ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 338, 443 |
| AccB1I | GGYRCC | 3 cut(s) | 125, 338, 443 |
| AccII | CGCG | 1 cut(s) | 441 |
| AcoI | YGGCCR | 1 cut(s) | 409 |
| AcsI | RAATTY | 1 cut(s) | 233 |
| AcuI | CTGAAG | 1 cut(s) | 579 |
| AfaI | GTAC | 5 cut(s) | 172, 340, 445, 463, 494 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 586, 607 |
| AgsI | TTSAA | 2 cut(s) | 616, 734 |
| AjnI | CCWGG | 2 cut(s) | 255, 521 |
| AluBI | AGCT | 7 cut(s) | 71, 285, 380, 542, 554, 624, 737 |
| AluI | AGCT | 7 cut(s) | 71, 285, 380, 542, 554, 624, 737 |
| Alw26I | GTCTC | 1 cut(s) | 398 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 602 |
| Ama87I | CYCGRG | 1 cut(s) | 684 |
| AoxI | GGCC | 4 cut(s) | 40, 135, 312, 409 |
| ApeKI | GCWGC | 4 cut(s) | 105, 260, 377, 542 |
| ApoI | RAATTY | 1 cut(s) | 233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 284 |
| Asp718I | GGTACC | 2 cut(s) | 338, 443 |
| AspA2I | CCTAGG | 1 cut(s) | 37 |
| AspS9I | GGNCC | 3 cut(s) | 164, 313, 506 |
| AsuC2I | CCSGG | 2 cut(s) | 277, 786 |
| AsuHPI | GGTGA | 3 cut(s) | 22, 511, 800 |
| AvaI | CYCGRG | 1 cut(s) | 684 |
| AvaII | GGWCC | 2 cut(s) | 164, 506 |
| AvrII | CCTAGG | 1 cut(s) | 37 |
| BalI | TGGCCA | 1 cut(s) | 411 |
| BanI | GGYRCC | 3 cut(s) | 125, 338, 443 |
| BanII | GRGCYC | 1 cut(s) | 721 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 272, 304 |
| BbvI | GCAGC | 4 cut(s) | 117, 247, 389, 529 |
| BccI | CCATC | 2 cut(s) | 41, 698 |
| BceAI | ACGGC | 1 cut(s) | 583 |
| BciT130I | CCWGG | 2 cut(s) | 257, 523 |
| BcnI | CCSGG | 2 cut(s) | 277, 786 |
| BcoDI | GTCTC | 1 cut(s) | 398 |
| BfaI | CTAG | 2 cut(s) | 38, 44 |
| BisI | GCNGC | 7 cut(s) | 90, 106, 124, 145, 261, 378, 543 |
| BlnI | CCTAGG | 1 cut(s) | 37 |
| BlsI | GCNGC | 7 cut(s) | 91, 107, 125, 146, 262, 379, 544 |
| BmcAI | AGTACT | 1 cut(s) | 494 |
| Bme1390I | CCNGG | 4 cut(s) | 257, 277, 523, 786 |
| Bme18I | GGWCC | 2 cut(s) | 164, 506 |
| BmeT110I | CYCGRG | 1 cut(s) | 684 |
| BmgT120I | GGNCC | 3 cut(s) | 164, 313, 506 |
| BmiI | GGNNCC | 6 cut(s) | 127, 340, 349, 445, 676, 718 |
| BmrFI | CCNGG | 4 cut(s) | 257, 277, 523, 786 |
| BmsI | GCATC | 1 cut(s) | 750 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 495, 527 |
| Bpu10I | CCTNAGC | 1 cut(s) | 390 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BpuMI | CCSGG | 2 cut(s) | 277, 786 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 316, 664 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 166, 196 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 586, 607 |
| Bse1I | ACTGG | 1 cut(s) | 412 |
| Bse3DI | GCAATG | 1 cut(s) | 649 |
| BseBI | CCWGG | 2 cut(s) | 257, 523 |
| BseDI | CCNNGG | 3 cut(s) | 37, 316, 664 |
| BseGI | GGATG | 2 cut(s) | 33, 642 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 586, 607 |
| BseMI | GCAATG | 1 cut(s) | 649 |
| BseMII | CTCAG | 1 cut(s) | 404 |
| BseNI | ACTGG | 1 cut(s) | 412 |
| BseXI | GCAGC | 4 cut(s) | 117, 247, 389, 529 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BshFI | GGCC | 4 cut(s) | 42, 137, 314, 411 |
| BshNI | GGYRCC | 3 cut(s) | 125, 338, 443 |
| BsiHKCI | CYCGRG | 1 cut(s) | 684 |
| BsiSI | CCGG | 3 cut(s) | 276, 546, 785 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 586, 607 |
| BsmAI | GTCTC | 1 cut(s) | 398 |
| BsnI | GGCC | 4 cut(s) | 42, 137, 314, 411 |
| BsoBI | CYCGRG | 1 cut(s) | 684 |
| Bsp1286I | GDGCHC | 1 cut(s) | 721 |
| BspANI | GGCC | 4 cut(s) | 42, 137, 314, 411 |
| BspCNI | CTCAG | 1 cut(s) | 403 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspHI | TCATGA | 1 cut(s) | 400 |
| BspLI | GGNNCC | 6 cut(s) | 127, 340, 349, 445, 676, 718 |
| BspQI | GCTCTTC | 1 cut(s) | 275 |
| BspT107I | GGYRCC | 3 cut(s) | 125, 338, 443 |
| BsrDI | GCAATG | 1 cut(s) | 649 |
| BsrI | ACTGG | 1 cut(s) | 412 |
| BssECI | CCNNGG | 3 cut(s) | 37, 316, 664 |
| BssT1I | CCWWGG | 2 cut(s) | 37, 664 |
| Bst2UI | CCWGG | 2 cut(s) | 257, 523 |
| Bst4CI | ACNGT | 3 cut(s) | 203, 272, 698 |
| Bst6I | CTCTTC | 2 cut(s) | 275, 423 |
| BstC8I | GCNNGC | 2 cut(s) | 622, 739 |
| BstDEI | CTNAG | 2 cut(s) | 390, 659 |
| BstF5I | GGATG | 2 cut(s) | 33, 642 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstMAI | GTCTC | 1 cut(s) | 398 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 53, 62, 129, 327, 386, 417, 551, 567, 617 |
| BstNI | CCWGG | 2 cut(s) | 257, 523 |
| BstSCI | CCNGG | 4 cut(s) | 255, 275, 521, 784 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 4 cut(s) | 117, 247, 389, 529 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 671 |
| BsuRI | GGCC | 4 cut(s) | 42, 137, 314, 411 |
| BtsCI | GGATG | 2 cut(s) | 33, 642 |
| BtsIMutI | CAGTG | 1 cut(s) | 703 |
| Cac8I | GCNNGC | 2 cut(s) | 622, 739 |
| CaiI | CAGNNNCTG | 1 cut(s) | 602 |
| CciI | TCATGA | 1 cut(s) | 400 |
| Cfr13I | GGNCC | 3 cut(s) | 164, 313, 506 |
| Csp6I | GTAC | 5 cut(s) | 171, 339, 444, 462, 493 |
| CviAII | CATG | 2 cut(s) | 401, 474 |
| CviQI | GTAC | 5 cut(s) | 171, 339, 444, 462, 493 |
| DdeI | CTNAG | 2 cut(s) | 390, 659 |
| EaeI | YGGCCR | 1 cut(s) | 409 |
| Eam1104I | CTCTTC | 2 cut(s) | 275, 423 |
| EarI | CTCTTC | 2 cut(s) | 275, 423 |
| EciI | GGCGGA | 1 cut(s) | 729 |
| Eco130I | CCWWGG | 2 cut(s) | 37, 664 |
| Eco147I | AGGCCT | 2 cut(s) | 42, 137 |
| Eco24I | GRGCYC | 1 cut(s) | 721 |
| Eco47I | GGWCC | 2 cut(s) | 164, 506 |
| Eco57I | CTGAAG | 1 cut(s) | 579 |
| Eco88I | CYCGRG | 1 cut(s) | 684 |
| EcoO109I | RGGNCCY | 2 cut(s) | 164, 313 |
| EcoRII | CCWGG | 2 cut(s) | 255, 521 |
| EcoT14I | CCWWGG | 2 cut(s) | 37, 664 |
| EcoT38I | GRGCYC | 1 cut(s) | 721 |
| ErhI | CCWWGG | 2 cut(s) | 37, 664 |
| FaeI | CATG | 2 cut(s) | 404, 477 |
| FaiI | YATR | 6 cut(s) | 114, 402, 425, 475, 498, 628 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 608, 640 |
| FatI | CATG | 2 cut(s) | 400, 473 |
| FauI | CCCGC | 2 cut(s) | 74, 360 |
| Fnu4HI | GCNGC | 7 cut(s) | 90, 106, 124, 145, 261, 378, 543 |
| FokI | GGATG | 2 cut(s) | 20, 649 |
| FriOI | GRGCYC | 1 cut(s) | 721 |
| Fsp4HI | GCNGC | 7 cut(s) | 90, 106, 124, 145, 261, 378, 543 |
| FspBI | CTAG | 2 cut(s) | 38, 44 |
| GluI | GCNGC | 7 cut(s) | 90, 106, 124, 145, 261, 378, 543 |
| HaeIII | GGCC | 4 cut(s) | 42, 137, 314, 411 |
| HapII | CCGG | 3 cut(s) | 276, 546, 785 |
| Hin1II | CATG | 2 cut(s) | 404, 477 |
| HpaII | CCGG | 3 cut(s) | 276, 546, 785 |
| HphI | GGTGA | 3 cut(s) | 22, 511, 800 |
| Hpy166II | GTNNAC | 1 cut(s) | 649 |
| Hpy188I | TCNGA | 1 cut(s) | 598 |
| Hpy188III | TCNNGA | 1 cut(s) | 401 |
| Hpy8I | GTNNAC | 1 cut(s) | 649 |
| HpyCH4III | ACNGT | 3 cut(s) | 203, 272, 698 |
| HpyCH4V | TGCA | 6 cut(s) | 65, 105, 377, 453, 477, 765 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 53, 62, 129, 327, 386, 417, 551, 567, 617 |
| HpyF3I | CTNAG | 2 cut(s) | 390, 659 |
| Hsp92II | CATG | 2 cut(s) | 404, 477 |
| KpnI | GGTACC | 2 cut(s) | 342, 447 |
| LguI | GCTCTTC | 1 cut(s) | 275 |
| LmnI | GCTCC | 3 cut(s) | 539, 674, 716 |
| Lsp1109I | GCAGC | 4 cut(s) | 117, 247, 389, 529 |
| LweI | GCATC | 1 cut(s) | 750 |
| MaeI | CTAG | 2 cut(s) | 38, 44 |
| MaeIII | GTNAC | 3 cut(s) | 223, 394, 788 |
| MboII | GAAGA | 2 cut(s) | 292, 440 |
| MhlI | GDGCHC | 1 cut(s) | 721 |
| MlsI | TGGCCA | 1 cut(s) | 411 |
| MluCI | AATT | 5 cut(s) | 6, 60, 233, 331, 532 |
| MluNI | TGGCCA | 1 cut(s) | 411 |
| MmeI | TCCRAC | 2 cut(s) | 209, 538 |
| MnlI | CCTC | 4 cut(s) | 32, 274, 326, 497 |
| Mox20I | TGGCCA | 1 cut(s) | 411 |
| MroXI | GAANNNNTTC | 1 cut(s) | 284 |
| MscI | TGGCCA | 1 cut(s) | 411 |
| MseI | TTAA | 4 cut(s) | 240, 252, 572, 774 |
| Msp20I | TGGCCA | 1 cut(s) | 411 |
| MspA1I | CMGCKG | 2 cut(s) | 345, 353 |
| MspI | CCGG | 3 cut(s) | 276, 546, 785 |
| MspR9I | CCNGG | 4 cut(s) | 257, 277, 523, 786 |
| MvaI | CCWGG | 2 cut(s) | 257, 523 |
| MvnI | CGCG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 53, 62, 129, 327, 386, 417, 551, 567, 617 |
| NciI | CCSGG | 2 cut(s) | 277, 786 |
| NlaIII | CATG | 2 cut(s) | 404, 477 |
| NlaIV | GGNNCC | 6 cut(s) | 127, 340, 349, 445, 676, 718 |
| NmeAIII | GCCGAG | 1 cut(s) | 297 |
| NmuCI | GTSAC | 3 cut(s) | 223, 394, 788 |
| PaeR7I | CTCGAG | 1 cut(s) | 684 |
| PagI | TCATGA | 1 cut(s) | 400 |
| PceI | AGGCCT | 2 cut(s) | 42, 137 |
| PciSI | GCTCTTC | 1 cut(s) | 275 |
| PdmI | GAANNNNTTC | 1 cut(s) | 284 |
| PkrI | GCNGC | 7 cut(s) | 91, 107, 125, 146, 262, 379, 544 |
| PpuMI | RGGWCCY | 1 cut(s) | 164 |
| Psp5II | RGGWCCY | 1 cut(s) | 164 |
| Psp6I | CCWGG | 2 cut(s) | 255, 521 |
| PspGI | CCWGG | 2 cut(s) | 255, 521 |
| PspN4I | GGNNCC | 6 cut(s) | 127, 340, 349, 445, 676, 718 |
| PspPI | GGNCC | 3 cut(s) | 164, 313, 506 |
| PspPPI | RGGWCCY | 1 cut(s) | 164 |
| PspXI | VCTCGAGB | 1 cut(s) | 684 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 331, 363, 518, 550 |
| PstNI | CAGNNNCTG | 1 cut(s) | 602 |
| RsaI | GTAC | 5 cut(s) | 172, 340, 445, 463, 494 |
| RsaNI | GTAC | 5 cut(s) | 171, 339, 444, 462, 493 |
| SapI | GCTCTTC | 1 cut(s) | 275 |
| SaqAI | TTAA | 4 cut(s) | 240, 252, 572, 774 |
| SatI | GCNGC | 7 cut(s) | 90, 106, 124, 145, 261, 378, 543 |
| Sau96I | GGNCC | 3 cut(s) | 164, 313, 506 |
| ScaI | AGTACT | 1 cut(s) | 494 |
| ScrFI | CCNGG | 4 cut(s) | 257, 277, 523, 786 |
| SduI | GDGCHC | 1 cut(s) | 721 |
| SfaNI | GCATC | 1 cut(s) | 750 |
| Sfr274I | CTCGAG | 1 cut(s) | 684 |
| SinI | GGWCC | 2 cut(s) | 164, 506 |
| SlaI | CTCGAG | 1 cut(s) | 684 |
| SmlI | CTYRAG | 2 cut(s) | 308, 684 |
| SmoI | CTYRAG | 2 cut(s) | 308, 684 |
| Sse9I | AATT | 5 cut(s) | 6, 60, 233, 331, 532 |
| SseBI | AGGCCT | 2 cut(s) | 42, 137 |
| SspMI | CTAG | 2 cut(s) | 38, 44 |
| StuI | AGGCCT | 2 cut(s) | 42, 137 |
| StyD4I | CCNGG | 4 cut(s) | 255, 275, 521, 784 |
| StyI | CCWWGG | 2 cut(s) | 37, 664 |
| TaaI | ACNGT | 3 cut(s) | 203, 272, 698 |
| TaqI | TCGA | 1 cut(s) | 685 |
| TasI | AATT | 5 cut(s) | 6, 60, 233, 331, 532 |
| TatI | WGTACW | 3 cut(s) | 170, 461, 492 |
| TauI | GCSGC | 3 cut(s) | 92, 126, 147 |
| Tru1I | TTAA | 4 cut(s) | 240, 252, 572, 774 |
| Tru9I | TTAA | 4 cut(s) | 240, 252, 572, 774 |
| TscAI | CASTG | 1 cut(s) | 703 |
| TseFI | GTSAC | 3 cut(s) | 223, 394, 788 |
| TseI | GCWGC | 4 cut(s) | 105, 260, 377, 542 |
| Tsp45I | GTSAC | 3 cut(s) | 223, 394, 788 |
| TspGWI | ACGGA | 1 cut(s) | 552 |
| TspRI | CASTG | 1 cut(s) | 703 |
| VpaK11BI | GGWCC | 2 cut(s) | 164, 506 |
| XapI | RAATTY | 1 cut(s) | 233 |
| XhoI | CTCGAG | 1 cut(s) | 684 |
| XmaJI | CCTAGG | 1 cut(s) | 37 |
| XmnI | GAANNNNTTC | 1 cut(s) | 284 |
| XspI | CTAG | 2 cut(s) | 38, 44 |
| ZrmI | AGTACT | 1 cut(s) | 494 |