Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6817 | PF20680 | 29 - 114 | 7.1e-30 | Domain of unknown function (DUF6817) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 279 |
| AccB1I | GGYRCC | 1 cut(s) | 817 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 814 |
| AccI | GTMKAC | 1 cut(s) | 150 |
| AccII | CGCG | 5 cut(s) | 39, 273, 396, 545, 605 |
| AclWI | GGATC | 3 cut(s) | 310, 494, 545 |
| AcoI | YGGCCR | 1 cut(s) | 268 |
| AcyI | GRCGYC | 2 cut(s) | 276, 774 |
| AfeI | AGCGCT | 1 cut(s) | 311 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 266, 295, 482, 674, 708, 739, 814, 889, 962 |
| AgsI | TTSAA | 2 cut(s) | 708, 1132 |
| AjnI | CCWGG | 7 cut(s) | 144, 597, 667, 842, 875, 1115, 1163 |
| AluBI | AGCT | 7 cut(s) | 10, 46, 391, 659, 872, 896, 1034 |
| AluI | AGCT | 7 cut(s) | 10, 46, 391, 659, 872, 896, 1034 |
| Alw21I | GWGCWC | 3 cut(s) | 144, 393, 661 |
| Alw26I | GTCTC | 1 cut(s) | 1031 |
| AlwI | GGATC | 3 cut(s) | 310, 494, 545 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 469 |
| Ama87I | CYCGRG | 2 cut(s) | 632, 792 |
| Aor51HI | AGCGCT | 1 cut(s) | 311 |
| AoxI | GGCC | 9 cut(s) | 180, 205, 268, 511, 665, 1113, 1134, 1151, 1183 |
| ApeKI | GCWGC | 4 cut(s) | 302, 343, 716, 872 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 572, 593, 604, 625 |
| AspLEI | GCGC | 3 cut(s) | 39, 312, 607 |
| AspS9I | GGNCC | 6 cut(s) | 181, 511, 880, 1113, 1135, 1183 |
| AsuC2I | CCSGG | 1 cut(s) | 684 |
| AsuHPI | GGTGA | 3 cut(s) | 53, 119, 782 |
| AvaI | CYCGRG | 2 cut(s) | 632, 792 |
| AvaII | GGWCC | 1 cut(s) | 880 |
| BanI | GGYRCC | 1 cut(s) | 817 |
| BanII | GRGCYC | 3 cut(s) | 393, 661, 690 |
| BauI | CACGAG | 1 cut(s) | 812 |
| Bbv12I | GWGCWC | 3 cut(s) | 144, 393, 661 |
| BbvCI | CCTCAGC | 1 cut(s) | 1046 |
| BbvI | GCAGC | 4 cut(s) | 289, 355, 703, 859 |
| BccI | CCATC | 3 cut(s) | 668, 706, 1095 |
| BceAI | ACGGC | 1 cut(s) | 142 |
| BciT130I | CCWGG | 7 cut(s) | 146, 599, 669, 844, 877, 1117, 1165 |
| BcnI | CCSGG | 1 cut(s) | 684 |
| BcoDI | GTCTC | 1 cut(s) | 1031 |
| BfoI | RGCGCY | 1 cut(s) | 313 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 204 |
| Bme1390I | CCNGG | 8 cut(s) | 146, 599, 669, 684, 844, 877, 1117, 1165 |
| Bme18I | GGWCC | 1 cut(s) | 880 |
| BmeT110I | CYCGRG | 2 cut(s) | 632, 792 |
| BmgT120I | GGNCC | 6 cut(s) | 181, 511, 880, 1113, 1135, 1183 |
| BmiI | GGNNCC | 5 cut(s) | 103, 183, 474, 819, 881 |
| BmrFI | CCNGG | 8 cut(s) | 146, 599, 669, 684, 844, 877, 1117, 1165 |
| BmrI | ACTGGG | 1 cut(s) | 651 |
| BmsI | GCATC | 2 cut(s) | 339, 844 |
| BmuI | ACTGGG | 1 cut(s) | 651 |
| BpmI | CTGGAG | 3 cut(s) | 68, 158, 469 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1046 |
| BpuEI | CTTGAG | 2 cut(s) | 389, 917 |
| BpuMI | CCSGG | 1 cut(s) | 684 |
| BsaHI | GRCGYC | 2 cut(s) | 276, 774 |
| BsaJI | CCNNGG | 7 cut(s) | 338, 564, 683, 843, 876, 1116, 1164 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 266, 295, 482, 674, 708, 739, 814, 889, 962 |
| Bse118I | RCCGGY | 2 cut(s) | 104, 266 |
| Bse1I | ACTGG | 3 cut(s) | 452, 646, 824 |
| BseBI | CCWGG | 7 cut(s) | 146, 599, 669, 844, 877, 1117, 1165 |
| BseDI | CCNNGG | 7 cut(s) | 338, 564, 683, 843, 876, 1116, 1164 |
| BseGI | GGATG | 6 cut(s) | 351, 699, 717, 859, 1092, 1106 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 266, 295, 482, 674, 708, 739, 814, 889, 962 |
| BseMII | CTCAG | 3 cut(s) | 1014, 1026, 1037 |
| BseNI | ACTGG | 3 cut(s) | 452, 646, 824 |
| BseRI | GAGGAG | 3 cut(s) | 547, 722, 1031 |
| BseX3I | CGGCCG | 1 cut(s) | 268 |
| BseXI | GCAGC | 4 cut(s) | 289, 355, 703, 859 |
| BseYI | CCCAGC | 1 cut(s) | 857 |
| BsgI | GTGCAG | 3 cut(s) | 482, 702, 823 |
| Bsh1236I | CGCG | 5 cut(s) | 39, 273, 396, 545, 605 |
| Bsh1285I | CGRYCG | 2 cut(s) | 57, 271 |
| BshFI | GGCC | 9 cut(s) | 182, 207, 270, 513, 667, 1115, 1136, 1153, 1185 |
| BshNI | GGYRCC | 1 cut(s) | 817 |
| BsiEI | CGRYCG | 2 cut(s) | 57, 271 |
| BsiHKAI | GWGCWC | 3 cut(s) | 144, 393, 661 |
| BsiHKCI | CYCGRG | 2 cut(s) | 632, 792 |
| BsiSI | CCGG | 3 cut(s) | 105, 267, 683 |
| BslFI | GGGAC | 3 cut(s) | 320, 893, 1091 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 266, 295, 482, 674, 708, 739, 814, 889, 962 |
| BsmAI | GTCTC | 1 cut(s) | 1031 |
| BsmFI | GGGAC | 3 cut(s) | 320, 893, 1091 |
| BsmI | GAATGC | 2 cut(s) | 162, 1170 |
| BsnI | GGCC | 9 cut(s) | 182, 207, 270, 513, 667, 1115, 1136, 1153, 1185 |
| BsoBI | CYCGRG | 2 cut(s) | 632, 792 |
| Bsp1286I | GDGCHC | 4 cut(s) | 144, 393, 661, 690 |
| Bsp143I | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| Bsp19I | CCATGG | 1 cut(s) | 564 |
| Bsp68I | TCGCGA | 1 cut(s) | 545 |
| BspANI | GGCC | 9 cut(s) | 182, 207, 270, 513, 667, 1115, 1136, 1153, 1185 |
| BspCNI | CTCAG | 3 cut(s) | 1015, 1027, 1038 |
| BspFNI | CGCG | 5 cut(s) | 39, 273, 396, 545, 605 |
| BspLI | GGNNCC | 5 cut(s) | 103, 183, 474, 819, 881 |
| BspPI | GGATC | 3 cut(s) | 310, 494, 545 |
| BspT107I | GGYRCC | 1 cut(s) | 817 |
| BsrFI | RCCGGY | 2 cut(s) | 104, 266 |
| BsrI | ACTGG | 3 cut(s) | 452, 646, 824 |
| BssAI | RCCGGY | 2 cut(s) | 104, 266 |
| BssECI | CCNNGG | 7 cut(s) | 338, 564, 683, 843, 876, 1116, 1164 |
| BssMI | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| BssNI | GRCGYC | 2 cut(s) | 276, 774 |
| BssSI | CACGAG | 1 cut(s) | 812 |
| BssT1I | CCWWGG | 2 cut(s) | 338, 564 |
| Bst2BI | CACGAG | 1 cut(s) | 812 |
| Bst2UI | CCWGG | 7 cut(s) | 146, 599, 669, 844, 877, 1117, 1165 |
| Bst4CI | ACNGT | 1 cut(s) | 588 |
| Bst6I | CTCTTC | 2 cut(s) | 215, 374 |
| BstACI | GRCGYC | 2 cut(s) | 276, 774 |
| BstC8I | GCNNGC | 2 cut(s) | 116, 680 |
| BstDEI | CTNAG | 3 cut(s) | 1023, 1035, 1046 |
| BstDSI | CCRYGG | 1 cut(s) | 564 |
| BstF5I | GGATG | 6 cut(s) | 351, 699, 717, 859, 1092, 1106 |
| BstFNI | CGCG | 5 cut(s) | 39, 273, 396, 545, 605 |
| BstH2I | RGCGCY | 1 cut(s) | 313 |
| BstHHI | GCGC | 3 cut(s) | 39, 312, 607 |
| BstKTI | GATC | 5 cut(s) | 57, 318, 489, 540, 1148 |
| BstMAI | GTCTC | 1 cut(s) | 1031 |
| BstMBI | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| BstMCI | CGRYCG | 2 cut(s) | 57, 271 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 43, 204 |
| BstNI | CCWGG | 7 cut(s) | 146, 599, 669, 844, 877, 1117, 1165 |
| BstNSI | RCATGY | 1 cut(s) | 977 |
| BstSCI | CCNGG | 8 cut(s) | 144, 597, 667, 682, 842, 875, 1115, 1163 |
| BstUI | CGCG | 5 cut(s) | 39, 273, 396, 545, 605 |
| BstV1I | GCAGC | 4 cut(s) | 289, 355, 703, 859 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 590, 850 |
| BstZI | CGGCCG | 1 cut(s) | 268 |
| BsuRI | GGCC | 9 cut(s) | 182, 207, 270, 513, 667, 1115, 1136, 1153, 1185 |
| BtgI | CCRYGG | 1 cut(s) | 564 |
| BtgZI | GCGATG | 1 cut(s) | 687 |
| BtsCI | GGATG | 6 cut(s) | 351, 699, 717, 859, 1092, 1106 |
| BtsI | GCAGTG | 1 cut(s) | 926 |
| BtsIMutI | CAGTG | 3 cut(s) | 639, 831, 926 |
| BtuMI | TCGCGA | 1 cut(s) | 545 |
| Cac8I | GCNNGC | 2 cut(s) | 116, 680 |
| CaiI | CAGNNNCTG | 1 cut(s) | 469 |
| CfoI | GCGC | 3 cut(s) | 39, 312, 607 |
| Cfr10I | RCCGGY | 2 cut(s) | 104, 266 |
| Cfr13I | GGNCC | 6 cut(s) | 181, 511, 880, 1113, 1135, 1183 |
| CseI | GACGC | 3 cut(s) | 611, 782, 1009 |
| CsiI | ACCWGGT | 1 cut(s) | 144 |
| CviAII | CATG | 4 cut(s) | 290, 565, 974, 1149 |
| DdeI | CTNAG | 3 cut(s) | 1023, 1035, 1046 |
| DpnI | GATC | 5 cut(s) | 56, 317, 488, 539, 1147 |
| DpnII | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| EaeI | YGGCCR | 1 cut(s) | 268 |
| EagI | CGGCCG | 1 cut(s) | 268 |
| Eam1104I | CTCTTC | 2 cut(s) | 215, 374 |
| EarI | CTCTTC | 2 cut(s) | 215, 374 |
| Ecl136II | GAGCTC | 2 cut(s) | 391, 659 |
| EclXI | CGGCCG | 1 cut(s) | 268 |
| Eco130I | CCWWGG | 2 cut(s) | 338, 564 |
| Eco24I | GRGCYC | 3 cut(s) | 393, 661, 690 |
| Eco47I | GGWCC | 1 cut(s) | 880 |
| Eco47III | AGCGCT | 1 cut(s) | 311 |
| Eco52I | CGGCCG | 1 cut(s) | 268 |
| Eco53kI | GAGCTC | 2 cut(s) | 391, 659 |
| Eco88I | CYCGRG | 2 cut(s) | 632, 792 |
| EcoICRI | GAGCTC | 2 cut(s) | 391, 659 |
| EcoO109I | RGGNCCY | 2 cut(s) | 181, 880 |
| EcoRII | CCWGG | 7 cut(s) | 144, 597, 667, 842, 875, 1115, 1163 |
| EcoT14I | CCWWGG | 2 cut(s) | 338, 564 |
| EcoT38I | GRGCYC | 3 cut(s) | 393, 661, 690 |
| ErhI | CCWWGG | 2 cut(s) | 338, 564 |
| FaeI | CATG | 4 cut(s) | 293, 568, 977, 1152 |
| FaqI | GGGAC | 3 cut(s) | 320, 893, 1091 |
| FatI | CATG | 4 cut(s) | 289, 564, 973, 1148 |
| FblI | GTMKAC | 1 cut(s) | 150 |
| FokI | GGATG | 6 cut(s) | 338, 706, 724, 866, 1099, 1113 |
| FriOI | GRGCYC | 3 cut(s) | 393, 661, 690 |
| GlaI | GCGC | 3 cut(s) | 38, 311, 606 |
| GsaI | CCCAGC | 1 cut(s) | 861 |
| GsuI | CTGGAG | 3 cut(s) | 68, 158, 469 |
| HaeII | RGCGCY | 1 cut(s) | 313 |
| HaeIII | GGCC | 9 cut(s) | 182, 207, 270, 513, 667, 1115, 1136, 1153, 1185 |
| HapII | CCGG | 3 cut(s) | 105, 267, 683 |
| HgaI | GACGC | 3 cut(s) | 611, 782, 1009 |
| HhaI | GCGC | 3 cut(s) | 39, 312, 607 |
| Hin1I | GRCGYC | 2 cut(s) | 276, 774 |
| Hin1II | CATG | 4 cut(s) | 293, 568, 977, 1152 |
| Hin6I | GCGC | 3 cut(s) | 37, 310, 605 |
| HinP1I | GCGC | 3 cut(s) | 37, 310, 605 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HinfI | GANTC | 8 cut(s) | 17, 50, 64, 188, 466, 905, 911, 917 |
| HpaII | CCGG | 3 cut(s) | 105, 267, 683 |
| HphI | GGTGA | 3 cut(s) | 53, 119, 782 |
| Hpy166II | GTNNAC | 3 cut(s) | 151, 241, 639 |
| Hpy188I | TCNGA | 7 cut(s) | 415, 433, 491, 910, 916, 965, 999 |
| Hpy188III | TCNNGA | 8 cut(s) | 137, 544, 691, 761, 792, 794, 934, 1129 |
| Hpy8I | GTNNAC | 3 cut(s) | 151, 241, 639 |
| Hpy99I | CGWCG | 7 cut(s) | 278, 281, 386, 389, 545, 550, 1193 |
| HpyAV | CCTTC | 5 cut(s) | 81, 172, 270, 374, 1126 |
| HpyCH4III | ACNGT | 1 cut(s) | 588 |
| HpyCH4IV | ACGT | 2 cut(s) | 276, 548 |
| HpyCH4V | TGCA | 7 cut(s) | 91, 330, 444, 463, 719, 840, 942 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 43, 204 |
| HpyF3I | CTNAG | 3 cut(s) | 1023, 1035, 1046 |
| HpySE526I | ACGT | 2 cut(s) | 276, 548 |
| Hsp92I | GRCGYC | 2 cut(s) | 276, 774 |
| Hsp92II | CATG | 4 cut(s) | 293, 568, 977, 1152 |
| HspAI | GCGC | 3 cut(s) | 37, 310, 605 |
| Kzo9I | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| LmnI | GCTCC | 6 cut(s) | 101, 139, 396, 656, 735, 862 |
| Lsp1109I | GCAGC | 4 cut(s) | 289, 355, 703, 859 |
| LweI | GCATC | 2 cut(s) | 339, 844 |
| MabI | ACCWGGT | 1 cut(s) | 144 |
| MaeII | ACGT | 2 cut(s) | 276, 548 |
| MaeIII | GTNAC | 1 cut(s) | 770 |
| MalI | GATC | 5 cut(s) | 56, 317, 488, 539, 1147 |
| MboI | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| MboII | GAAGA | 3 cut(s) | 202, 361, 466 |
| MhlI | GDGCHC | 4 cut(s) | 144, 393, 661, 690 |
| MluCI | AATT | 3 cut(s) | 229, 439, 866 |
| MlyI | GAGTC | 3 cut(s) | 26, 59, 475 |
| MmeI | TCCRAC | 2 cut(s) | 79, 832 |
| MspI | CCGG | 3 cut(s) | 105, 267, 683 |
| MspR9I | CCNGG | 8 cut(s) | 146, 599, 669, 684, 844, 877, 1117, 1165 |
| Mva1269I | GAATGC | 2 cut(s) | 162, 1170 |
| MvaI | CCWGG | 7 cut(s) | 146, 599, 669, 844, 877, 1117, 1165 |
| MvnI | CGCG | 5 cut(s) | 39, 273, 396, 545, 605 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 43, 204 |
| NciI | CCSGG | 1 cut(s) | 684 |
| NcoI | CCATGG | 1 cut(s) | 564 |
| NdeII | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| NlaIII | CATG | 4 cut(s) | 293, 568, 977, 1152 |
| NlaIV | GGNNCC | 5 cut(s) | 103, 183, 474, 819, 881 |
| NmeAIII | GCCGAG | 1 cut(s) | 331 |
| NmuCI | GTSAC | 1 cut(s) | 770 |
| NruI | TCGCGA | 1 cut(s) | 545 |
| NspI | RCATGY | 1 cut(s) | 977 |
| PaeR7I | CTCGAG | 2 cut(s) | 632, 792 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 252, 393, 630 |
| PctI | GAATGC | 2 cut(s) | 162, 1170 |
| PfeI | GAWTC | 5 cut(s) | 64, 188, 905, 911, 917 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 814 |
| PfoI | TCCNGGA | 1 cut(s) | 597 |
| Ple19I | CGATCG | 1 cut(s) | 57 |
| PleI | GAGTC | 3 cut(s) | 25, 58, 474 |
| PpsI | GAGTC | 3 cut(s) | 25, 58, 474 |
| PpuMI | RGGWCCY | 1 cut(s) | 880 |
| Psp124BI | GAGCTC | 2 cut(s) | 393, 661 |
| Psp5II | RGGWCCY | 1 cut(s) | 880 |
| Psp6I | CCWGG | 7 cut(s) | 144, 597, 667, 842, 875, 1115, 1163 |
| PspFI | CCCAGC | 1 cut(s) | 857 |
| PspGI | CCWGG | 7 cut(s) | 144, 597, 667, 842, 875, 1115, 1163 |
| PspN4I | GGNNCC | 5 cut(s) | 103, 183, 474, 819, 881 |
| PspPI | GGNCC | 6 cut(s) | 181, 511, 880, 1113, 1135, 1183 |
| PspPPI | RGGWCCY | 1 cut(s) | 880 |
| PspXI | VCTCGAGB | 1 cut(s) | 632 |
| PstNI | CAGNNNCTG | 1 cut(s) | 469 |
| PvuI | CGATCG | 1 cut(s) | 57 |
| RruI | TCGCGA | 1 cut(s) | 545 |
| SacI | GAGCTC | 2 cut(s) | 393, 661 |
| Sau3AI | GATC | 5 cut(s) | 54, 315, 486, 537, 1145 |
| Sau96I | GGNCC | 6 cut(s) | 181, 511, 880, 1113, 1135, 1183 |
| SchI | GAGTC | 3 cut(s) | 26, 59, 475 |
| ScrFI | CCNGG | 8 cut(s) | 146, 599, 669, 684, 844, 877, 1117, 1165 |
| SduI | GDGCHC | 4 cut(s) | 144, 393, 661, 690 |
| SexAI | ACCWGGT | 1 cut(s) | 144 |
| SfaNI | GCATC | 2 cut(s) | 339, 844 |
| Sfr274I | CTCGAG | 2 cut(s) | 632, 792 |
| SinI | GGWCC | 1 cut(s) | 880 |
| SlaI | CTCGAG | 2 cut(s) | 632, 792 |
| SmlI | CTYRAG | 4 cut(s) | 404, 632, 792, 932 |
| SmoI | CTYRAG | 4 cut(s) | 404, 632, 792, 932 |
| Sse9I | AATT | 3 cut(s) | 229, 439, 866 |
| SstI | GAGCTC | 2 cut(s) | 393, 661 |
| StyD4I | CCNGG | 8 cut(s) | 144, 597, 667, 682, 842, 875, 1115, 1163 |
| StyI | CCWWGG | 2 cut(s) | 338, 564 |
| TaaI | ACNGT | 1 cut(s) | 588 |
| TaiI | ACGT | 2 cut(s) | 279, 551 |
| TaqI | TCGA | 8 cut(s) | 53, 57, 255, 530, 633, 760, 793, 1191 |
| TasI | AATT | 3 cut(s) | 229, 439, 866 |
| TauI | GCSGC | 8 cut(s) | 207, 273, 288, 422, 425, 631, 823, 973 |
| TfiI | GAWTC | 5 cut(s) | 64, 188, 905, 911, 917 |
| TscAI | CASTG | 3 cut(s) | 646, 831, 933 |
| TseFI | GTSAC | 1 cut(s) | 770 |
| TseI | GCWGC | 4 cut(s) | 302, 343, 716, 872 |
| Tsp45I | GTSAC | 1 cut(s) | 770 |
| TspDTI | ATGAA | 4 cut(s) | 452, 710, 813, 949 |
| TspGWI | ACGGA | 2 cut(s) | 181, 633 |
| TspRI | CASTG | 3 cut(s) | 646, 831, 933 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 814 |
| VpaK11BI | GGWCC | 1 cut(s) | 880 |
| XceI | RCATGY | 1 cut(s) | 977 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 709 |
| XhoI | CTCGAG | 2 cut(s) | 632, 792 |
| XmiI | GTMKAC | 1 cut(s) | 150 |
| ZraI | GACGTC | 1 cut(s) | 277 |