ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF617 | PF04759 | 74 - 237 | 3.4e-65 | Protein of unknown function, DUF617 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 554 |
| Acc36I | ACCTGC | 1 cut(s) | 612 |
| Acc65I | GGTACC | 1 cut(s) | 240 |
| AccB1I | GGYRCC | 3 cut(s) | 81, 227, 240 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 17 |
| AccBSI | CCGCTC | 1 cut(s) | 93 |
| AciI | CCGC | 3 cut(s) | 91, 476, 536 |
| AclWI | GGATC | 1 cut(s) | 106 |
| AcoI | YGGCCR | 2 cut(s) | 333, 682 |
| AcsI | RAATTY | 2 cut(s) | 170, 640 |
| AcyI | GRCGYC | 2 cut(s) | 82, 190 |
| AfaI | GTAC | 4 cut(s) | 72, 242, 449, 602 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 17, 237, 337 |
| AgsI | TTSAA | 1 cut(s) | 517 |
| AjnI | CCWGG | 3 cut(s) | 330, 385, 684 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 488, 520 |
| AleI | CACNNNNGTG | 1 cut(s) | 434 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 96, 128 |
| AluBI | AGCT | 7 cut(s) | 198, 314, 417, 512, 571, 611, 691 |
| AluI | AGCT | 7 cut(s) | 198, 314, 417, 512, 571, 611, 691 |
| AlwI | GGATC | 1 cut(s) | 106 |
| Ama87I | CYCGRG | 2 cut(s) | 305, 371 |
| AoxI | GGCC | 4 cut(s) | 3, 333, 488, 682 |
| ApoI | RAATTY | 2 cut(s) | 170, 640 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 269, 301 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 651 |
| Asp718I | GGTACC | 1 cut(s) | 240 |
| AspLEI | GCGC | 2 cut(s) | 41, 84 |
| AsuHPI | GGTGA | 4 cut(s) | 37, 143, 396, 593 |
| AvaI | CYCGRG | 2 cut(s) | 305, 371 |
| BalI | TGGCCA | 2 cut(s) | 335, 684 |
| BanI | GGYRCC | 3 cut(s) | 81, 227, 240 |
| BbsI | GAAGAC | 1 cut(s) | 369 |
| BccI | CCATC | 3 cut(s) | 162, 517, 572 |
| BceAI | ACGGC | 1 cut(s) | 26 |
| BciT130I | CCWGG | 3 cut(s) | 332, 387, 686 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BfoI | RGCGCY | 2 cut(s) | 42, 85 |
| BfuAI | ACCTGC | 1 cut(s) | 612 |
| BlpI | GCTNAGC | 1 cut(s) | 572 |
| Bme1390I | CCNGG | 3 cut(s) | 332, 387, 686 |
| BmeT110I | CYCGRG | 2 cut(s) | 305, 371 |
| BmiI | GGNNCC | 3 cut(s) | 83, 229, 242 |
| BmrFI | CCNGG | 3 cut(s) | 332, 387, 686 |
| BmsI | GCATC | 1 cut(s) | 276 |
| BpiI | GAAGAC | 1 cut(s) | 369 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 342, 374 |
| BpmI | CTGGAG | 2 cut(s) | 369, 397 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 572 |
| BsaBI | GATNNNNATC | 1 cut(s) | 147 |
| BsaHI | GRCGYC | 2 cut(s) | 82, 190 |
| BsaJI | CCNNGG | 2 cut(s) | 336, 386 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 17, 237, 337 |
| Bse118I | RCCGGY | 1 cut(s) | 224 |
| Bse8I | GATNNNNATC | 1 cut(s) | 147 |
| BseBI | CCWGG | 3 cut(s) | 332, 387, 686 |
| BseDI | CCNNGG | 2 cut(s) | 336, 386 |
| BseGI | GGATG | 1 cut(s) | 267 |
| BseJI | GATNNNNATC | 1 cut(s) | 147 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 17, 237, 337 |
| BseMII | CTCAG | 1 cut(s) | 373 |
| BsgI | GTGCAG | 2 cut(s) | 112, 564 |
| BshFI | GGCC | 4 cut(s) | 5, 335, 490, 684 |
| BshNI | GGYRCC | 3 cut(s) | 81, 227, 240 |
| BsiHKCI | CYCGRG | 2 cut(s) | 305, 371 |
| BsiSI | CCGG | 2 cut(s) | 225, 434 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 17, 237, 337 |
| BsnI | GGCC | 4 cut(s) | 5, 335, 490, 684 |
| BsoBI | CYCGRG | 2 cut(s) | 305, 371 |
| Bsp143I | GATC | 2 cut(s) | 111, 145 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 572 |
| BspACI | CCGC | 3 cut(s) | 91, 476, 536 |
| BspANI | GGCC | 4 cut(s) | 5, 335, 490, 684 |
| BspCNI | CTCAG | 1 cut(s) | 372 |
| BspLI | GGNNCC | 3 cut(s) | 83, 229, 242 |
| BspMI | ACCTGC | 1 cut(s) | 612 |
| BspPI | GGATC | 1 cut(s) | 106 |
| BspT107I | GGYRCC | 3 cut(s) | 81, 227, 240 |
| BsrBI | CCGCTC | 1 cut(s) | 93 |
| BsrFI | RCCGGY | 1 cut(s) | 224 |
| BssAI | RCCGGY | 1 cut(s) | 224 |
| BssECI | CCNNGG | 2 cut(s) | 336, 386 |
| BssMI | GATC | 2 cut(s) | 111, 145 |
| BssNI | GRCGYC | 2 cut(s) | 82, 190 |
| BssT1I | CCWWGG | 1 cut(s) | 336 |
| Bst2UI | CCWGG | 3 cut(s) | 332, 387, 686 |
| Bst4CI | ACNGT | 5 cut(s) | 52, 75, 328, 398, 710 |
| BstACI | GRCGYC | 2 cut(s) | 82, 190 |
| BstC8I | GCNNGC | 1 cut(s) | 609 |
| BstDEI | CTNAG | 3 cut(s) | 359, 572, 692 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 335 |
| BstF5I | GGATG | 1 cut(s) | 267 |
| BstH2I | RGCGCY | 2 cut(s) | 42, 85 |
| BstHHI | GCGC | 2 cut(s) | 41, 84 |
| BstKTI | GATC | 2 cut(s) | 114, 148 |
| BstMBI | GATC | 2 cut(s) | 111, 145 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 90, 496, 542 |
| BstNI | CCWGG | 3 cut(s) | 332, 387, 686 |
| BstSCI | CCNGG | 3 cut(s) | 330, 385, 684 |
| BstV2I | GAAGAC | 1 cut(s) | 369 |
| BsuRI | GGCC | 4 cut(s) | 5, 335, 490, 684 |
| BtgZI | GCGATG | 1 cut(s) | 591 |
| BtsCI | GGATG | 1 cut(s) | 267 |
| BtsI | GCAGTG | 1 cut(s) | 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 124 |
| BveI | ACCTGC | 1 cut(s) | 612 |
| Cac8I | GCNNGC | 1 cut(s) | 609 |
| CfoI | GCGC | 2 cut(s) | 41, 84 |
| Cfr10I | RCCGGY | 1 cut(s) | 224 |
| CseI | GACGC | 1 cut(s) | 179 |
| Csp6I | GTAC | 4 cut(s) | 71, 241, 448, 601 |
| CviAII | CATG | 2 cut(s) | 78, 500 |
| CviQI | GTAC | 4 cut(s) | 71, 241, 448, 601 |
| DdeI | CTNAG | 3 cut(s) | 359, 572, 692 |
| DinI | GGCGCC | 1 cut(s) | 83 |
| DpnI | GATC | 2 cut(s) | 113, 147 |
| DpnII | GATC | 2 cut(s) | 111, 145 |
| EaeI | YGGCCR | 2 cut(s) | 333, 682 |
| Eco130I | CCWWGG | 1 cut(s) | 336 |
| Eco147I | AGGCCT | 1 cut(s) | 490 |
| Eco88I | CYCGRG | 2 cut(s) | 305, 371 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 335 |
| EcoRII | CCWGG | 3 cut(s) | 330, 385, 684 |
| EcoT14I | CCWWGG | 1 cut(s) | 336 |
| EgeI | GGCGCC | 1 cut(s) | 83 |
| EheI | GGCGCC | 1 cut(s) | 83 |
| ErhI | CCWWGG | 1 cut(s) | 336 |
| FaeI | CATG | 2 cut(s) | 81, 503 |
| FaiI | YATR | 9 cut(s) | 79, 221, 233, 393, 446, 474, 501, 554, 599 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 187, 219, 488, 520 |
| FatI | CATG | 2 cut(s) | 77, 499 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| FokI | GGATG | 1 cut(s) | 254 |
| GlaI | GCGC | 2 cut(s) | 40, 83 |
| GsuI | CTGGAG | 2 cut(s) | 369, 397 |
| HaeII | RGCGCY | 2 cut(s) | 42, 85 |
| HaeIII | GGCC | 4 cut(s) | 5, 335, 490, 684 |
| HapII | CCGG | 2 cut(s) | 225, 434 |
| HgaI | GACGC | 1 cut(s) | 179 |
| HhaI | GCGC | 2 cut(s) | 41, 84 |
| Hin1I | GRCGYC | 2 cut(s) | 82, 190 |
| Hin1II | CATG | 2 cut(s) | 81, 503 |
| Hin6I | GCGC | 2 cut(s) | 39, 82 |
| HinP1I | GCGC | 2 cut(s) | 39, 82 |
| HindIII | AAGCTT | 2 cut(s) | 196, 510 |
| HinfI | GANTC | 2 cut(s) | 374, 647 |
| HpaII | CCGG | 2 cut(s) | 225, 434 |
| HphI | GGTGA | 4 cut(s) | 37, 143, 396, 593 |
| Hpy166II | GTNNAC | 2 cut(s) | 429, 441 |
| Hpy188I | TCNGA | 2 cut(s) | 362, 646 |
| Hpy188III | TCNNGA | 3 cut(s) | 109, 158, 714 |
| Hpy8I | GTNNAC | 2 cut(s) | 429, 441 |
| Hpy99I | CGWCG | 1 cut(s) | 56 |
| HpyAV | CCTTC | 3 cut(s) | 95, 142, 480 |
| HpyCH4III | ACNGT | 5 cut(s) | 52, 75, 328, 398, 710 |
| HpyCH4V | TGCA | 5 cut(s) | 129, 267, 346, 453, 545 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 90, 496, 542 |
| HpyF3I | CTNAG | 3 cut(s) | 359, 572, 692 |
| Hsp92I | GRCGYC | 2 cut(s) | 82, 190 |
| Hsp92II | CATG | 2 cut(s) | 81, 503 |
| HspAI | GCGC | 2 cut(s) | 39, 82 |
| KasI | GGCGCC | 1 cut(s) | 81 |
| KpnI | GGTACC | 1 cut(s) | 244 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 2 cut(s) | 111, 145 |
| LmnI | GCTCC | 2 cut(s) | 568, 688 |
| LweI | GCATC | 1 cut(s) | 276 |
| MaeIII | GTNAC | 1 cut(s) | 43 |
| MalI | GATC | 2 cut(s) | 113, 147 |
| MbiI | CCGCTC | 1 cut(s) | 93 |
| MboI | GATC | 2 cut(s) | 111, 145 |
| MboII | GAAGA | 3 cut(s) | 152, 369, 529 |
| MlsI | TGGCCA | 2 cut(s) | 335, 684 |
| MluCI | AATT | 5 cut(s) | 170, 294, 400, 613, 640 |
| MluNI | TGGCCA | 2 cut(s) | 335, 684 |
| Mly113I | GGCGCC | 1 cut(s) | 82 |
| MlyI | GAGTC | 1 cut(s) | 383 |
| MmeI | TCCRAC | 1 cut(s) | 312 |
| MnlI | CCTC | 2 cut(s) | 344, 380 |
| Mox20I | TGGCCA | 2 cut(s) | 335, 684 |
| MroXI | GAANNNNTTC | 1 cut(s) | 651 |
| MscI | TGGCCA | 2 cut(s) | 335, 684 |
| MseI | TTAA | 2 cut(s) | 32, 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 434 |
| Msp20I | TGGCCA | 2 cut(s) | 335, 684 |
| MspI | CCGG | 2 cut(s) | 225, 434 |
| MspR9I | CCNGG | 3 cut(s) | 332, 387, 686 |
| MvaI | CCWGG | 3 cut(s) | 332, 387, 686 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 90, 496, 542 |
| NarI | GGCGCC | 1 cut(s) | 82 |
| NdeII | GATC | 2 cut(s) | 111, 145 |
| NlaIII | CATG | 2 cut(s) | 81, 503 |
| NlaIV | GGNNCC | 3 cut(s) | 83, 229, 242 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| OliI | CACNNNNGTG | 1 cut(s) | 434 |
| PaeR7I | CTCGAG | 2 cut(s) | 305, 371 |
| PceI | AGGCCT | 1 cut(s) | 490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 651 |
| PfeI | GAWTC | 1 cut(s) | 647 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 17 |
| PleI | GAGTC | 1 cut(s) | 382 |
| PluTI | GGCGCC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 382 |
| PsiI | TTATAA | 1 cut(s) | 554 |
| Psp6I | CCWGG | 3 cut(s) | 330, 385, 684 |
| PspGI | CCWGG | 3 cut(s) | 330, 385, 684 |
| PspN4I | GGNNCC | 3 cut(s) | 83, 229, 242 |
| PspXI | VCTCGAGB | 2 cut(s) | 305, 371 |
| RsaI | GTAC | 4 cut(s) | 72, 242, 449, 602 |
| RsaNI | GTAC | 4 cut(s) | 71, 241, 448, 601 |
| RseI | CAYNNNNRTG | 1 cut(s) | 434 |
| SaqAI | TTAA | 2 cut(s) | 32, 480 |
| Sau3AI | GATC | 2 cut(s) | 111, 145 |
| SchI | GAGTC | 1 cut(s) | 383 |
| ScrFI | CCNGG | 3 cut(s) | 332, 387, 686 |
| SetI | ASST | 9 cut(s) | 134, 200, 316, 419, 514, 573, 606, 613, 693 |
| SfaNI | GCATC | 1 cut(s) | 276 |
| SfoI | GGCGCC | 1 cut(s) | 83 |
| Sfr274I | CTCGAG | 2 cut(s) | 305, 371 |
| SlaI | CTCGAG | 2 cut(s) | 305, 371 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 434 |
| SmlI | CTYRAG | 2 cut(s) | 305, 371 |
| SmoI | CTYRAG | 2 cut(s) | 305, 371 |
| Sse9I | AATT | 5 cut(s) | 170, 294, 400, 613, 640 |
| SseBI | AGGCCT | 1 cut(s) | 490 |
| SsiI | CCGC | 3 cut(s) | 91, 476, 536 |
| SspDI | GGCGCC | 1 cut(s) | 81 |
| StuI | AGGCCT | 1 cut(s) | 490 |
| StyD4I | CCNGG | 3 cut(s) | 330, 385, 684 |
| StyI | CCWWGG | 1 cut(s) | 336 |
| TaaI | ACNGT | 5 cut(s) | 52, 75, 328, 398, 710 |
| TaqI | TCGA | 4 cut(s) | 54, 102, 306, 372 |
| TasI | AATT | 5 cut(s) | 170, 294, 400, 613, 640 |
| TatI | WGTACW | 1 cut(s) | 447 |
| TfiI | GAWTC | 1 cut(s) | 647 |
| Tru1I | TTAA | 2 cut(s) | 32, 480 |
| Tru9I | TTAA | 2 cut(s) | 32, 480 |
| TscAI | CASTG | 1 cut(s) | 131 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 1 cut(s) | 644 |
| TspRI | CASTG | 1 cut(s) | 131 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 17 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 335 |
| XapI | RAATTY | 2 cut(s) | 170, 640 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |
| XhoI | CTCGAG | 2 cut(s) | 305, 371 |
| XmnI | GAANNNNTTC | 1 cut(s) | 651 |