ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 28 - 124 | 3.6e-13 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 95 |
| AcsI | RAATTY | 1 cut(s) | 34 |
| AflII | CTTAAG | 1 cut(s) | 203 |
| AgsI | TTSAA | 3 cut(s) | 34, 124, 386 |
| AluBI | AGCT | 3 cut(s) | 50, 314, 359 |
| AluI | AGCT | 3 cut(s) | 50, 314, 359 |
| AoxI | GGCC | 3 cut(s) | 72, 95, 237 |
| ApoI | RAATTY | 1 cut(s) | 34 |
| BfaI | CTAG | 1 cut(s) | 341 |
| BfrI | CTTAAG | 1 cut(s) | 203 |
| BmsI | GCATC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 2 cut(s) | 105, 240 |
| BseDI | CCNNGG | 2 cut(s) | 105, 240 |
| BseX3I | CGGCCG | 1 cut(s) | 95 |
| Bsh1285I | CGRYCG | 1 cut(s) | 98 |
| BshFI | GGCC | 3 cut(s) | 74, 97, 239 |
| BsiEI | CGRYCG | 1 cut(s) | 98 |
| BslFI | GGGAC | 1 cut(s) | 347 |
| BsmFI | GGGAC | 1 cut(s) | 347 |
| BsnI | GGCC | 3 cut(s) | 74, 97, 239 |
| Bsp143I | GATC | 1 cut(s) | 343 |
| Bsp19I | CCATGG | 1 cut(s) | 105 |
| BspANI | GGCC | 3 cut(s) | 74, 97, 239 |
| BspTI | CTTAAG | 1 cut(s) | 203 |
| BssECI | CCNNGG | 2 cut(s) | 105, 240 |
| BssMI | GATC | 1 cut(s) | 343 |
| BssT1I | CCWWGG | 1 cut(s) | 105 |
| BstAFI | CTTAAG | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 2 cut(s) | 156, 212 |
| BstDEI | CTNAG | 1 cut(s) | 353 |
| BstDSI | CCRYGG | 1 cut(s) | 105 |
| BstKTI | GATC | 1 cut(s) | 346 |
| BstMBI | GATC | 1 cut(s) | 343 |
| BstMCI | CGRYCG | 1 cut(s) | 98 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 164 |
| BstZI | CGGCCG | 1 cut(s) | 95 |
| BsuRI | GGCC | 3 cut(s) | 74, 97, 239 |
| BtgI | CCRYGG | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 2 cut(s) | 156, 212 |
| CviAII | CATG | 2 cut(s) | 106, 371 |
| DdeI | CTNAG | 1 cut(s) | 353 |
| DpnI | GATC | 1 cut(s) | 345 |
| DpnII | GATC | 1 cut(s) | 343 |
| EaeI | YGGCCR | 1 cut(s) | 95 |
| EagI | CGGCCG | 1 cut(s) | 95 |
| EclXI | CGGCCG | 1 cut(s) | 95 |
| Eco130I | CCWWGG | 1 cut(s) | 105 |
| Eco52I | CGGCCG | 1 cut(s) | 95 |
| EcoRI | GAATTC | 1 cut(s) | 34 |
| EcoT14I | CCWWGG | 1 cut(s) | 105 |
| ErhI | CCWWGG | 1 cut(s) | 105 |
| FaeI | CATG | 2 cut(s) | 109, 374 |
| FaiI | YATR | 4 cut(s) | 107, 119, 216, 372 |
| FaqI | GGGAC | 1 cut(s) | 347 |
| FatI | CATG | 2 cut(s) | 105, 370 |
| FspBI | CTAG | 1 cut(s) | 341 |
| HaeIII | GGCC | 3 cut(s) | 74, 97, 239 |
| Hin1II | CATG | 2 cut(s) | 109, 374 |
| HindIII | AAGCTT | 1 cut(s) | 312 |
| HinfI | GANTC | 2 cut(s) | 77, 139 |
| Hpy188I | TCNGA | 2 cut(s) | 223, 244 |
| Hpy188III | TCNNGA | 1 cut(s) | 341 |
| HpyCH4V | TGCA | 2 cut(s) | 18, 228 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 164 |
| HpyF3I | CTNAG | 1 cut(s) | 353 |
| Hsp92II | CATG | 2 cut(s) | 109, 374 |
| Kzo9I | GATC | 1 cut(s) | 343 |
| LpnPI | CCDG | 2 cut(s) | 24, 196 |
| LweI | GCATC | 1 cut(s) | 5 |
| MaeI | CTAG | 1 cut(s) | 341 |
| MalI | GATC | 1 cut(s) | 345 |
| MboI | GATC | 1 cut(s) | 343 |
| MfeI | CAATTG | 1 cut(s) | 328 |
| MluCI | AATT | 8 cut(s) | 19, 28, 34, 89, 112, 174, 253, 328 |
| MnlI | CCTC | 2 cut(s) | 64, 250 |
| MseI | TTAA | 3 cut(s) | 204, 252, 294 |
| MspCI | CTTAAG | 1 cut(s) | 203 |
| MunI | CAATTG | 1 cut(s) | 328 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 164 |
| NcoI | CCATGG | 1 cut(s) | 105 |
| NdeII | GATC | 1 cut(s) | 343 |
| NlaIII | CATG | 2 cut(s) | 109, 374 |
| PfeI | GAWTC | 2 cut(s) | 77, 139 |
| SaqAI | TTAA | 3 cut(s) | 204, 252, 294 |
| Sau3AI | GATC | 1 cut(s) | 343 |
| SetI | ASST | 3 cut(s) | 52, 316, 361 |
| SfaNI | GCATC | 1 cut(s) | 5 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| Sse9I | AATT | 8 cut(s) | 19, 28, 34, 89, 112, 174, 253, 328 |
| SspMI | CTAG | 1 cut(s) | 341 |
| StyI | CCWWGG | 1 cut(s) | 105 |
| TaqI | TCGA | 1 cut(s) | 172 |
| TasI | AATT | 8 cut(s) | 19, 28, 34, 89, 112, 174, 253, 328 |
| TfiI | GAWTC | 2 cut(s) | 77, 139 |
| Tru1I | TTAA | 3 cut(s) | 204, 252, 294 |
| Tru9I | TTAA | 3 cut(s) | 204, 252, 294 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Vha464I | CTTAAG | 1 cut(s) | 203 |
| XapI | RAATTY | 1 cut(s) | 34 |
| XbaI | TCTAGA | 1 cut(s) | 340 |
| XspI | CTAG | 1 cut(s) | 341 |