s) | 72 |
| Psp6I | CCWGG | 2 cut(s) | 1127, 1674 |
| PspGI | CCWGG | 2 cut(s) | 1127, 1674 |
| PspN4I | GGNNCC | 4 cut(s) | 73, 375, 518, 532 |
| PspPI | GGNCC | 1 cut(s) | 72 |
| PspPPI | RGGWCCY | 1 cut(s) | 72 |
| PstI | CTGCAG | 1 cut(s) | 616 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1274 |
| PsuI | RGATCY | 2 cut(s) | 1051, 1678 |
| PsyI | GACNNNGTC | 2 cut(s) | 339, 694 |
| RsaI | GTAC | 4 cut(s) | 157, 532, 560, 908 |
| RsaNI | GTAC | 4 cut(s) | 156, 531, 559, 907 |
| RseI | CAYNNNNRTG | 4 cut(s) | 855, 1352, 1402, 1406 |
| SaqAI | TTAA | 4 cut(s) | 185, 540, 978, 1754 |
| SatI | GCNGC | 3 cut(s) | 1107, 1310, 1313 |
| Sau3AI | GATC | 8 cut(s) | 502, 601, 765, 1051, 1288, 1525, 1671, 1678 |
| Sau96I | GGNCC | 1 cut(s) | 72 |
| SchI | GAGTC | 1 cut(s) | 1237 |
| ScrFI | CCNGG | 3 cut(s) | 522, 1129, 1676 |
| SduI | GDGCHC | 1 cut(s) | 553 |
| SfaNI | GCATC | 2 cut(s) | 1093, 1168 |
| SfcI | CTRYAG | 1 cut(s) | 612 |
| SinI | GGWCC | 1 cut(s) | 72 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 855, 1352, 1402, 1406 |
| SpeI | ACTAGT | 1 cut(s) | 311 |
| SphI | GCATGC | 2 cut(s) | 1171, 1538 |
| SsiI | CCGC | 4 cut(s) | 344, 358, 1309, 1625 |
| SspMI | CTAG | 6 cut(s) | 312, 329, 350, 804, 831, 1197 |
| StyD4I | CCNGG | 3 cut(s) | 520, 1127, 1674 |
| StyI | CCWWGG | 2 cut(s) | 678, 708 |
| TaaI | ACNGT | 4 cut(s) | 341, 1276, 1463, 1750 |
| TaiI | ACGT | 3 cut(s) | 120, 167, 1445 |
| TatI | WGTACW | 1 cut(s) | 558 |
| TauI | GCSGC | 1 cut(s) | 1312 |
| TfiI | GAWTC | 4 cut(s) | 448, 724, 883, 1391 |
| Tru1I | TTAA | 4 cut(s) | 185, 540, 978, 1754 |
| Tru9I | TTAA | 4 cut(s) | 185, 540, 978, 1754 |
| TscAI | CASTG | 1 cut(s) | 344 |
| TseI | GCWGC | 2 cut(s) | 1106, 1312 |
| TspGWI | ACGGA | 2 cut(s) | 228, 1044 |
| TspRI | CASTG | 1 cut(s) | 344 |
| Tth111I | GACNNNGTC | 2 cut(s) | 339, 694 |
| VneI | GTGCAC | 1 cut(s) | 549 |
| VpaK11BI | GGWCC | 1 cut(s) | 72 |
| XapI | RAATTY | 4 cut(s) | 301, 729, 1259, 1691 |
| XbaI | TCTAGA | 1 cut(s) | 1196 |
| XceI | RCATGY | 2 cut(s) | 1171, 1538 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 542, 1695 |
| XmiI | GTMKAC | 2 cut(s) | 685, 1153 |
| XspI | CTAG | 6 cut(s) | 312, 329, 350, 804, 831, 1197 |