Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 212 - 292 | 4.4e-17 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 262 |
| AcsI | RAATTY | 4 cut(s) | 73, 172, 209, 484 |
| AcuI | CTGAAG | 2 cut(s) | 224, 789 |
| AcyI | GRCGYC | 1 cut(s) | 259 |
| AfaI | GTAC | 1 cut(s) | 878 |
| AfeI | AGCGCT | 1 cut(s) | 434 |
| AgsI | TTSAA | 5 cut(s) | 423, 439, 453, 475, 580 |
| AjnI | CCWGG | 1 cut(s) | 319 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 144, 176 |
| AluBI | AGCT | 2 cut(s) | 458, 631 |
| AluI | AGCT | 2 cut(s) | 458, 631 |
| Alw21I | GWGCWC | 1 cut(s) | 849 |
| Alw26I | GTCTC | 2 cut(s) | 170, 830 |
| Aor51HI | AGCGCT | 1 cut(s) | 434 |
| AoxI | GGCC | 2 cut(s) | 32, 317 |
| ApoI | RAATTY | 4 cut(s) | 73, 172, 209, 484 |
| AseI | ATTAAT | 1 cut(s) | 492 |
| AspLEI | GCGC | 2 cut(s) | 435, 541 |
| BanII | GRGCYC | 1 cut(s) | 691 |
| BbsI | GAAGAC | 1 cut(s) | 795 |
| Bbv12I | GWGCWC | 1 cut(s) | 849 |
| BccI | CCATC | 3 cut(s) | 347, 578, 617 |
| BciT130I | CCWGG | 1 cut(s) | 321 |
| BcoDI | GTCTC | 2 cut(s) | 170, 830 |
| BfaI | CTAG | 2 cut(s) | 675, 720 |
| BfmI | CTRYAG | 1 cut(s) | 840 |
| BfoI | RGCGCY | 1 cut(s) | 436 |
| Bme1390I | CCNGG | 1 cut(s) | 321 |
| BmrFI | CCNGG | 1 cut(s) | 321 |
| BmsI | GCATC | 1 cut(s) | 409 |
| BpiI | GAAGAC | 1 cut(s) | 795 |
| BsaHI | GRCGYC | 1 cut(s) | 259 |
| BsaI | GGTCTC | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 2 cut(s) | 237, 683 |
| Bse1I | ACTGG | 2 cut(s) | 179, 446 |
| BseBI | CCWGG | 1 cut(s) | 321 |
| BseDI | CCNNGG | 2 cut(s) | 237, 683 |
| BseGI | GGATG | 3 cut(s) | 328, 358, 628 |
| BseMII | CTCAG | 1 cut(s) | 741 |
| BseNI | ACTGG | 2 cut(s) | 179, 446 |
| BseYI | CCCAGC | 1 cut(s) | 504 |
| BshFI | GGCC | 2 cut(s) | 34, 319 |
| BsiHKAI | GWGCWC | 1 cut(s) | 849 |
| BslFI | GGGAC | 1 cut(s) | 498 |
| BsmAI | GTCTC | 2 cut(s) | 170, 830 |
| BsmFI | GGGAC | 1 cut(s) | 498 |
| BsmI | GAATGC | 1 cut(s) | 703 |
| BsnI | GGCC | 2 cut(s) | 34, 319 |
| Bso31I | GGTCTC | 1 cut(s) | 170 |
| Bsp1286I | GDGCHC | 2 cut(s) | 691, 849 |
| Bsp19I | CCATGG | 1 cut(s) | 237 |
| BspANI | GGCC | 2 cut(s) | 34, 319 |
| BspCNI | CTCAG | 1 cut(s) | 740 |
| BspMAI | CTGCAG | 1 cut(s) | 844 |
| BspTNI | GGTCTC | 1 cut(s) | 170 |
| BsrI | ACTGG | 2 cut(s) | 179, 446 |
| BssECI | CCNNGG | 2 cut(s) | 237, 683 |
| BssNI | GRCGYC | 1 cut(s) | 259 |
| BssT1I | CCWWGG | 2 cut(s) | 237, 683 |
| Bst2UI | CCWGG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 5 cut(s) | 43, 118, 528, 637, 832 |
| Bst6I | CTCTTC | 1 cut(s) | 341 |
| BstACI | GRCGYC | 1 cut(s) | 259 |
| BstDEI | CTNAG | 1 cut(s) | 727 |
| BstDSI | CCRYGG | 1 cut(s) | 237 |
| BstF5I | GGATG | 3 cut(s) | 328, 358, 628 |
| BstH2I | RGCGCY | 1 cut(s) | 436 |
| BstHHI | GCGC | 2 cut(s) | 435, 541 |
| BstMAI | GTCTC | 2 cut(s) | 170, 830 |
| BstNI | CCWGG | 1 cut(s) | 321 |
| BstNSI | RCATGY | 1 cut(s) | 751 |
| BstSCI | CCNGG | 1 cut(s) | 319 |
| BstSFI | CTRYAG | 1 cut(s) | 840 |
| BstV2I | GAAGAC | 1 cut(s) | 795 |
| BsuRI | GGCC | 2 cut(s) | 34, 319 |
| BtgI | CCRYGG | 1 cut(s) | 237 |
| BtsCI | GGATG | 3 cut(s) | 328, 358, 628 |
| BtsIMutI | CAGTG | 3 cut(s) | 48, 154, 642 |
| CfoI | GCGC | 2 cut(s) | 435, 541 |
| Csp6I | GTAC | 1 cut(s) | 877 |
| CviAII | CATG | 6 cut(s) | 123, 238, 288, 708, 748, 752 |
| CviQI | GTAC | 1 cut(s) | 877 |
| DdeI | CTNAG | 1 cut(s) | 727 |
| DraI | TTTAAA | 2 cut(s) | 270, 657 |
| Eam1104I | CTCTTC | 1 cut(s) | 341 |
| EarI | CTCTTC | 1 cut(s) | 341 |
| Eco130I | CCWWGG | 2 cut(s) | 237, 683 |
| Eco24I | GRGCYC | 1 cut(s) | 691 |
| Eco31I | GGTCTC | 1 cut(s) | 170 |
| Eco32I | GATATC | 1 cut(s) | 556 |
| Eco47III | AGCGCT | 1 cut(s) | 434 |
| Eco57I | CTGAAG | 2 cut(s) | 224, 789 |
| EcoRII | CCWGG | 1 cut(s) | 319 |
| EcoRV | GATATC | 1 cut(s) | 556 |
| EcoT14I | CCWWGG | 2 cut(s) | 237, 683 |
| EcoT22I | ATGCAT | 1 cut(s) | 753 |
| EcoT38I | GRGCYC | 1 cut(s) | 691 |
| ErhI | CCWWGG | 2 cut(s) | 237, 683 |
| FaeI | CATG | 6 cut(s) | 126, 241, 291, 711, 751, 755 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FaqI | GGGAC | 1 cut(s) | 498 |
| FatI | CATG | 6 cut(s) | 122, 237, 287, 707, 747, 751 |
| FokI | GGATG | 3 cut(s) | 315, 365, 635 |
| FriOI | GRGCYC | 1 cut(s) | 691 |
| FspBI | CTAG | 2 cut(s) | 675, 720 |
| GlaI | GCGC | 2 cut(s) | 434, 540 |
| GsaI | CCCAGC | 1 cut(s) | 508 |
| HaeII | RGCGCY | 1 cut(s) | 436 |
| HaeIII | GGCC | 2 cut(s) | 34, 319 |
| HhaI | GCGC | 2 cut(s) | 435, 541 |
| Hin1I | GRCGYC | 1 cut(s) | 259 |
| Hin1II | CATG | 6 cut(s) | 126, 241, 291, 711, 751, 755 |
| Hin6I | GCGC | 2 cut(s) | 433, 539 |
| HinP1I | GCGC | 2 cut(s) | 433, 539 |
| Hpy166II | GTNNAC | 2 cut(s) | 359, 595 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 204, 379 |
| Hpy188III | TCNNGA | 2 cut(s) | 82, 562 |
| Hpy8I | GTNNAC | 2 cut(s) | 359, 595 |
| Hpy99I | CGWCG | 2 cut(s) | 261, 264 |
| HpyAV | CCTTC | 2 cut(s) | 54, 146 |
| HpyCH4III | ACNGT | 5 cut(s) | 43, 118, 528, 637, 832 |
| HpyCH4IV | ACGT | 3 cut(s) | 259, 661, 875 |
| HpyCH4V | TGCA | 7 cut(s) | 122, 291, 617, 751, 842, 859, 872 |
| HpyF3I | CTNAG | 1 cut(s) | 727 |
| HpySE526I | ACGT | 3 cut(s) | 259, 661, 875 |
| Hsp92I | GRCGYC | 1 cut(s) | 259 |
| Hsp92II | CATG | 6 cut(s) | 126, 241, 291, 711, 751, 755 |
| HspAI | GCGC | 2 cut(s) | 433, 539 |
| LmnI | GCTCC | 1 cut(s) | 818 |
| LweI | GCATC | 1 cut(s) | 409 |
| MaeI | CTAG | 2 cut(s) | 675, 720 |
| MaeII | ACGT | 3 cut(s) | 259, 661, 875 |
| MaeIII | GTNAC | 1 cut(s) | 759 |
| MfeI | CAATTG | 1 cut(s) | 470 |
| MhlI | GDGCHC | 2 cut(s) | 691, 849 |
| MluCI | AATT | 6 cut(s) | 73, 172, 209, 406, 470, 484 |
| MnlI | CCTC | 5 cut(s) | 45, 342, 675, 827, 860 |
| Mph1103I | ATGCAT | 1 cut(s) | 753 |
| MseI | TTAA | 5 cut(s) | 186, 269, 492, 519, 656 |
| MspR9I | CCNGG | 1 cut(s) | 321 |
| MunI | CAATTG | 1 cut(s) | 470 |
| Mva1269I | GAATGC | 1 cut(s) | 703 |
| MvaI | CCWGG | 1 cut(s) | 321 |
| NcoI | CCATGG | 1 cut(s) | 237 |
| NlaIII | CATG | 6 cut(s) | 126, 241, 291, 711, 751, 755 |
| NsiI | ATGCAT | 1 cut(s) | 753 |
| NspI | RCATGY | 1 cut(s) | 751 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 784 |
| PctI | GAATGC | 1 cut(s) | 703 |
| PshBI | ATTAAT | 1 cut(s) | 492 |
| Psp6I | CCWGG | 1 cut(s) | 319 |
| PspFI | CCCAGC | 1 cut(s) | 504 |
| PspGI | CCWGG | 1 cut(s) | 319 |
| PstI | CTGCAG | 1 cut(s) | 844 |
| RsaI | GTAC | 1 cut(s) | 878 |
| RsaNI | GTAC | 1 cut(s) | 877 |
| SaqAI | TTAA | 5 cut(s) | 186, 269, 492, 519, 656 |
| ScrFI | CCNGG | 1 cut(s) | 321 |
| SduI | GDGCHC | 2 cut(s) | 691, 849 |
| SetI | ASST | 8 cut(s) | 65, 262, 460, 602, 633, 664, 852, 878 |
| SfaNI | GCATC | 1 cut(s) | 409 |
| SfcI | CTRYAG | 1 cut(s) | 840 |
| Sse9I | AATT | 6 cut(s) | 73, 172, 209, 406, 470, 484 |
| SspI | AATATT | 1 cut(s) | 442 |
| SspMI | CTAG | 2 cut(s) | 675, 720 |
| StyD4I | CCNGG | 1 cut(s) | 319 |
| StyI | CCWWGG | 2 cut(s) | 237, 683 |
| TaaI | ACNGT | 5 cut(s) | 43, 118, 528, 637, 832 |
| TaiI | ACGT | 3 cut(s) | 262, 664, 878 |
| TaqI | TCGA | 2 cut(s) | 256, 778 |
| TasI | AATT | 6 cut(s) | 73, 172, 209, 406, 470, 484 |
| Tru1I | TTAA | 5 cut(s) | 186, 269, 492, 519, 656 |
| Tru9I | TTAA | 5 cut(s) | 186, 269, 492, 519, 656 |
| TscAI | CASTG | 3 cut(s) | 48, 154, 642 |
| TspDTI | ATGAA | 2 cut(s) | 317, 696 |
| TspRI | CASTG | 3 cut(s) | 48, 154, 642 |
| VspI | ATTAAT | 1 cut(s) | 492 |
| XapI | RAATTY | 4 cut(s) | 73, 172, 209, 484 |
| XceI | RCATGY | 1 cut(s) | 751 |
| XspI | CTAG | 2 cut(s) | 675, 720 |
| ZraI | GACGTC | 1 cut(s) | 260 |
| Zsp2I | ATGCAT | 1 cut(s) | 753 |