Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 373 |
| Acc36I | ACCTGC | 1 cut(s) | 104 |
| AciI | CCGC | 2 cut(s) | 56, 200 |
| AcsI | RAATTY | 1 cut(s) | 254 |
| AcyI | GRCGYC | 2 cut(s) | 370, 483 |
| AfaI | GTAC | 2 cut(s) | 318, 415 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 581 |
| AflIII | ACRYGT | 1 cut(s) | 20 |
| AgsI | TTSAA | 1 cut(s) | 302 |
| AluBI | AGCT | 2 cut(s) | 49, 354 |
| AluI | AGCT | 2 cut(s) | 49, 354 |
| ApeKI | GCWGC | 2 cut(s) | 194, 197 |
| ApoI | RAATTY | 1 cut(s) | 254 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 22 |
| AspLEI | GCGC | 1 cut(s) | 361 |
| AspS9I | GGNCC | 1 cut(s) | 241 |
| AsuHPI | GGTGA | 1 cut(s) | 77 |
| AvaII | GGWCC | 1 cut(s) | 241 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 394, 427 |
| BbvI | GCAGC | 2 cut(s) | 181, 209 |
| BccI | CCATC | 3 cut(s) | 448, 475, 523 |
| BfaI | CTAG | 3 cut(s) | 186, 345, 471 |
| BfmI | CTRYAG | 2 cut(s) | 195, 442 |
| BfuAI | ACCTGC | 1 cut(s) | 104 |
| BisI | GCNGC | 2 cut(s) | 195, 198 |
| BlsI | GCNGC | 2 cut(s) | 196, 199 |
| Bme18I | GGWCC | 1 cut(s) | 241 |
| BmgT120I | GGNCC | 1 cut(s) | 241 |
| BmiI | GGNNCC | 1 cut(s) | 242 |
| BsaHI | GRCGYC | 2 cut(s) | 370, 483 |
| BsaJI | CCNNGG | 1 cut(s) | 320 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 50, 80 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 581 |
| Bse1I | ACTGG | 1 cut(s) | 88 |
| BseDI | CCNNGG | 1 cut(s) | 320 |
| BseGI | GGATG | 1 cut(s) | 515 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 581 |
| BseNI | ACTGG | 1 cut(s) | 88 |
| BseRI | GAGGAG | 1 cut(s) | 297 |
| BseXI | GCAGC | 2 cut(s) | 181, 209 |
| BslFI | GGGAC | 2 cut(s) | 149, 494 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 581 |
| BsmFI | GGGAC | 2 cut(s) | 149, 494 |
| Bsp143I | GATC | 1 cut(s) | 204 |
| BspACI | CCGC | 2 cut(s) | 56, 200 |
| BspLI | GGNNCC | 1 cut(s) | 242 |
| BspMAI | CTGCAG | 1 cut(s) | 199 |
| BspMI | ACCTGC | 1 cut(s) | 104 |
| BsrI | ACTGG | 1 cut(s) | 88 |
| BssECI | CCNNGG | 1 cut(s) | 320 |
| BssMI | GATC | 1 cut(s) | 204 |
| BssNI | GRCGYC | 2 cut(s) | 370, 483 |
| BssT1I | CCWWGG | 1 cut(s) | 320 |
| BstACI | GRCGYC | 2 cut(s) | 370, 483 |
| BstDEI | CTNAG | 1 cut(s) | 407 |
| BstF5I | GGATG | 1 cut(s) | 515 |
| BstHHI | GCGC | 1 cut(s) | 361 |
| BstKTI | GATC | 1 cut(s) | 207 |
| BstMBI | GATC | 1 cut(s) | 204 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 55 |
| BstNSI | RCATGY | 1 cut(s) | 24 |
| BstSFI | CTRYAG | 2 cut(s) | 195, 442 |
| BstV1I | GCAGC | 2 cut(s) | 181, 209 |
| BtsCI | GGATG | 1 cut(s) | 515 |
| BtsIMutI | CAGTG | 1 cut(s) | 95 |
| BveI | ACCTGC | 1 cut(s) | 104 |
| CfoI | GCGC | 1 cut(s) | 361 |
| Cfr13I | GGNCC | 1 cut(s) | 241 |
| CseI | GACGC | 1 cut(s) | 491 |
| Csp6I | GTAC | 2 cut(s) | 317, 414 |
| CviAII | CATG | 3 cut(s) | 21, 237, 332 |
| CviJI | RGCY | 5 cut(s) | 49, 126, 344, 354, 429 |
| CviKI_1 | RGCY | 5 cut(s) | 49, 126, 344, 354, 429 |
| CviQI | GTAC | 2 cut(s) | 317, 414 |
| DdeI | CTNAG | 1 cut(s) | 407 |
| DpnI | GATC | 1 cut(s) | 206 |
| DpnII | GATC | 1 cut(s) | 204 |
| Eco130I | CCWWGG | 1 cut(s) | 320 |
| Eco32I | GATATC | 1 cut(s) | 394 |
| Eco47I | GGWCC | 1 cut(s) | 241 |
| EcoRV | GATATC | 1 cut(s) | 394 |
| EcoT14I | CCWWGG | 1 cut(s) | 320 |
| ErhI | CCWWGG | 1 cut(s) | 320 |
| FaeI | CATG | 3 cut(s) | 24, 240, 335 |
| FaqI | GGGAC | 2 cut(s) | 149, 494 |
| FatI | CATG | 3 cut(s) | 20, 236, 331 |
| FauNDI | CATATG | 2 cut(s) | 260, 490 |
| Fnu4HI | GCNGC | 2 cut(s) | 195, 198 |
| FokI | GGATG | 1 cut(s) | 502 |
| Fsp4HI | GCNGC | 2 cut(s) | 195, 198 |
| FspBI | CTAG | 3 cut(s) | 186, 345, 471 |
| GlaI | GCGC | 1 cut(s) | 360 |
| GluI | GCNGC | 2 cut(s) | 195, 198 |
| HgaI | GACGC | 1 cut(s) | 491 |
| HhaI | GCGC | 1 cut(s) | 361 |
| Hin1I | GRCGYC | 2 cut(s) | 370, 483 |
| Hin1II | CATG | 3 cut(s) | 24, 240, 335 |
| Hin6I | GCGC | 1 cut(s) | 359 |
| HinP1I | GCGC | 1 cut(s) | 359 |
| HinfI | GANTC | 3 cut(s) | 52, 275, 458 |
| HphI | GGTGA | 1 cut(s) | 77 |
| Hpy166II | GTNNAC | 2 cut(s) | 274, 497 |
| Hpy188I | TCNGA | 3 cut(s) | 17, 245, 463 |
| Hpy188III | TCNNGA | 1 cut(s) | 134 |
| Hpy8I | GTNNAC | 2 cut(s) | 274, 497 |
| Hpy99I | CGWCG | 1 cut(s) | 372 |
| HpyCH4IV | ACGT | 2 cut(s) | 370, 502 |
| HpyCH4V | TGCA | 1 cut(s) | 197 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 55 |
| HpyF3I | CTNAG | 1 cut(s) | 407 |
| HpySE526I | ACGT | 2 cut(s) | 370, 502 |
| Hsp92I | GRCGYC | 2 cut(s) | 370, 483 |
| Hsp92II | CATG | 3 cut(s) | 24, 240, 335 |
| HspAI | GCGC | 1 cut(s) | 359 |
| Kzo9I | GATC | 1 cut(s) | 204 |
| LmnI | GCTCC | 2 cut(s) | 173, 593 |
| LpnPI | CCDG | 3 cut(s) | 99, 101, 463 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 209 |
| MaeI | CTAG | 3 cut(s) | 186, 345, 471 |
| MaeII | ACGT | 2 cut(s) | 370, 502 |
| MaeIII | GTNAC | 1 cut(s) | 83 |
| MalI | GATC | 1 cut(s) | 206 |
| MboI | GATC | 1 cut(s) | 204 |
| MboII | GAAGA | 2 cut(s) | 290, 463 |
| MluCI | AATT | 5 cut(s) | 172, 216, 230, 254, 292 |
| MlyI | GAGTC | 2 cut(s) | 46, 269 |
| MmeI | TCCRAC | 1 cut(s) | 246 |
| MnlI | CCTC | 3 cut(s) | 74, 318, 518 |
| MroXI | GAANNNNTTC | 1 cut(s) | 22 |
| MseI | TTAA | 3 cut(s) | 8, 219, 387 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 55 |
| NdeI | CATATG | 2 cut(s) | 260, 490 |
| NdeII | GATC | 1 cut(s) | 204 |
| NlaIII | CATG | 3 cut(s) | 24, 240, 335 |
| NlaIV | GGNNCC | 1 cut(s) | 242 |
| NmuCI | GTSAC | 1 cut(s) | 83 |
| NspI | RCATGY | 1 cut(s) | 24 |
| PciI | ACATGT | 1 cut(s) | 20 |
| PdmI | GAANNNNTTC | 1 cut(s) | 22 |
| PfeI | GAWTC | 1 cut(s) | 458 |
| PkrI | GCNGC | 2 cut(s) | 196, 199 |
| PleI | GAGTC | 2 cut(s) | 46, 269 |
| PpsI | GAGTC | 2 cut(s) | 46, 269 |
| PscI | ACATGT | 1 cut(s) | 20 |
| PspN4I | GGNNCC | 1 cut(s) | 242 |
| PspPI | GGNCC | 1 cut(s) | 241 |
| PstI | CTGCAG | 1 cut(s) | 199 |
| RsaI | GTAC | 2 cut(s) | 318, 415 |
| RsaNI | GTAC | 2 cut(s) | 317, 414 |
| SaqAI | TTAA | 3 cut(s) | 8, 219, 387 |
| SatI | GCNGC | 2 cut(s) | 195, 198 |
| Sau3AI | GATC | 1 cut(s) | 204 |
| Sau96I | GGNCC | 1 cut(s) | 241 |
| SchI | GAGTC | 2 cut(s) | 46, 269 |
| SetI | ASST | 9 cut(s) | 51, 118, 148, 322, 356, 373, 408, 505, 586 |
| SfcI | CTRYAG | 2 cut(s) | 195, 442 |
| SinI | GGWCC | 1 cut(s) | 241 |
| Sse9I | AATT | 5 cut(s) | 172, 216, 230, 254, 292 |
| SsiI | CCGC | 2 cut(s) | 56, 200 |
| SspMI | CTAG | 3 cut(s) | 186, 345, 471 |
| StyI | CCWWGG | 1 cut(s) | 320 |
| TaiI | ACGT | 2 cut(s) | 373, 505 |
| TaqI | TCGA | 1 cut(s) | 400 |
| TasI | AATT | 5 cut(s) | 172, 216, 230, 254, 292 |
| TfiI | GAWTC | 1 cut(s) | 458 |
| Tru1I | TTAA | 3 cut(s) | 8, 219, 387 |
| Tru9I | TTAA | 3 cut(s) | 8, 219, 387 |
| TscAI | CASTG | 1 cut(s) | 95 |
| TseFI | GTSAC | 1 cut(s) | 83 |
| TseI | GCWGC | 2 cut(s) | 194, 197 |
| Tsp45I | GTSAC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 2 cut(s) | 247, 320 |
| TspGWI | ACGGA | 1 cut(s) | 58 |
| TspRI | CASTG | 1 cut(s) | 95 |
| VpaK11BI | GGWCC | 1 cut(s) | 241 |
| XapI | RAATTY | 1 cut(s) | 254 |
| XceI | RCATGY | 1 cut(s) | 24 |
| XmnI | GAANNNNTTC | 1 cut(s) | 22 |
| XspI | CTAG | 3 cut(s) | 186, 345, 471 |
| ZraI | GACGTC | 1 cut(s) | 371 |