Rorug06G0013200

ribonuclease H protein At1g65750-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000031
Physical Location & Seq
Forward (+)
1755033 .. 1758656
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0013200.1

Sequence Viewer

Length: 1218 bp
ATGGCCGACGATCACGACCAAGAAGACACGGCCGTCGTTGAGGAAGAGTACGCCGTCTGGAAGAAGAACACTCCGTTCCTCTACGACCTCATCATCTCCCACCCTCTCGAATGGCCATCTCTCACCGTCCACTGGGTCCCCTCGGCCCCACAGCCCTACTCCGACCCGTCTCTCGCGGTCCACAAGCTCATCCTCGGGACCCACACCTCCGACGACTACCCCAACTACCTCATGGTCGCCGACGCCCTCCTCCCCGCATCTCAACCCAACGTTGACGCCGTTTCCGACGAGCCCACTCTCCCTAAGGTTGAGATTACGCAGAAGATTCGTGTCGATGGGGAAGTGAATAGGGCAAGGTGTATGCTGCAGAAGCCGAATATGGTTGGGGCGAAAACCAGCGGTAGCGAGGTGTATGTGTTTGATTGTACCAAGCAGGGGCTGAAGTCTCAGGATGGCGAGTGTGATCCTGATTTGAGGTTGAGGGGTCATGATAAAGAAGGGTATGGCTTGTCATGGAGTCCCTTTAAGGAGGGTTACCTTTTGAGTGGTTCAAATGATTGTAAAATTTGCTTGTGGGATGTGTCTGCTTTGGCTCAAGATAGAGTGCTTCATCCAATGCATGTTTTTGAGCGTCATGAAAGTGTGGTTAATGATGTATCATGGCATTCGAAGAACGAGAATCTGTTTGGGTCTGTTGGGGACGATTGTCAATTGATGATATGGGACTTGAGAACAAATCAAGCCCAAGACTCTGTCAAAGTTCATGAGAAAGAGGTAAACTATCTATCTTTCCATCCGTGTAATGAGTGGGTTTTGGCTACAGCATCTTCAGACACTACTGTGGGTCTGTTTGATATGCGGAAGCTGACGGTACCATTGCATGCTCTGAGTGGCCACACAGAGGAGGTATTTCAGGTTGAATGGGACCCTAATCATGATACTGTGTTGGCATCTTATGCTGGTGACCGAAGGTTGATAGTTTGGGACCTTAACAGGATTGGGGATGAGCAGTTGGAGGGAGATGGTGATGATGGGCCACCAGAACTTCTGTTTTCACATGGCGGTCATAAAGCAAAGATATCAGATTTCTCATGGAACAAAGAAGTTCCATGGCTCATTTCAAGTGTAGCCGAAGACAACACTCTCCAGGTCTGGCAAATGGCTGATGGCATATACGGTGACGATGATGGGCAAGAAGGGGAAGCTTCTGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

405

Amino Acids

45.43

Weight (kDa)

4.55

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1C_H4-bd PF12265 15 - 85 1.9e-25 Histone-binding protein RBBP4 or subunit C of CAF1 complex
WD40_CDC20-Fz PF24807 111 - 254 2.6e-14 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 129 - 285 4.6e-15 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 142 - 287 5.4e-09 G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd PF25047 144 - 332 4.8e-12 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 162 - 331 1.8e-21 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 163 - 288 6.3e-18 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 168 - 333 6e-13 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_Aladin PF25460 169 - 278 1.3e-07 Aladin seven-bladed propeller
WD40_Prp19 PF24814 171 - 288 2.3e-14 Prp19 WD40 domain
EIF3I PF24805 185 - 290 6.9e-08 EIF3I
WDR55 PF24796 205 - 332 2.8e-09 WDR55
Beta-prop_CAF1B_HIR1 PF24105 207 - 288 4.6e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 211 - 331 5.2e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_EIPR1 PF23609 212 - 284 1.8e-08 EIPR1 beta-propeller
Beta-prop_EIPR1 PF23609 238 - 328 6e-09 EIPR1 beta-propeller
Beta-prop_WDR3_1st PF25173 238 - 388 4.7e-15 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 255 - 331 7.2e-13 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05755
fragaria_vesca FvH4_1g13571 FvH4_2g06951 FvH4_2g09612 FvH4_3g24991 FvH4_3g39131 FvH4_4g01331 FvH4_5g11071 FvH4_5g22144 FvH4_5g22144 FvH4_5g27541 FvH4_5g38601 FvH4_6g09211 FvH4_6g17161 FvH4_6g30101 FvH4_6g30102 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g51131 FvH4_7g28851
malus_domestica MD02G1021900.v1.1 MD02G1050700.v1.1 MD02G1314000.v1.1 MD05G1244100.v1.1 MD07G1021300.v1.1 MD09G1113200.v1.1 MD09G1113300.v1.1 MD13G1019000.v1.1 MD17G1103400.v1.1
prunus_persica Prupe.1G484600_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.4G283800_v2.0.a1
pyrus_communis pycom01g13080 pycom03g05530 pycom05g09360 pycom05g20240 pycom06g06350 pycom06g14660 pycom09g03750 pycom13g22930 pycom14g00800 pycom15g35930 pycom17g09770 pycom17g25010
rosa_chinensis RchiOBHm_Chr1g0316991 RchiOBHm_Chr1g0321411 RchiOBHm_Chr1g0341061 RchiOBHm_Chr1g0352021 RchiOBHm_Chr1g0357231 RchiOBHm_Chr1g0361641 RchiOBHm_Chr1g0379151 RchiOBHm_Chr2g0084861 RchiOBHm_Chr2g0092021 RchiOBHm_Chr2g0102721 RchiOBHm_Chr2g0119161 RchiOBHm_Chr2g0120021 RchiOBHm_Chr2g0120031 RchiOBHm_Chr2g0120451 RchiOBHm_Chr2g0129631 RchiOBHm_Chr2g0133661 RchiOBHm_Chr2g0140031 RchiOBHm_Chr2g0154361 RchiOBHm_Chr2g0158311 RchiOBHm_Chr2g0160431 RchiOBHm_Chr2g0167951 RchiOBHm_Chr2g0168801 RchiOBHm_Chr3g0451531 RchiOBHm_Chr3g0453641 RchiOBHm_Chr3g0453831 RchiOBHm_Chr3g0455401 RchiOBHm_Chr3g0457461 RchiOBHm_Chr3g0459251 RchiOBHm_Chr3g0462451 RchiOBHm_Chr3g0465511 RchiOBHm_Chr3g0466111 RchiOBHm_Chr3g0469201 RchiOBHm_Chr3g0472791 RchiOBHm_Chr3g0472841 RchiOBHm_Chr4g0391691 RchiOBHm_Chr4g0393351 RchiOBHm_Chr4g0395061 RchiOBHm_Chr4g0395191 RchiOBHm_Chr4g0397541 RchiOBHm_Chr4g0402261 RchiOBHm_Chr4g0409421 RchiOBHm_Chr4g0417481 RchiOBHm_Chr4g0428291 RchiOBHm_Chr4g0434281 RchiOBHm_Chr4g0437231 RchiOBHm_Chr4g0439261 RchiOBHm_Chr5g0000531 RchiOBHm_Chr5g0016091 RchiOBHm_Chr5g0018801 RchiOBHm_Chr5g0026401 RchiOBHm_Chr5g0051821 RchiOBHm_Chr5g0062261 RchiOBHm_Chr5g0070711 RchiOBHm_Chr5g0074731 RchiOBHm_Chr5g0077831 RchiOBHm_Chr6g0251621 RchiOBHm_Chr6g0253181 RchiOBHm_Chr6g0258241 RchiOBHm_Chr6g0259301 RchiOBHm_Chr6g0263381 RchiOBHm_Chr6g0264461 RchiOBHm_Chr6g0278601 RchiOBHm_Chr6g0299951 RchiOBHm_Chr7g0184971 RchiOBHm_Chr7g0185631 RchiOBHm_Chr7g0200601 RchiOBHm_Chr7g0206171 RchiOBHm_Chr7g0222341 RchiOBHm_Chr7g0237631
rosa_laevigata RLG00000012173 RLG00000021075
rosa_multiflora Rmu_co8065174.1_g000001 Rmu_co8074360.1_g000001 Rmu_co8095164.1_g000001 Rmu_co8204978.1_g000001 Rmu_co8329721.1_g000001 Rmu_co8347171.1_g000001 Rmu_co8395661.1_g000001 Rmu_co8466967.1_g000001 Rmu_sc0000030.1_g000008 Rmu_sc0000290.1_g000015 Rmu_sc0000294.1_g000012 Rmu_sc0000319.1_g000020 Rmu_sc0000418.1_g000014 Rmu_sc0000423.1_g000010 Rmu_sc0000427.1_g000013 Rmu_sc0000430.1_g000011 Rmu_sc0000487.1_g000037 Rmu_sc0000765.1_g000028 Rmu_sc0000770.1_g000037 Rmu_sc0000785.1_g000011 Rmu_sc0000811.1_g000011 Rmu_sc0000848.1_g000004 Rmu_sc0000897.1_g000007 Rmu_sc0000955.1_g000014 Rmu_sc0001004.1_g000019 Rmu_sc0001010.1_g000068 Rmu_sc0001021.1_g000008 Rmu_sc0001084.1_g000013 Rmu_sc0001111.1_g000002 Rmu_sc0001190.1_g000015 Rmu_sc0001308.1_g000013 Rmu_sc0001398.1_g000010 Rmu_sc0001680.1_g000005 Rmu_sc0001926.1_g000017 Rmu_sc0001942.1_g000074 Rmu_sc0002068.1_g000010 Rmu_sc0002113.1_g000019 Rmu_sc0002299.1_g000032 Rmu_sc0002531.1_g000026 Rmu_sc0002549.1_g000005 Rmu_sc0002634.1_g000001 Rmu_sc0002640.1_g000014 Rmu_sc0002831.1_g000005 Rmu_sc0002848.1_g000018 Rmu_sc0003005.1_g000027 Rmu_sc0003076.1_g000012 Rmu_sc0003124.1_g000001 Rmu_sc0003143.1_g000004 Rmu_sc0003143.1_g000005 Rmu_sc0003143.1_g000006 Rmu_sc0003302.1_g000009 Rmu_sc0003368.1_g000035 Rmu_sc0003462.1_g000001 Rmu_sc0003692.1_g000016 Rmu_sc0003855.1_g000007 Rmu_sc0003858.1_g000008 Rmu_sc0004277.1_g000031 Rmu_sc0004732.1_g000013 Rmu_sc0004748.1_g000005 Rmu_sc0005091.1_g000024 Rmu_sc0005124.1_g000001 Rmu_sc0005167.1_g000001 Rmu_sc0005242.1_g000003 Rmu_sc0005486.1_g000005 Rmu_sc0005597.1_g000008 Rmu_sc0005653.1_g000004 Rmu_sc0006080.1_g000016 Rmu_sc0006371.1_g000003 Rmu_sc0006415.1_g000001 Rmu_sc0006522.1_g000003 Rmu_sc0006596.1_g000007 Rmu_sc0006991.1_g000005 Rmu_sc0007070.1_g000004 Rmu_sc0007737.1_g000005 Rmu_sc0007856.1_g000001 Rmu_sc0008241.1_g000001 Rmu_sc0008393.1_g000006 Rmu_sc0008563.1_g000008 Rmu_sc0008904.1_g000006 Rmu_sc0010313.1_g000014 Rmu_sc0010693.1_g000002 Rmu_sc0010917.1_g000011 Rmu_sc0011232.1_g000003 Rmu_sc0011978.1_g000005 Rmu_sc0012782.1_g000003 Rmu_sc0013716.1_g000002 Rmu_sc0015429.1_g000002 Rmu_sc0015649.1_g000014 Rmu_sc0021955.1_g000004 Rmu_sc0024117.1_g000001 Rmu_sc0024816.1_g000001 Rmu_sc0024816.1_g000006 Rmu_sc0026593.1_g000003 Rmu_sc0028245.1_g000001 Rmu_sc0029783.1_g000006 Rmu_sc0030817.1_g000001 Rmu_sc0031096.1_g000001 Rmu_sc0034014.1_g000001 Rmu_sc0036569.1_g000001 Rmu_sc0039034.1_g000001 Rmu_ssc0000004.1_g000015 Rmu_ssc0000053.1_g000002 Rmu_ssc0000126.1_g000069 Rmu_ssc0000211.1_g000020 Rmu_ssc0000295.1_g000005 Rmu_ssc0000359.1_g000057 Rmu_ssc0000385.1_g000011 Rmu_ssc0000416.1_g000004 Rmu_ssc0000434.1_g000018
rosa_roxburghii Rroxscaffold_159G00432920 Rroxscaffold_2G00091500 Rroxscaffold_2G00123510 Rroxscaffold_2G00124730 Rroxscaffold_2G00126030 Rroxscaffold_2G00138160 Rroxscaffold_2G00153260 Rroxscaffold_3G00224470 Rroxscaffold_3G00244670 Rroxscaffold_3G00261920 Rroxscaffold_3G00264150 Rroxscaffold_3G00270420 Rroxscaffold_4G00285150 Rroxscaffold_4G00299830 Rroxscaffold_4G00311290 Rroxscaffold_4G00323970 Rroxscaffold_5G00374550 Rroxscaffold_6G00427060 Rroxscaffold_7G00169160 Rroxscaffold_7G00174970
rosa_rugosa Rorug01G0012500 Rorug01G0046200 Rorug01G0118800 Rorug01G0120200 Rorug01G0135400.1 Rorug01G0174200 Rorug01G0204600 Rorug01G0253500 Rorug01G0290500 Rorug01G0290800 Rorug01G0312100 Rorug01G0333700 Rorug01G0339600 Rorug01G0377800 Rorug01G0400400 Rorug01G0402200 Rorug01G0410700 Rorug01G0431400 Rorug02G0011900 Rorug02G0012500 Rorug02G0022300 Rorug02G0062400 Rorug02G0085300 Rorug02G0091800 Rorug02G0104500 Rorug02G0125400 Rorug02G0131000 Rorug02G0147300 Rorug02G0171000 Rorug02G0181500 Rorug02G0196900 Rorug02G0207200 Rorug02G0226600 Rorug02G0241300 Rorug02G0274300 Rorug02G0280600 Rorug02G0280800 Rorug02G0304600 Rorug02G0304700 Rorug02G0338800 Rorug02G0375800 Rorug02G0379300 Rorug02G0379400 Rorug02G0447600 Rorug02G0459900 Rorug02G0467200 Rorug02G0535400 Rorug03G0072300 Rorug03G0218900 Rorug03G0223700 Rorug03G0231500 Rorug03G0257200 Rorug03G0257300 Rorug03G0257400 Rorug03G0265700 Rorug03G0290200 Rorug03G0291300 Rorug03G0311000 Rorug03G0326900 Rorug03G0332700 Rorug03G0352000 Rorug03G0369700.1 Rorug04G0014000 Rorug04G0014500 Rorug04G0124100 Rorug04G0142100 Rorug04G0151400 Rorug04G0160700 Rorug04G0186400 Rorug04G0227600 Rorug04G0253800 Rorug04G0274400 Rorug04G0274600 Rorug04G0295600 Rorug04G0302000 Rorug04G0320600 Rorug04G0331300 Rorug04G0352200 Rorug04G0407000 Rorug04G0430300 Rorug04G0443000 Rorug04G0446400 Rorug04G0459000 Rorug05G0042400 Rorug05G0042500 Rorug05G0064900 Rorug05G0074300 Rorug05G0097700 Rorug05G0102300 Rorug05G0102300 Rorug05G0123700 Rorug05G0145800 Rorug05G0152900 Rorug05G0175900 Rorug05G0182100 Rorug05G0196000 Rorug05G0207000 Rorug05G0212800 Rorug05G0226400 Rorug05G0241500 Rorug05G0264800.1 Rorug05G0269600 Rorug05G0298200 Rorug05G0304300 Rorug05G0344300 Rorug05G0382300 Rorug05G0392300.1 Rorug05G0427900 Rorug05G0433500 Rorug05G0452700 Rorug05G0464600 Rorug05G0475800 Rorug05G0488600 Rorug05G0493000 Rorug05G0504800 Rorug05G0505500.1 Rorug05G0508400 Rorug05G0545800 Rorug05G0587000 Rorug05G0591100.1 Rorug06G0013200 Rorug06G0037700 Rorug06G0098200 Rorug06G0184500 Rorug06G0185300 Rorug06G0188200 Rorug06G0208300 Rorug06G0212900 Rorug06G0251500 Rorug06G0328000 Rorug06G0366100 Rorug06G0367400 Rorug06G0371200 Rorug06G0393500 Rorug06G0423000 Rorug06G0440500 Rorug06G0445400 Rorug06G0451700 Rorug06G0479400 Rorug06G0479500 Rorug06G0479600 Rorug06G0479700 Rorug06G0479800 Rorug06G0483100 Rorug07G0001200 Rorug07G0005200 Rorug07G0068600 Rorug07G0109300 Rorug07G0115500 Rorug07G0117000 Rorug07G0123500 Rorug07G0128000 Rorug07G0128100 Rorug07G0225500 Rorug07G0280200 Rorug07G0317300
rosa_samantha Rh1AG251400 Rh1BG133300 Rh1CG079900 Rh1CG235600 Rh1DG168000 Rh2AG533100 Rh2BG546900 Rh2CG517000 Rh2DG237900 Rh2DG555900 Rh3CG293400 Rh4AG419800 Rh4BG306300 Rh4CG446100 Rh5AG268900 Rh5AG282600 Rh5BG006600 Rh5BG345700 Rh5CG468100 Rh6CG190700 Rh6DG111900 Rh7BG172200 Rh7BG412200
rosa_wichuraiana Rw0G003620 Rw0G004000 Rw0G011770 Rw0G019070 Rw0G020070 Rw1G002990 Rw1G003550 Rw1G003860 Rw1G005930 Rw1G018430 Rw1G021160 Rw1G023820 Rw1G032700 Rw1G035790 Rw1G036160 Rw1G038660 Rw1G039380 Rw2G016120 Rw2G018680 Rw2G026860 Rw2G028670 Rw2G040870 Rw2G041040 Rw2G041410 Rw2G044140 Rw2G047570 Rw3G019760 Rw4G031020 Rw5G003700 Rw5G004830 Rw5G037470 Rw5G047400 Rw6G020150 Rw6G024010 Rw6G026600 Rw7G002480 Rw7G004430 Rw7G011870 Rw7G035520 Rw7G041260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
Acc65I GGTACC 1 cut(s) 871
AccB1I GGYRCC 1 cut(s) 871
AccII CGCG 1 cut(s) 176
AciI CCGC 5 cut(s) 176, 255, 399, 859, 1062
AclI AACGTT 1 cut(s) 270
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 4 cut(s) 3, 30, 113, 892
AcsI RAATTY 1 cut(s) 564
AcuI CTGAAG 2 cut(s) 461, 813
AcyI GRCGYC 2 cut(s) 243, 276
AfaI GTAC 3 cut(s) 50, 427, 873
AfiI CCNNNNNNNGG 3 cut(s) 132, 435, 901
AgsI TTSAA 3 cut(s) 552, 920, 1122
AjnI CCWGG 1 cut(s) 1146
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 3 cut(s) 187, 865, 1205
AluI AGCT 3 cut(s) 187, 865, 1205
Alw26I GTCTC 2 cut(s) 174, 450
AlwI GGATC 1 cut(s) 458
AlwNI CAGNNNCTG 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 6 cut(s) 3, 30, 113, 144, 892, 1034
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 564
Asp718I GGTACC 1 cut(s) 871
AspS9I GGNCC 7 cut(s) 136, 145, 178, 198, 925, 985, 1034
AsuHPI GGTGA 4 cut(s) 115, 974, 1037, 1190
AsuII TTCGAA 1 cut(s) 668
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 5 cut(s) 136, 178, 198, 925, 985
AxyI CCTNAGG 1 cut(s) 303
BalI TGGCCA 2 cut(s) 115, 894
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 1 cut(s) 294
BbsI GAAGAC 2 cut(s) 30, 1140
BbvI GCAGC 1 cut(s) 351
BccI CCATC 8 cut(s) 124, 329, 446, 801, 1016, 1025, 1160, 1181
BceAI ACGGC 4 cut(s) 17, 38, 45, 263
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 1148
BcoDI GTCTC 2 cut(s) 174, 450
BfmI CTRYAG 2 cut(s) 365, 819
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 1148
Bme18I GGWCC 5 cut(s) 136, 178, 198, 925, 985
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 7 cut(s) 136, 145, 178, 198, 925, 985, 1034
BmiI GGNNCC 9 cut(s) 137, 138, 147, 199, 200, 873, 926, 927, 986
BmrFI CCNGG 1 cut(s) 1148
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 266, 833, 959
BmuI ACTGGG 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 705
BpiI GAAGAC 2 cut(s) 30, 1140
BpmI CTGGAG 1 cut(s) 1130
Bpu14I TTCGAA 1 cut(s) 668
BpuEI CTTGAG 2 cut(s) 579, 748
BsaHI GRCGYC 2 cut(s) 243, 276
BsaJI CCNNGG 3 cut(s) 141, 193, 1109
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 435, 901
Bse1I ACTGG 1 cut(s) 137
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 875
BseBI CCWGG 1 cut(s) 1148
BseDI CCNNGG 3 cut(s) 141, 193, 1109
BseGI GGATG 6 cut(s) 189, 457, 583, 610, 793, 1009
BseLI CCNNNNNNNGG 3 cut(s) 132, 435, 901
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 2 cut(s) 461, 878
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 239, 917
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 6 cut(s) 5, 32, 115, 146, 894, 1036
BshNI GGYRCC 1 cut(s) 871
BsiEI CGRYCG 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 194
BslFI GGGAC 7 cut(s) 122, 211, 504, 713, 737, 938, 998
BslI CCNNNNNNNGG 3 cut(s) 132, 435, 901
BsmAI GTCTC 2 cut(s) 174, 450
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 7 cut(s) 122, 211, 504, 713, 737, 938, 998
BsmI GAATGC 1 cut(s) 664
BsnI GGCC 6 cut(s) 5, 32, 115, 146, 894, 1036
BsoBI CYCGRG 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 668
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 10, 463
Bsp19I CCATGG 1 cut(s) 1109
BspACI CCGC 5 cut(s) 176, 255, 399, 859, 1062
BspANI GGCC 6 cut(s) 5, 32, 115, 146, 894, 1036
BspCNI CTCAG 2 cut(s) 460, 879
BspFNI CGCG 1 cut(s) 176
BspHI TCATGA 4 cut(s) 487, 634, 763, 934
BspLI GGNNCC 9 cut(s) 137, 138, 147, 199, 200, 873, 926, 927, 986
BspMAI CTGCAG 1 cut(s) 369
BspPI GGATC 1 cut(s) 458
BspT104I TTCGAA 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 871
BsrDI GCAATG 1 cut(s) 875
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 141, 193, 1109
BssMI GATC 2 cut(s) 10, 463
BssNI GRCGYC 2 cut(s) 243, 276
BssT1I CCWWGG 1 cut(s) 1109
Bst2UI CCWGG 1 cut(s) 1148
Bst4CI ACNGT 5 cut(s) 127, 841, 871, 943, 1178
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 2 cut(s) 243, 276
BstAPI GCANNNNNTGC 1 cut(s) 956
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 3 cut(s) 303, 447, 887
BstDSI CCRYGG 1 cut(s) 1109
BstEII GGTNACC 2 cut(s) 533, 962
BstF5I GGATG 6 cut(s) 189, 457, 583, 610, 793, 1009
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 2 cut(s) 13, 466
BstMAI GTCTC 2 cut(s) 174, 450
BstMBI GATC 2 cut(s) 10, 463
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 370, 956
BstNI CCWGG 1 cut(s) 1148
BstNSI RCATGY 2 cut(s) 623, 884
BstPAI GACNNNNGTC 1 cut(s) 705
BstPI GGTNACC 2 cut(s) 533, 962
BstSCI CCNGG 1 cut(s) 1146
BstSFI CTRYAG 2 cut(s) 365, 819
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 351
BstV2I GAAGAC 2 cut(s) 30, 1140
BstZI CGGCCG 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 6 cut(s) 5, 32, 115, 146, 894, 1036
BtgI CCRYGG 1 cut(s) 1109
BtsCI GGATG 6 cut(s) 189, 457, 583, 610, 793, 1009
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 882
CaiI CAGNNNCTG 1 cut(s) 439
CciI TCATGA 4 cut(s) 487, 634, 763, 934
Cfr13I GGNCC 7 cut(s) 136, 145, 178, 198, 925, 985, 1034
CseI GACGC 3 cut(s) 251, 284, 620
Csp6I GTAC 3 cut(s) 49, 426, 872
CviQI GTAC 3 cut(s) 49, 426, 872
DdeI CTNAG 3 cut(s) 303, 447, 887
DpnI GATC 2 cut(s) 12, 465
DpnII GATC 2 cut(s) 10, 463
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 4 cut(s) 3, 30, 113, 892
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 1109
Eco24I GRGCYC 1 cut(s) 294
Eco32I GATATC 1 cut(s) 1080
Eco47I GGWCC 5 cut(s) 136, 178, 198, 925, 985
Eco52I CGGCCG 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 461, 813
Eco81I CCTNAGG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 194
Eco91I GGTNACC 2 cut(s) 533, 962
EcoO109I RGGNCCY 4 cut(s) 136, 198, 925, 985
EcoO65I GGTNACC 2 cut(s) 533, 962
EcoRII CCWGG 1 cut(s) 1146
EcoRV GATATC 1 cut(s) 1080
EcoT14I CCWWGG 1 cut(s) 1109
EcoT22I ATGCAT 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 1109
Esp3I CGTCTC 1 cut(s) 174
FaqI GGGAC 7 cut(s) 122, 211, 504, 713, 737, 938, 998
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 6 cut(s) 176, 464, 590, 597, 780, 1016
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 1130
HaeIII GGCC 6 cut(s) 5, 32, 115, 146, 894, 1036
HgaI GACGC 3 cut(s) 251, 284, 620
Hin1I GRCGYC 2 cut(s) 243, 276
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 1203
HinfI GANTC 4 cut(s) 325, 517, 679, 749
HphI GGTGA 4 cut(s) 115, 974, 1037, 1190
Hpy166II GTNNAC 4 cut(s) 130, 181, 274, 778
Hpy188I TCNGA 8 cut(s) 163, 211, 286, 832, 888, 1084, 1210, 1217
Hpy8I GTNNAC 4 cut(s) 130, 181, 274, 778
Hpy99I CGWCG 5 cut(s) 11, 38, 215, 245, 290
HpyAV CCTTC 3 cut(s) 491, 963, 1190
HpyCH4III ACNGT 5 cut(s) 127, 841, 871, 943, 1178
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 367, 619, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 370, 956
HpyF3I CTNAG 3 cut(s) 303, 447, 887
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 243, 276
KflI GGGWCCC 3 cut(s) 136, 198, 925
KpnI GGTACC 1 cut(s) 875
Kzo9I GATC 2 cut(s) 10, 463
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 3 cut(s) 266, 833, 959
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 533, 962, 1178
MalI GATC 2 cut(s) 12, 465
MboI GATC 2 cut(s) 10, 463
MboII GAAGA 8 cut(s) 35, 56, 73, 76, 334, 682, 819, 1145
MfeI CAATTG 1 cut(s) 710
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 2 cut(s) 115, 894
MluCI AATT 2 cut(s) 564, 710
MluNI TGGCCA 2 cut(s) 115, 894
MlyI GAGTC 2 cut(s) 526, 743
MmeI TCCRAC 4 cut(s) 186, 234, 309, 993
Mox20I TGGCCA 2 cut(s) 115, 894
Mph1103I ATGCAT 1 cut(s) 621
MscI TGGCCA 2 cut(s) 115, 894
MseI TTAA 3 cut(s) 525, 648, 990
MslI CAYNNNNRTG 2 cut(s) 639, 839
Msp20I TGGCCA 2 cut(s) 115, 894
MspA1I CMGCKG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 1148
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 664
MvaI CCWGG 1 cut(s) 1148
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 370, 956
NcoI CCATGG 1 cut(s) 1109
NdeII GATC 2 cut(s) 10, 463
NlaIV GGNNCC 9 cut(s) 137, 138, 147, 199, 200, 873, 926, 927, 986
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 2 cut(s) 962, 1178
NsiI ATGCAT 1 cut(s) 621
NspI RCATGY 2 cut(s) 623, 884
NspV TTCGAA 1 cut(s) 668
OliI CACNNNNGTG 1 cut(s) 839
PaeI GCATGC 1 cut(s) 884
PagI TCATGA 4 cut(s) 487, 634, 763, 934
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 282
PctI GAATGC 1 cut(s) 664
PfeI GAWTC 2 cut(s) 325, 679
PflFI GACNNNGTC 1 cut(s) 752
PkrI GCNGC 1 cut(s) 366
PleI GAGTC 2 cut(s) 525, 743
PpsI GAGTC 2 cut(s) 525, 743
PpuMI RGGWCCY 4 cut(s) 136, 198, 925, 985
PshAI GACNNNNGTC 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 270
Psp5II RGGWCCY 4 cut(s) 136, 198, 925, 985
Psp6I CCWGG 1 cut(s) 1146
PspEI GGTNACC 2 cut(s) 533, 962
PspGI CCWGG 1 cut(s) 1146
PspN4I GGNNCC 9 cut(s) 137, 138, 147, 199, 200, 873, 926, 927, 986
PspPI GGNCC 7 cut(s) 136, 145, 178, 198, 925, 985, 1034
PspPPI RGGWCCY 4 cut(s) 136, 198, 925, 985
PstI CTGCAG 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 439
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 3 cut(s) 50, 427, 873
RsaNI GTAC 3 cut(s) 49, 426, 872
RseI CAYNNNNRTG 2 cut(s) 639, 839
SaqAI TTAA 3 cut(s) 525, 648, 990
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 2 cut(s) 10, 463
Sau96I GGNCC 7 cut(s) 136, 145, 178, 198, 925, 985, 1034
SchI GAGTC 2 cut(s) 526, 743
ScrFI CCNGG 1 cut(s) 1148
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 3 cut(s) 266, 833, 959
SfcI CTRYAG 2 cut(s) 365, 819
SfuI TTCGAA 1 cut(s) 668
SinI GGWCC 5 cut(s) 136, 178, 198, 925, 985
SmiMI CAYNNNNRTG 2 cut(s) 639, 839
SmlI CTYRAG 2 cut(s) 594, 727
SmoI CTYRAG 2 cut(s) 594, 727
SphI GCATGC 1 cut(s) 884
Sse9I AATT 2 cut(s) 564, 710
SsiI CCGC 5 cut(s) 176, 255, 399, 859, 1062
StyD4I CCNGG 1 cut(s) 1146
StyI CCWWGG 1 cut(s) 1109
TaaI ACNGT 5 cut(s) 127, 841, 871, 943, 1178
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 108, 333, 668
TaqII GACCGA 1 cut(s) 981
TasI AATT 2 cut(s) 564, 710
TfiI GAWTC 2 cut(s) 325, 679
Tru1I TTAA 3 cut(s) 525, 648, 990
Tru9I TTAA 3 cut(s) 525, 648, 990
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 2 cut(s) 962, 1178
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 2 cut(s) 962, 1178
TspDTI ATGAA 3 cut(s) 599, 651, 752
TspGWI ACGGA 2 cut(s) 63, 786
TspRI CASTG 1 cut(s) 137
Tth111I GACNNNGTC 1 cut(s) 752
VpaK11BI GGWCC 5 cut(s) 136, 178, 198, 925, 985
XapI RAATTY 1 cut(s) 564
XceI RCATGY 2 cut(s) 623, 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.