ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 125 |
| AccI | GTMKAC | 1 cut(s) | 55 |
| AccII | CGCG | 1 cut(s) | 22 |
| AciI | CCGC | 1 cut(s) | 310 |
| AclI | AACGTT | 1 cut(s) | 476 |
| AcoI | YGGCCR | 2 cut(s) | 86, 392 |
| AcsI | RAATTY | 1 cut(s) | 331 |
| AcvI | CACGTG | 1 cut(s) | 92 |
| AflIII | ACRYGT | 1 cut(s) | 339 |
| AgsI | TTSAA | 2 cut(s) | 241, 382 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 189 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 388, 420 |
| AluBI | AGCT | 4 cut(s) | 7, 69, 164, 248 |
| AluI | AGCT | 4 cut(s) | 7, 69, 164, 248 |
| Alw21I | GWGCWC | 1 cut(s) | 250 |
| AoxI | GGCC | 2 cut(s) | 86, 392 |
| ApeKI | GCWGC | 3 cut(s) | 4, 17, 164 |
| ApoI | RAATTY | 1 cut(s) | 331 |
| AspLEI | GCGC | 2 cut(s) | 22, 126 |
| AspS9I | GGNCC | 2 cut(s) | 145, 372 |
| AsuHPI | GGTGA | 2 cut(s) | 289, 440 |
| AvaII | GGWCC | 2 cut(s) | 145, 372 |
| AxyI | CCTNAGG | 1 cut(s) | 198 |
| BalI | TGGCCA | 2 cut(s) | 88, 394 |
| BanII | GRGCYC | 1 cut(s) | 250 |
| BbrPI | CACGTG | 1 cut(s) | 92 |
| BbsI | GAAGAC | 1 cut(s) | 188 |
| Bbv12I | GWGCWC | 1 cut(s) | 250 |
| BbvI | GCAGC | 3 cut(s) | 16, 29, 151 |
| BccI | CCATC | 2 cut(s) | 411, 425 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 289, 323 |
| BisI | GCNGC | 3 cut(s) | 5, 18, 165 |
| BlsI | GCNGC | 3 cut(s) | 6, 19, 166 |
| Bme18I | GGWCC | 2 cut(s) | 145, 372 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 189 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 372 |
| BmiI | GGNNCC | 2 cut(s) | 146, 147 |
| BmsI | GCATC | 3 cut(s) | 111, 254, 450 |
| BpiI | GAAGAC | 1 cut(s) | 188 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| Bse118I | RCCGGY | 1 cut(s) | 374 |
| Bse21I | CCTNAGG | 1 cut(s) | 198 |
| BseGI | GGATG | 3 cut(s) | 45, 126, 441 |
| BseMII | CTCAG | 1 cut(s) | 404 |
| BseXI | GCAGC | 3 cut(s) | 16, 29, 151 |
| BseYI | CCCAGC | 1 cut(s) | 267 |
| Bsh1236I | CGCG | 1 cut(s) | 22 |
| BshFI | GGCC | 2 cut(s) | 88, 394 |
| BsiHKAI | GWGCWC | 1 cut(s) | 250 |
| BsiSI | CCGG | 1 cut(s) | 375 |
| BslFI | GGGAC | 1 cut(s) | 158 |
| BsmFI | GGGAC | 1 cut(s) | 158 |
| BsnI | GGCC | 2 cut(s) | 88, 394 |
| Bsp1286I | GDGCHC | 1 cut(s) | 250 |
| Bsp143I | GATC | 1 cut(s) | 359 |
| BspACI | CCGC | 1 cut(s) | 310 |
| BspANI | GGCC | 2 cut(s) | 88, 394 |
| BspCNI | CTCAG | 1 cut(s) | 405 |
| BspFNI | CGCG | 1 cut(s) | 22 |
| BspLI | GGNNCC | 2 cut(s) | 146, 147 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BsrFI | RCCGGY | 1 cut(s) | 374 |
| BssAI | RCCGGY | 1 cut(s) | 374 |
| BssMI | GATC | 1 cut(s) | 359 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstDEI | CTNAG | 3 cut(s) | 152, 198, 413 |
| BstF5I | GGATG | 3 cut(s) | 45, 126, 441 |
| BstFNI | CGCG | 1 cut(s) | 22 |
| BstHHI | GCGC | 2 cut(s) | 22, 126 |
| BstKTI | GATC | 1 cut(s) | 362 |
| BstMBI | GATC | 1 cut(s) | 359 |
| BstUI | CGCG | 1 cut(s) | 22 |
| BstV1I | GCAGC | 3 cut(s) | 16, 29, 151 |
| BstV2I | GAAGAC | 1 cut(s) | 188 |
| Bsu36I | CCTNAGG | 1 cut(s) | 198 |
| BsuRI | GGCC | 2 cut(s) | 88, 394 |
| BtsCI | GGATG | 3 cut(s) | 45, 126, 441 |
| CfoI | GCGC | 2 cut(s) | 22, 126 |
| Cfr10I | RCCGGY | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 372 |
| CseI | GACGC | 1 cut(s) | 11 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 78, 113 |
| CviJI | RGCY | 9 cut(s) | 7, 69, 88, 164, 214, 248, 378, 394, 466 |
| CviKI_1 | RGCY | 9 cut(s) | 7, 69, 88, 164, 214, 248, 378, 394, 466 |
| DdeI | CTNAG | 3 cut(s) | 152, 198, 413 |
| DpnI | GATC | 1 cut(s) | 361 |
| DpnII | GATC | 1 cut(s) | 359 |
| DriI | GACNNNNNGTC | 1 cut(s) | 189 |
| EaeI | YGGCCR | 2 cut(s) | 86, 392 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 189 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Ecl136II | GAGCTC | 1 cut(s) | 248 |
| Eco24I | GRGCYC | 1 cut(s) | 250 |
| Eco47I | GGWCC | 2 cut(s) | 145, 372 |
| Eco53kI | GAGCTC | 1 cut(s) | 248 |
| Eco72I | CACGTG | 1 cut(s) | 92 |
| Eco81I | CCTNAGG | 1 cut(s) | 198 |
| EcoICRI | GAGCTC | 1 cut(s) | 248 |
| EcoO109I | RGGNCCY | 1 cut(s) | 145 |
| EcoT38I | GRGCYC | 1 cut(s) | 250 |
| FaiI | YATR | 2 cut(s) | 66, 275 |
| FaqI | GGGAC | 1 cut(s) | 158 |
| FauI | CCCGC | 1 cut(s) | 303 |
| FblI | GTMKAC | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 18, 165 |
| FokI | GGATG | 3 cut(s) | 32, 133, 428 |
| FriOI | GRGCYC | 1 cut(s) | 250 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 18, 165 |
| FspI | TGCGCA | 1 cut(s) | 125 |
| GlaI | GCGC | 2 cut(s) | 21, 125 |
| GluI | GCNGC | 3 cut(s) | 5, 18, 165 |
| GsaI | CCCAGC | 1 cut(s) | 271 |
| HaeIII | GGCC | 2 cut(s) | 88, 394 |
| HapII | CCGG | 1 cut(s) | 375 |
| HgaI | GACGC | 1 cut(s) | 11 |
| HhaI | GCGC | 2 cut(s) | 22, 126 |
| Hin6I | GCGC | 2 cut(s) | 20, 124 |
| HinP1I | GCGC | 2 cut(s) | 20, 124 |
| HinfI | GANTC | 2 cut(s) | 293, 318 |
| HpaII | CCGG | 1 cut(s) | 375 |
| HphI | GGTGA | 2 cut(s) | 289, 440 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 79 |
| Hpy188I | TCNGA | 2 cut(s) | 261, 292 |
| Hpy188III | TCNNGA | 1 cut(s) | 451 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 79 |
| HpyCH4IV | ACGT | 3 cut(s) | 91, 341, 476 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 28 |
| HpyF3I | CTNAG | 3 cut(s) | 152, 198, 413 |
| HpySE526I | ACGT | 3 cut(s) | 91, 341, 476 |
| HspAI | GCGC | 2 cut(s) | 20, 124 |
| KflI | GGGWCCC | 1 cut(s) | 145 |
| Kzo9I | GATC | 1 cut(s) | 359 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 3 cut(s) | 161, 438, 470 |
| LpnPI | CCDG | 9 cut(s) | 126, 199, 253, 267, 386, 388, 421, 425, 436 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 29, 151 |
| LweI | GCATC | 3 cut(s) | 111, 254, 450 |
| MaeII | ACGT | 3 cut(s) | 91, 341, 476 |
| MaeIII | GTNAC | 1 cut(s) | 277 |
| MalI | GATC | 1 cut(s) | 361 |
| MboI | GATC | 1 cut(s) | 359 |
| MboII | GAAGA | 9 cut(s) | 30, 193, 242, 245, 248, 279, 288, 340, 394 |
| MfeI | CAATTG | 1 cut(s) | 460 |
| MhlI | GDGCHC | 1 cut(s) | 250 |
| MlsI | TGGCCA | 2 cut(s) | 88, 394 |
| MluCI | AATT | 2 cut(s) | 331, 460 |
| MluNI | TGGCCA | 2 cut(s) | 88, 394 |
| MnlI | CCTC | 2 cut(s) | 159, 203 |
| Mox20I | TGGCCA | 2 cut(s) | 88, 394 |
| MscI | TGGCCA | 2 cut(s) | 88, 394 |
| MseI | TTAA | 3 cut(s) | 72, 221, 323 |
| Msp20I | TGGCCA | 2 cut(s) | 88, 394 |
| MspI | CCGG | 1 cut(s) | 375 |
| MunI | CAATTG | 1 cut(s) | 460 |
| MvnI | CGCG | 1 cut(s) | 22 |
| NdeII | GATC | 1 cut(s) | 359 |
| NlaIV | GGNNCC | 2 cut(s) | 146, 147 |
| NmuCI | GTSAC | 1 cut(s) | 277 |
| NsbI | TGCGCA | 1 cut(s) | 125 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PfeI | GAWTC | 2 cut(s) | 293, 318 |
| PkrI | GCNGC | 3 cut(s) | 6, 19, 166 |
| PmaCI | CACGTG | 1 cut(s) | 92 |
| PmlI | CACGTG | 1 cut(s) | 92 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| PpuMI | RGGWCCY | 1 cut(s) | 145 |
| Psp124BI | GAGCTC | 1 cut(s) | 250 |
| Psp1406I | AACGTT | 1 cut(s) | 476 |
| Psp5II | RGGWCCY | 1 cut(s) | 145 |
| PspCI | CACGTG | 1 cut(s) | 92 |
| PspFI | CCCAGC | 1 cut(s) | 267 |
| PspN4I | GGNNCC | 2 cut(s) | 146, 147 |
| PspPI | GGNCC | 2 cut(s) | 145, 372 |
| PspPPI | RGGWCCY | 1 cut(s) | 145 |
| SacI | GAGCTC | 1 cut(s) | 250 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 3 cut(s) | 72, 221, 323 |
| SatI | GCNGC | 3 cut(s) | 5, 18, 165 |
| Sau3AI | GATC | 1 cut(s) | 359 |
| Sau96I | GGNCC | 2 cut(s) | 145, 372 |
| SduI | GDGCHC | 1 cut(s) | 250 |
| SfaNI | GCATC | 3 cut(s) | 111, 254, 450 |
| SinI | GGWCC | 2 cut(s) | 145, 372 |
| Sse9I | AATT | 2 cut(s) | 331, 460 |
| SsiI | CCGC | 1 cut(s) | 310 |
| SspI | AATATT | 1 cut(s) | 229 |
| SstI | GAGCTC | 1 cut(s) | 250 |
| TaiI | ACGT | 3 cut(s) | 94, 344, 479 |
| TaqI | TCGA | 1 cut(s) | 299 |
| TasI | AATT | 2 cut(s) | 331, 460 |
| TfiI | GAWTC | 2 cut(s) | 293, 318 |
| Tru1I | TTAA | 3 cut(s) | 72, 221, 323 |
| Tru9I | TTAA | 3 cut(s) | 72, 221, 323 |
| TseFI | GTSAC | 1 cut(s) | 277 |
| TseI | GCWGC | 3 cut(s) | 4, 17, 164 |
| Tsp45I | GTSAC | 1 cut(s) | 277 |
| TspGWI | ACGGA | 1 cut(s) | 31 |
| VpaK11BI | GGWCC | 2 cut(s) | 145, 372 |
| XapI | RAATTY | 1 cut(s) | 331 |
| XmiI | GTMKAC | 1 cut(s) | 55 |