Reverse transcriptase (RNA-dependent DNA polymerase)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 473, 3016 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2421 |
| AccI | GTMKAC | 1 cut(s) | 2434 |
| AccII | CGCG | 2 cut(s) | 1804, 2038 |
| AccIII | TCCGGA | 1 cut(s) | 85 |
| AciI | CCGC | 7 cut(s) | 148, 1706, 1802, 2036, 2074, 2117, 2912 |
| AclWI | GGATC | 3 cut(s) | 579, 1697, 2774 |
| AcoI | YGGCCR | 1 cut(s) | 1464 |
| AfaI | GTAC | 5 cut(s) | 175, 589, 1006, 1830, 2016 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 116, 340, 1294, 2253, 2421, 2634, 2759 |
| AflII | CTTAAG | 3 cut(s) | 1571, 2321, 2629 |
| AflIII | ACRYGT | 1 cut(s) | 1825 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2220 |
| AhlI | ACTAGT | 1 cut(s) | 1384 |
| AjnI | CCWGG | 4 cut(s) | 2414, 2529, 2610, 2808 |
| AleI | CACNNNNGTG | 1 cut(s) | 488 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1674, 1706 |
| Alw21I | GWGCWC | 4 cut(s) | 376, 892, 1147, 1249 |
| Alw26I | GTCTC | 5 cut(s) | 509, 668, 1354, 2207, 2829 |
| Alw44I | GTGCAC | 1 cut(s) | 1245 |
| AlwI | GGATC | 3 cut(s) | 579, 1697, 2774 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 803 |
| Ama87I | CYCGRG | 1 cut(s) | 1038 |
| Aor13HI | TCCGGA | 1 cut(s) | 85 |
| AoxI | GGCC | 7 cut(s) | 331, 429, 1464, 2186, 2537, 2608, 2718 |
| ApaI | GGGCCC | 1 cut(s) | 2722 |
| ApaLI | GTGCAC | 1 cut(s) | 1245 |
| ApeKI | GCWGC | 6 cut(s) | 523, 761, 2624, 2649, 2897, 3113 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 99, 131 |
| AseI | ATTAAT | 3 cut(s) | 1127, 2132, 2547 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 423, 1740 |
| AspLEI | GCGC | 1 cut(s) | 2699 |
| AspS9I | GGNCC | 9 cut(s) | 332, 1132, 1151, 1297, 2187, 2458, 2718, 2719, 3205 |
| AsuHPI | GGTGA | 5 cut(s) | 317, 338, 362, 944, 1877 |
| AvaI | CYCGRG | 1 cut(s) | 1038 |
| AvaII | GGWCC | 5 cut(s) | 1132, 1151, 1297, 2458, 3205 |
| BaeGI | GKGCMC | 4 cut(s) | 478, 655, 1249, 2722 |
| BalI | TGGCCA | 1 cut(s) | 1466 |
| BanI | GGYRCC | 2 cut(s) | 473, 3016 |
| BanII | GRGCYC | 2 cut(s) | 376, 2722 |
| BbsI | GAAGAC | 3 cut(s) | 900, 2634, 3209 |
| Bbv12I | GWGCWC | 4 cut(s) | 376, 892, 1147, 1249 |
| BbvI | GCAGC | 6 cut(s) | 510, 773, 2636, 2636, 2884, 3100 |
| BccI | CCATC | 9 cut(s) | 142, 154, 323, 923, 1151, 2203, 2489, 2777, 3143 |
| BciT130I | CCWGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| BclI | TGATCA | 4 cut(s) | 439, 610, 1275, 1887 |
| BcoDI | GTCTC | 5 cut(s) | 509, 668, 1354, 2207, 2829 |
| BcuI | ACTAGT | 1 cut(s) | 1384 |
| BfmI | CTRYAG | 2 cut(s) | 1662, 2898 |
| BfoI | RGCGCY | 1 cut(s) | 2700 |
| BfrI | CTTAAG | 3 cut(s) | 1571, 2321, 2629 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3025 |
| BglII | AGATCT | 2 cut(s) | 864, 2054 |
| BisI | GCNGC | 6 cut(s) | 524, 762, 2625, 2650, 2898, 3114 |
| BlpI | GCTNAGC | 1 cut(s) | 1729 |
| BlsI | GCNGC | 6 cut(s) | 525, 763, 2626, 2651, 2899, 3115 |
| Bme1390I | CCNGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| Bme18I | GGWCC | 5 cut(s) | 1132, 1151, 1297, 2458, 3205 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2220 |
| BmeT110I | CYCGRG | 1 cut(s) | 1038 |
| BmgT120I | GGNCC | 9 cut(s) | 332, 1132, 1151, 1297, 2187, 2458, 2718, 2719, 3205 |
| BmiI | GGNNCC | 9 cut(s) | 475, 1134, 2101, 2245, 2459, 2720, 2721, 3018, 3206 |
| BmrFI | CCNGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| BmsI | GCATC | 5 cut(s) | 39, 43, 553, 3064, 3109 |
| BpiI | GAAGAC | 3 cut(s) | 900, 2634, 3209 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2363, 2395 |
| BpmI | CTGGAG | 2 cut(s) | 473, 2398 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1336 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1729 |
| BpuEI | CTTGAG | 1 cut(s) | 1968 |
| BsaBI | GATNNNNATC | 1 cut(s) | 615 |
| BsaI | GGTCTC | 1 cut(s) | 509 |
| BsaJI | CCNNGG | 9 cut(s) | 335, 554, 1053, 1696, 2026, 2112, 2530, 2611, 3020 |
| BsaWI | WCCGGW | 2 cut(s) | 85, 1025 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 116, 340, 1294, 2253, 2421, 2634, 2759 |
| Bse1I | ACTGG | 3 cut(s) | 126, 1140, 2747 |
| Bse3DI | GCAATG | 1 cut(s) | 520 |
| Bse8I | GATNNNNATC | 1 cut(s) | 615 |
| BseAI | TCCGGA | 1 cut(s) | 85 |
| BseBI | CCWGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| BseDI | CCNNGG | 9 cut(s) | 335, 554, 1053, 1696, 2026, 2112, 2530, 2611, 3020 |
| BseGI | GGATG | 4 cut(s) | 550, 568, 1284, 2214 |
| BseJI | GATNNNNATC | 1 cut(s) | 615 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 116, 340, 1294, 2253, 2421, 2634, 2759 |
| BseMI | GCAATG | 1 cut(s) | 520 |
| BseMII | CTCAG | 1 cut(s) | 520 |
| BseNI | ACTGG | 3 cut(s) | 126, 1140, 2747 |
| BseRI | GAGGAG | 3 cut(s) | 1115, 1919, 2583 |
| BseSI | GKGCMC | 4 cut(s) | 478, 655, 1249, 2722 |
| BseXI | GCAGC | 6 cut(s) | 510, 773, 2636, 2636, 2884, 3100 |
| BseYI | CCCAGC | 3 cut(s) | 1188, 1605, 1972 |
| BsgI | GTGCAG | 3 cut(s) | 414, 2687, 3056 |
| Bsh1236I | CGCG | 2 cut(s) | 1804, 2038 |
| BshFI | GGCC | 7 cut(s) | 333, 431, 1466, 2188, 2539, 2610, 2720 |
| BshNI | GGYRCC | 2 cut(s) | 473, 3016 |
| BsiHKAI | GWGCWC | 4 cut(s) | 376, 892, 1147, 1249 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1038 |
| BsiSI | CCGG | 3 cut(s) | 86, 1026, 1218 |
| BsiWI | CGTACG | 1 cut(s) | 1004 |
| BslFI | GGGAC | 4 cut(s) | 1205, 2002, 2471, 3218 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 116, 340, 1294, 2253, 2421, 2634, 2759 |
| BsmAI | GTCTC | 5 cut(s) | 509, 668, 1354, 2207, 2829 |
| BsmFI | GGGAC | 4 cut(s) | 1205, 2002, 2471, 3218 |
| BsmI | GAATGC | 2 cut(s) | 1481, 2268 |
| BsnI | GGCC | 7 cut(s) | 333, 431, 1466, 2188, 2539, 2610, 2720 |
| Bso31I | GGTCTC | 1 cut(s) | 509 |
| BsoBI | CYCGRG | 1 cut(s) | 1038 |
| Bsp120I | GGGCCC | 1 cut(s) | 2718 |
| Bsp1286I | GDGCHC | 7 cut(s) | 376, 478, 655, 892, 1147, 1249, 2722 |
| Bsp13I | TCCGGA | 1 cut(s) | 85 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1729 |
| Bsp19I | CCATGG | 1 cut(s) | 2112 |
| BspACI | CCGC | 7 cut(s) | 148, 1706, 1802, 2036, 2074, 2117, 2912 |
| BspANI | GGCC | 7 cut(s) | 333, 431, 1466, 2188, 2539, 2610, 2720 |
| BspCNI | CTCAG | 1 cut(s) | 519 |
| BspEI | TCCGGA | 1 cut(s) | 85 |
| BspFNI | CGCG | 2 cut(s) | 1804, 2038 |
| BspLI | GGNNCC | 9 cut(s) | 475, 1134, 2101, 2245, 2459, 2720, 2721, 3018, 3206 |
| BspMAI | CTGCAG | 1 cut(s) | 2902 |
| BspPI | GGATC | 3 cut(s) | 579, 1697, 2774 |
| BspQI | GCTCTTC | 2 cut(s) | 696, 771 |
| BspT107I | GGYRCC | 2 cut(s) | 473, 3016 |
| BspTI | CTTAAG | 3 cut(s) | 1571, 2321, 2629 |
| BspTNI | GGTCTC | 1 cut(s) | 509 |
| BsrDI | GCAATG | 1 cut(s) | 520 |
| BsrI | ACTGG | 3 cut(s) | 126, 1140, 2747 |
| BssECI | CCNNGG | 9 cut(s) | 335, 554, 1053, 1696, 2026, 2112, 2530, 2611, 3020 |
| BssT1I | CCWWGG | 6 cut(s) | 335, 554, 1053, 1696, 2112, 3020 |
| Bst2UI | CCWGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| Bst4CI | ACNGT | 4 cut(s) | 283, 882, 1325, 2168 |
| Bst6I | CTCTTC | 3 cut(s) | 696, 771, 2872 |
| BstAFI | CTTAAG | 3 cut(s) | 1571, 2321, 2629 |
| BstC8I | GCNNGC | 7 cut(s) | 655, 831, 1614, 1957, 2040, 2815, 3053 |
| BstDEI | CTNAG | 6 cut(s) | 506, 757, 1336, 1729, 1745, 1944 |
| BstDSI | CCRYGG | 1 cut(s) | 2112 |
| BstEII | GGTNACC | 1 cut(s) | 932 |
| BstF5I | GGATG | 4 cut(s) | 550, 568, 1284, 2214 |
| BstFNI | CGCG | 2 cut(s) | 1804, 2038 |
| BstH2I | RGCGCY | 1 cut(s) | 2700 |
| BstHHI | GCGC | 1 cut(s) | 2699 |
| BstMAI | GTCTC | 5 cut(s) | 509, 668, 1354, 2207, 2829 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 749, 758, 1567, 2703, 3025, 3034, 3119 |
| BstNI | CCWGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| BstNSI | RCATGY | 4 cut(s) | 1489, 1829, 1959, 2656 |
| BstPI | GGTNACC | 1 cut(s) | 932 |
| BstSCI | CCNGG | 4 cut(s) | 2414, 2529, 2610, 2808 |
| BstSFI | CTRYAG | 2 cut(s) | 1662, 2898 |
| BstSLI | GKGCMC | 4 cut(s) | 478, 655, 1249, 2722 |
| BstUI | CGCG | 2 cut(s) | 1804, 2038 |
| BstV1I | GCAGC | 6 cut(s) | 510, 773, 2636, 2636, 2884, 3100 |
| BstV2I | GAAGAC | 3 cut(s) | 900, 2634, 3209 |
| BstX2I | RGATCY | 3 cut(s) | 864, 1702, 2054 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 207, 1424 |
| BstYI | RGATCY | 3 cut(s) | 864, 1702, 2054 |
| BsuRI | GGCC | 7 cut(s) | 333, 431, 1466, 2188, 2539, 2610, 2720 |
| BtgI | CCRYGG | 1 cut(s) | 2112 |
| BtsCI | GGATG | 4 cut(s) | 550, 568, 1284, 2214 |
| BtsI | GCAGTG | 1 cut(s) | 3044 |
| BtsIMutI | CAGTG | 4 cut(s) | 449, 1147, 1758, 3044 |
| Cac8I | GCNNGC | 7 cut(s) | 655, 831, 1614, 1957, 2040, 2815, 3053 |
| CaiI | CAGNNNCTG | 1 cut(s) | 803 |
| CfoI | GCGC | 1 cut(s) | 2699 |
| Cfr13I | GGNCC | 9 cut(s) | 332, 1132, 1151, 1297, 2187, 2458, 2718, 2719, 3205 |
| Csp6I | GTAC | 5 cut(s) | 174, 588, 1005, 1829, 2015 |
| CviQI | GTAC | 5 cut(s) | 174, 588, 1005, 1829, 2015 |
| DdeI | CTNAG | 6 cut(s) | 506, 757, 1336, 1729, 1745, 1944 |
| DraI | TTTAAA | 1 cut(s) | 2587 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2220 |
| EaeI | YGGCCR | 1 cut(s) | 1464 |
| Eam1104I | CTCTTC | 3 cut(s) | 696, 771, 2872 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2220 |
| EarI | CTCTTC | 3 cut(s) | 696, 771, 2872 |
| Ecl136II | GAGCTC | 1 cut(s) | 374 |
| Eco130I | CCWWGG | 6 cut(s) | 335, 554, 1053, 1696, 2112, 3020 |
| Eco24I | GRGCYC | 2 cut(s) | 376, 2722 |
| Eco31I | GGTCTC | 1 cut(s) | 509 |
| Eco32I | GATATC | 1 cut(s) | 2881 |
| Eco47I | GGWCC | 5 cut(s) | 1132, 1151, 1297, 2458, 3205 |
| Eco53kI | GAGCTC | 1 cut(s) | 374 |
| Eco88I | CYCGRG | 1 cut(s) | 1038 |
| Eco91I | GGTNACC | 1 cut(s) | 932 |
| EcoICRI | GAGCTC | 1 cut(s) | 374 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2458, 2719 |
| EcoO65I | GGTNACC | 1 cut(s) | 932 |
| EcoRI | GAATTC | 2 cut(s) | 855, 1918 |
| EcoRII | CCWGG | 4 cut(s) | 2414, 2529, 2610, 2808 |
| EcoRV | GATATC | 1 cut(s) | 2881 |
| EcoT14I | CCWWGG | 6 cut(s) | 335, 554, 1053, 1696, 2112, 3020 |
| EcoT22I | ATGCAT | 3 cut(s) | 58, 101, 3075 |
| EcoT38I | GRGCYC | 2 cut(s) | 376, 2722 |
| ErhI | CCWWGG | 6 cut(s) | 335, 554, 1053, 1696, 2112, 3020 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1605, 1637, 1728, 1760 |
| FaqI | GGGAC | 4 cut(s) | 1205, 2002, 2471, 3218 |
| FauI | CCCGC | 1 cut(s) | 2110 |
| FbaI | TGATCA | 4 cut(s) | 439, 610, 1275, 1887 |
| FblI | GTMKAC | 1 cut(s) | 2434 |
| Fnu4HI | GCNGC | 6 cut(s) | 524, 762, 2625, 2650, 2898, 3114 |
| FokI | GGATG | 4 cut(s) | 537, 575, 1271, 2221 |
| FriOI | GRGCYC | 2 cut(s) | 376, 2722 |
| Fsp4HI | GCNGC | 6 cut(s) | 524, 762, 2625, 2650, 2898, 3114 |
| GlaI | GCGC | 1 cut(s) | 2698 |
| GluI | GCNGC | 6 cut(s) | 524, 762, 2625, 2650, 2898, 3114 |
| GsaI | CCCAGC | 3 cut(s) | 1192, 1609, 1976 |
| GsuI | CTGGAG | 2 cut(s) | 473, 2398 |
| HaeII | RGCGCY | 1 cut(s) | 2700 |
| HaeIII | GGCC | 7 cut(s) | 333, 431, 1466, 2188, 2539, 2610, 2720 |
| HapII | CCGG | 3 cut(s) | 86, 1026, 1218 |
| HhaI | GCGC | 1 cut(s) | 2699 |
| Hin6I | GCGC | 1 cut(s) | 2697 |
| HinP1I | GCGC | 1 cut(s) | 2697 |
| HincII | GTYRAC | 3 cut(s) | 1519, 2435, 2748 |
| HindII | GTYRAC | 3 cut(s) | 1519, 2435, 2748 |
| HpaI | GTTAAC | 1 cut(s) | 2748 |
| HpaII | CCGG | 3 cut(s) | 86, 1026, 1218 |
| HphI | GGTGA | 5 cut(s) | 317, 338, 362, 944, 1877 |
| Hpy99I | CGWCG | 1 cut(s) | 2718 |
| HpyAV | CCTTC | 7 cut(s) | 182, 379, 1146, 1770, 2275, 2300, 3095 |
| HpyCH4III | ACNGT | 4 cut(s) | 283, 882, 1325, 2168 |
| HpyCH4IV | ACGT | 2 cut(s) | 905, 2559 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 749, 758, 1567, 2703, 3025, 3034, 3119 |
| HpyF3I | CTNAG | 6 cut(s) | 506, 757, 1336, 1729, 1745, 1944 |
| HpySE526I | ACGT | 2 cut(s) | 905, 2559 |
| HspAI | GCGC | 1 cut(s) | 2697 |
| Kpn2I | TCCGGA | 1 cut(s) | 85 |
| Ksp22I | TGATCA | 4 cut(s) | 439, 610, 1275, 1887 |
| KspAI | GTTAAC | 1 cut(s) | 2748 |
| LguI | GCTCTTC | 2 cut(s) | 696, 771 |
| LmnI | GCTCC | 7 cut(s) | 371, 454, 520, 1822, 2417, 2671, 3042 |
| Lsp1109I | GCAGC | 6 cut(s) | 510, 773, 2636, 2636, 2884, 3100 |
| LweI | GCATC | 5 cut(s) | 39, 43, 553, 3064, 3109 |
| MaeII | ACGT | 2 cut(s) | 905, 2559 |
| MaeIII | GTNAC | 6 cut(s) | 35, 350, 932, 980, 1667, 2499 |
| MfeI | CAATTG | 2 cut(s) | 1329, 3046 |
| MflI | RGATCY | 3 cut(s) | 864, 1702, 2054 |
| MhlI | GDGCHC | 7 cut(s) | 376, 478, 655, 892, 1147, 1249, 2722 |
| MlsI | TGGCCA | 1 cut(s) | 1466 |
| MluNI | TGGCCA | 1 cut(s) | 1466 |
| MlyI | GAGTC | 4 cut(s) | 854, 1050, 2795, 3199 |
| MmeI | TCCRAC | 6 cut(s) | 97, 249, 540, 2072, 2744, 2829 |
| Mox20I | TGGCCA | 1 cut(s) | 1466 |
| Mph1103I | ATGCAT | 3 cut(s) | 58, 101, 3075 |
| MroI | TCCGGA | 1 cut(s) | 85 |
| MroXI | GAANNNNTTC | 2 cut(s) | 423, 1740 |
| MscI | TGGCCA | 1 cut(s) | 1466 |
| MslI | CAYNNNNRTG | 1 cut(s) | 488 |
| Msp20I | TGGCCA | 1 cut(s) | 1466 |
| MspCI | CTTAAG | 3 cut(s) | 1571, 2321, 2629 |
| MspI | CCGG | 3 cut(s) | 86, 1026, 1218 |
| MspR9I | CCNGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| MunI | CAATTG | 2 cut(s) | 1329, 3046 |
| Mva1269I | GAATGC | 2 cut(s) | 1481, 2268 |
| MvaI | CCWGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| MvnI | CGCG | 2 cut(s) | 1804, 2038 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 749, 758, 1567, 2703, 3025, 3034, 3119 |
| NcoI | CCATGG | 1 cut(s) | 2112 |
| NlaIV | GGNNCC | 9 cut(s) | 475, 1134, 2101, 2245, 2459, 2720, 2721, 3018, 3206 |
| NmuCI | GTSAC | 3 cut(s) | 350, 932, 2499 |
| NsiI | ATGCAT | 3 cut(s) | 58, 101, 3075 |
| NspI | RCATGY | 4 cut(s) | 1489, 1829, 1959, 2656 |
| OliI | CACNNNNGTG | 1 cut(s) | 488 |
| PacI | TTAATTAA | 1 cut(s) | 2136 |
| PaeI | GCATGC | 1 cut(s) | 1959 |
| PaeR7I | CTCGAG | 1 cut(s) | 1038 |
| PciI | ACATGT | 1 cut(s) | 1825 |
| PciSI | GCTCTTC | 2 cut(s) | 696, 771 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1867, 2722 |
| PctI | GAATGC | 2 cut(s) | 1481, 2268 |
| PdmI | GAANNNNTTC | 2 cut(s) | 423, 1740 |
| Pfl23II | CGTACG | 1 cut(s) | 1004 |
| PflFI | GACNNNGTC | 1 cut(s) | 2069 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2421 |
| PkrI | GCNGC | 6 cut(s) | 525, 763, 2626, 2651, 2899, 3115 |
| PleI | GAGTC | 4 cut(s) | 853, 1049, 2795, 3198 |
| PpsI | GAGTC | 4 cut(s) | 853, 1049, 2795, 3198 |
| PpuMI | RGGWCCY | 1 cut(s) | 2458 |
| PscI | ACATGT | 1 cut(s) | 1825 |
| PshBI | ATTAAT | 3 cut(s) | 1127, 2132, 2547 |
| Psp124BI | GAGCTC | 1 cut(s) | 376 |
| Psp5II | RGGWCCY | 1 cut(s) | 2458 |
| Psp6I | CCWGG | 4 cut(s) | 2414, 2529, 2610, 2808 |
| PspEI | GGTNACC | 1 cut(s) | 932 |
| PspFI | CCCAGC | 3 cut(s) | 1188, 1605, 1972 |
| PspGI | CCWGG | 4 cut(s) | 2414, 2529, 2610, 2808 |
| PspLI | CGTACG | 1 cut(s) | 1004 |
| PspN4I | GGNNCC | 9 cut(s) | 475, 1134, 2101, 2245, 2459, 2720, 2721, 3018, 3206 |
| PspOMI | GGGCCC | 1 cut(s) | 2718 |
| PspPI | GGNCC | 9 cut(s) | 332, 1132, 1151, 1297, 2187, 2458, 2718, 2719, 3205 |
| PspPPI | RGGWCCY | 1 cut(s) | 2458 |
| PstI | CTGCAG | 1 cut(s) | 2902 |
| PstNI | CAGNNNCTG | 1 cut(s) | 803 |
| PsuI | RGATCY | 3 cut(s) | 864, 1702, 2054 |
| PsyI | GACNNNGTC | 1 cut(s) | 2069 |
| RsaI | GTAC | 5 cut(s) | 175, 589, 1006, 1830, 2016 |
| RsaNI | GTAC | 5 cut(s) | 174, 588, 1005, 1829, 2015 |
| RseI | CAYNNNNRTG | 1 cut(s) | 488 |
| SacI | GAGCTC | 1 cut(s) | 376 |
| SalI | GTCGAC | 1 cut(s) | 2433 |
| SapI | GCTCTTC | 2 cut(s) | 696, 771 |
| SatI | GCNGC | 6 cut(s) | 524, 762, 2625, 2650, 2898, 3114 |
| Sau96I | GGNCC | 9 cut(s) | 332, 1132, 1151, 1297, 2187, 2458, 2718, 2719, 3205 |
| SchI | GAGTC | 4 cut(s) | 854, 1050, 2795, 3199 |
| ScrFI | CCNGG | 4 cut(s) | 2416, 2531, 2612, 2810 |
| SduI | GDGCHC | 7 cut(s) | 376, 478, 655, 892, 1147, 1249, 2722 |
| SfaNI | GCATC | 5 cut(s) | 39, 43, 553, 3064, 3109 |
| SfcI | CTRYAG | 2 cut(s) | 1662, 2898 |
| Sfr274I | CTCGAG | 1 cut(s) | 1038 |
| SinI | GGWCC | 5 cut(s) | 1132, 1151, 1297, 2458, 3205 |
| SlaI | CTCGAG | 1 cut(s) | 1038 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 488 |
| SmlI | CTYRAG | 5 cut(s) | 1038, 1571, 1983, 2321, 2629 |
| SmoI | CTYRAG | 5 cut(s) | 1038, 1571, 1983, 2321, 2629 |
| SpeI | ACTAGT | 1 cut(s) | 1384 |
| SphI | GCATGC | 1 cut(s) | 1959 |
| SsiI | CCGC | 7 cut(s) | 148, 1706, 1802, 2036, 2074, 2117, 2912 |
| SspI | AATATT | 2 cut(s) | 1229, 1447 |
| SstI | GAGCTC | 1 cut(s) | 376 |
| StyD4I | CCNGG | 4 cut(s) | 2414, 2529, 2610, 2808 |
| StyI | CCWWGG | 6 cut(s) | 335, 554, 1053, 1696, 2112, 3020 |
| TaaI | ACNGT | 4 cut(s) | 283, 882, 1325, 2168 |
| TaiI | ACGT | 2 cut(s) | 908, 2562 |
| TaqI | TCGA | 8 cut(s) | 158, 1039, 1268, 1774, 2224, 2434, 2440, 2725 |
| TatI | WGTACW | 2 cut(s) | 173, 1828 |
| TscAI | CASTG | 4 cut(s) | 449, 1147, 1765, 3044 |
| TseFI | GTSAC | 3 cut(s) | 350, 932, 2499 |
| TseI | GCWGC | 6 cut(s) | 523, 761, 2624, 2649, 2897, 3113 |
| Tsp45I | GTSAC | 3 cut(s) | 350, 932, 2499 |
| TspGWI | ACGGA | 1 cut(s) | 2078 |
| TspRI | CASTG | 4 cut(s) | 449, 1147, 1765, 3044 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2069 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2421 |
| Vha464I | CTTAAG | 3 cut(s) | 1571, 2321, 2629 |
| VneI | GTGCAC | 1 cut(s) | 1245 |
| VpaK11BI | GGWCC | 5 cut(s) | 1132, 1151, 1297, 2458, 3205 |
| VspI | ATTAAT | 3 cut(s) | 1127, 2132, 2547 |
| XceI | RCATGY | 4 cut(s) | 1489, 1829, 1959, 2656 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 141, 2110, 2816 |
| XhoI | CTCGAG | 1 cut(s) | 1038 |
| XmiI | GTMKAC | 1 cut(s) | 2434 |
| XmnI | GAANNNNTTC | 2 cut(s) | 423, 1740 |
| Zsp2I | ATGCAT | 3 cut(s) | 58, 101, 3075 |