Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 81 - 201 | 1.1e-17 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 283 |
| AccB1I | GGYRCC | 2 cut(s) | 190, 210 |
| AccII | CGCG | 1 cut(s) | 196 |
| AciI | CCGC | 5 cut(s) | 194, 196, 324, 494, 644 |
| AcoI | YGGCCR | 1 cut(s) | 491 |
| AcsI | RAATTY | 1 cut(s) | 63 |
| AcyI | GRCGYC | 1 cut(s) | 191 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 627 |
| AgsI | TTSAA | 3 cut(s) | 241, 395, 434 |
| AhlI | ACTAGT | 1 cut(s) | 446 |
| AjnI | CCWGG | 2 cut(s) | 112, 268 |
| AluBI | AGCT | 4 cut(s) | 17, 28, 33, 370 |
| AluI | AGCT | 4 cut(s) | 17, 28, 33, 370 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 275 |
| AoxI | GGCC | 1 cut(s) | 491 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 1 cut(s) | 63 |
| AspLEI | GCGC | 2 cut(s) | 48, 193 |
| AspS9I | GGNCC | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 1 cut(s) | 61 |
| AsuII | TTCGAA | 1 cut(s) | 122 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| BanI | GGYRCC | 2 cut(s) | 190, 210 |
| BbvI | GCAGC | 1 cut(s) | 85 |
| BccI | CCATC | 2 cut(s) | 242, 625 |
| BciT130I | CCWGG | 2 cut(s) | 114, 270 |
| BclI | TGATCA | 1 cut(s) | 381 |
| BcuI | ACTAGT | 1 cut(s) | 446 |
| BfaI | CTAG | 1 cut(s) | 447 |
| BfoI | RGCGCY | 2 cut(s) | 49, 194 |
| BfuAI | ACCTGC | 1 cut(s) | 283 |
| BisI | GCNGC | 3 cut(s) | 99, 194, 494 |
| BlpI | GCTNAGC | 2 cut(s) | 29, 520 |
| BlsI | GCNGC | 3 cut(s) | 100, 195, 495 |
| Bme1390I | CCNGG | 2 cut(s) | 114, 270 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmgT120I | GGNCC | 1 cut(s) | 272 |
| BmiI | GGNNCC | 2 cut(s) | 192, 212 |
| BmrFI | CCNGG | 2 cut(s) | 114, 270 |
| BmsI | GCATC | 2 cut(s) | 410, 471 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 29, 520 |
| Bpu14I | TTCGAA | 1 cut(s) | 122 |
| BsaAI | YACGTR | 1 cut(s) | 527 |
| BsaHI | GRCGYC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 5 cut(s) | 194, 227, 307, 488, 621 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 627 |
| Bse1I | ACTGG | 1 cut(s) | 406 |
| Bse3DI | GCAATG | 1 cut(s) | 543 |
| BseBI | CCWGG | 2 cut(s) | 114, 270 |
| BseDI | CCNNGG | 5 cut(s) | 194, 227, 307, 488, 621 |
| BseGI | GGATG | 2 cut(s) | 617, 679 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 627 |
| BseMI | GCAATG | 1 cut(s) | 543 |
| BseNI | ACTGG | 1 cut(s) | 406 |
| BseXI | GCAGC | 1 cut(s) | 85 |
| Bsh1236I | CGCG | 1 cut(s) | 196 |
| BshFI | GGCC | 1 cut(s) | 493 |
| BshNI | GGYRCC | 2 cut(s) | 190, 210 |
| BslFI | GGGAC | 1 cut(s) | 357 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 627 |
| BsmFI | GGGAC | 1 cut(s) | 357 |
| BsnI | GGCC | 1 cut(s) | 493 |
| Bsp119I | TTCGAA | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 381 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 29, 520 |
| Bsp19I | CCATGG | 1 cut(s) | 307 |
| BspACI | CCGC | 5 cut(s) | 194, 196, 324, 494, 644 |
| BspANI | GGCC | 1 cut(s) | 493 |
| BspFNI | CGCG | 1 cut(s) | 196 |
| BspLI | GGNNCC | 2 cut(s) | 192, 212 |
| BspMI | ACCTGC | 1 cut(s) | 283 |
| BspT104I | TTCGAA | 1 cut(s) | 122 |
| BspT107I | GGYRCC | 2 cut(s) | 190, 210 |
| BsrDI | GCAATG | 1 cut(s) | 543 |
| BsrI | ACTGG | 1 cut(s) | 406 |
| BssECI | CCNNGG | 5 cut(s) | 194, 227, 307, 488, 621 |
| BssMI | GATC | 1 cut(s) | 381 |
| BssNI | GRCGYC | 1 cut(s) | 191 |
| BssT1I | CCWWGG | 4 cut(s) | 227, 307, 488, 621 |
| Bst2UI | CCWGG | 2 cut(s) | 114, 270 |
| Bst4CI | ACNGT | 2 cut(s) | 332, 580 |
| BstACI | GRCGYC | 1 cut(s) | 191 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 512 |
| BstBAI | YACGTR | 1 cut(s) | 527 |
| BstBI | TTCGAA | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 4 cut(s) | 19, 460, 513, 517 |
| BstDEI | CTNAG | 2 cut(s) | 29, 520 |
| BstDSI | CCRYGG | 2 cut(s) | 194, 307 |
| BstF5I | GGATG | 2 cut(s) | 617, 679 |
| BstFNI | CGCG | 1 cut(s) | 196 |
| BstH2I | RGCGCY | 2 cut(s) | 49, 194 |
| BstHHI | GCGC | 2 cut(s) | 48, 193 |
| BstKTI | GATC | 1 cut(s) | 384 |
| BstMBI | GATC | 1 cut(s) | 381 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 362, 512, 521 |
| BstNI | CCWGG | 2 cut(s) | 114, 270 |
| BstNSI | RCATGY | 3 cut(s) | 112, 462, 635 |
| BstSCI | CCNGG | 2 cut(s) | 112, 268 |
| BstUI | CGCG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 1 cut(s) | 85 |
| BsuRI | GGCC | 1 cut(s) | 493 |
| BtgI | CCRYGG | 2 cut(s) | 194, 307 |
| BtgZI | GCGATG | 1 cut(s) | 433 |
| BtsCI | GGATG | 2 cut(s) | 617, 679 |
| BveI | ACCTGC | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 4 cut(s) | 19, 460, 513, 517 |
| CaiI | CAGNNNCTG | 1 cut(s) | 275 |
| CfoI | GCGC | 2 cut(s) | 48, 193 |
| Cfr13I | GGNCC | 1 cut(s) | 272 |
| Cfr42I | CCGCGG | 1 cut(s) | 197 |
| CviAII | CATG | 8 cut(s) | 58, 109, 308, 459, 507, 601, 632, 701 |
| DdeI | CTNAG | 2 cut(s) | 29, 520 |
| DinI | GGCGCC | 1 cut(s) | 192 |
| DpnI | GATC | 1 cut(s) | 383 |
| DpnII | GATC | 1 cut(s) | 381 |
| EaeI | YGGCCR | 1 cut(s) | 491 |
| Eco130I | CCWWGG | 4 cut(s) | 227, 307, 488, 621 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoRII | CCWGG | 2 cut(s) | 112, 268 |
| EcoT14I | CCWWGG | 4 cut(s) | 227, 307, 488, 621 |
| EcoT22I | ATGCAT | 1 cut(s) | 464 |
| EgeI | GGCGCC | 1 cut(s) | 192 |
| EheI | GGCGCC | 1 cut(s) | 192 |
| ErhI | CCWWGG | 4 cut(s) | 227, 307, 488, 621 |
| FaeI | CATG | 8 cut(s) | 61, 112, 311, 462, 510, 604, 635, 704 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 17, 49 |
| FaqI | GGGAC | 1 cut(s) | 357 |
| FatI | CATG | 8 cut(s) | 57, 108, 307, 458, 506, 600, 631, 700 |
| FauI | CCCGC | 1 cut(s) | 651 |
| FbaI | TGATCA | 1 cut(s) | 381 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 194, 494 |
| FokI | GGATG | 2 cut(s) | 604, 686 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 194, 494 |
| FspBI | CTAG | 1 cut(s) | 447 |
| GlaI | GCGC | 2 cut(s) | 47, 192 |
| GluI | GCNGC | 3 cut(s) | 99, 194, 494 |
| HaeII | RGCGCY | 2 cut(s) | 49, 194 |
| HaeIII | GGCC | 1 cut(s) | 493 |
| HhaI | GCGC | 2 cut(s) | 48, 193 |
| Hin1I | GRCGYC | 1 cut(s) | 191 |
| Hin1II | CATG | 8 cut(s) | 61, 112, 311, 462, 510, 604, 635, 704 |
| Hin6I | GCGC | 2 cut(s) | 46, 191 |
| HinP1I | GCGC | 2 cut(s) | 46, 191 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 2 cut(s) | 440, 684 |
| HphI | GGTGA | 1 cut(s) | 61 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188III | TCNNGA | 2 cut(s) | 299, 566 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| HpyAV | CCTTC | 5 cut(s) | 60, 367, 412, 563, 704 |
| HpyCH4III | ACNGT | 2 cut(s) | 332, 580 |
| HpyCH4IV | ACGT | 1 cut(s) | 526 |
| HpyCH4V | TGCA | 5 cut(s) | 257, 278, 458, 462, 506 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 362, 512, 521 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 520 |
| HpySE526I | ACGT | 1 cut(s) | 526 |
| Hsp92I | GRCGYC | 1 cut(s) | 191 |
| Hsp92II | CATG | 8 cut(s) | 61, 112, 311, 462, 510, 604, 635, 704 |
| HspAI | GCGC | 2 cut(s) | 46, 191 |
| KasI | GGCGCC | 1 cut(s) | 190 |
| Ksp22I | TGATCA | 1 cut(s) | 381 |
| KspI | CCGCGG | 1 cut(s) | 197 |
| Kzo9I | GATC | 1 cut(s) | 381 |
| LmnI | GCTCC | 1 cut(s) | 106 |
| LpnPI | CCDG | 8 cut(s) | 99, 126, 193, 255, 282, 288, 412, 419 |
| Lsp1109I | GCAGC | 1 cut(s) | 85 |
| LweI | GCATC | 2 cut(s) | 410, 471 |
| MaeI | CTAG | 1 cut(s) | 447 |
| MaeII | ACGT | 1 cut(s) | 526 |
| MaeIII | GTNAC | 2 cut(s) | 299, 326 |
| MalI | GATC | 1 cut(s) | 383 |
| MboI | GATC | 1 cut(s) | 381 |
| MboII | GAAGA | 2 cut(s) | 554, 656 |
| MluCI | AATT | 3 cut(s) | 63, 219, 501 |
| Mly113I | GGCGCC | 1 cut(s) | 191 |
| MnlI | CCTC | 6 cut(s) | 31, 65, 82, 225, 434, 481 |
| Mph1103I | ATGCAT | 1 cut(s) | 464 |
| MseI | TTAA | 2 cut(s) | 234, 706 |
| MspA1I | CMGCKG | 1 cut(s) | 196 |
| MspR9I | CCNGG | 2 cut(s) | 114, 270 |
| MvaI | CCWGG | 2 cut(s) | 114, 270 |
| MvnI | CGCG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 362, 512, 521 |
| NarI | GGCGCC | 1 cut(s) | 191 |
| NcoI | CCATGG | 1 cut(s) | 307 |
| NdeII | GATC | 1 cut(s) | 381 |
| NlaIII | CATG | 8 cut(s) | 61, 112, 311, 462, 510, 604, 635, 704 |
| NlaIV | GGNNCC | 2 cut(s) | 192, 212 |
| NmuCI | GTSAC | 1 cut(s) | 299 |
| NsiI | ATGCAT | 1 cut(s) | 464 |
| NspI | RCATGY | 3 cut(s) | 112, 462, 635 |
| NspV | TTCGAA | 1 cut(s) | 122 |
| PaeI | GCATGC | 1 cut(s) | 462 |
| PfeI | GAWTC | 2 cut(s) | 440, 684 |
| PfoI | TCCNGGA | 1 cut(s) | 268 |
| PkrI | GCNGC | 3 cut(s) | 100, 195, 495 |
| PluTI | GGCGCC | 1 cut(s) | 194 |
| Ppu21I | YACGTR | 1 cut(s) | 527 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 2 cut(s) | 112, 268 |
| PspGI | CCWGG | 2 cut(s) | 112, 268 |
| PspN4I | GGNNCC | 2 cut(s) | 192, 212 |
| PspPI | GGNCC | 1 cut(s) | 272 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PstNI | CAGNNNCTG | 1 cut(s) | 275 |
| SacII | CCGCGG | 1 cut(s) | 197 |
| SaqAI | TTAA | 2 cut(s) | 234, 706 |
| SatI | GCNGC | 3 cut(s) | 99, 194, 494 |
| Sau3AI | GATC | 1 cut(s) | 381 |
| Sau96I | GGNCC | 1 cut(s) | 272 |
| ScrFI | CCNGG | 2 cut(s) | 114, 270 |
| SfaNI | GCATC | 2 cut(s) | 410, 471 |
| SfoI | GGCGCC | 1 cut(s) | 192 |
| Sfr303I | CCGCGG | 1 cut(s) | 197 |
| SfuI | TTCGAA | 1 cut(s) | 122 |
| SgrBI | CCGCGG | 1 cut(s) | 197 |
| SinI | GGWCC | 1 cut(s) | 272 |
| SpeI | ACTAGT | 1 cut(s) | 446 |
| SphI | GCATGC | 1 cut(s) | 462 |
| Sse9I | AATT | 3 cut(s) | 63, 219, 501 |
| SsiI | CCGC | 5 cut(s) | 194, 196, 324, 494, 644 |
| SspDI | GGCGCC | 1 cut(s) | 190 |
| SspMI | CTAG | 1 cut(s) | 447 |
| StyD4I | CCNGG | 2 cut(s) | 112, 268 |
| StyI | CCWWGG | 4 cut(s) | 227, 307, 488, 621 |
| TaaI | ACNGT | 2 cut(s) | 332, 580 |
| TaiI | ACGT | 1 cut(s) | 529 |
| TaqI | TCGA | 3 cut(s) | 122, 184, 443 |
| TasI | AATT | 3 cut(s) | 63, 219, 501 |
| TauI | GCSGC | 2 cut(s) | 196, 496 |
| TfiI | GAWTC | 2 cut(s) | 440, 684 |
| Tru1I | TTAA | 2 cut(s) | 234, 706 |
| Tru9I | TTAA | 2 cut(s) | 234, 706 |
| TseFI | GTSAC | 1 cut(s) | 299 |
| TseI | GCWGC | 1 cut(s) | 98 |
| Tsp45I | GTSAC | 1 cut(s) | 299 |
| TspDTI | ATGAA | 1 cut(s) | 536 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XapI | RAATTY | 1 cut(s) | 63 |
| XceI | RCATGY | 3 cut(s) | 112, 462, 635 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 225, 624 |
| XspI | CTAG | 1 cut(s) | 447 |
| Zsp2I | ATGCAT | 1 cut(s) | 464 |