ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4073 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 187 |
| AatII | GACGTC | 1 cut(s) | 240 |
| Acc16I | TGCGCA | 1 cut(s) | 1392 |
| AccB1I | GGYRCC | 2 cut(s) | 3400, 4333 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1865, 3068, 3772, 3865 |
| AccI | GTMKAC | 4 cut(s) | 1069, 2169, 3113, 4559 |
| AccII | CGCG | 1 cut(s) | 2208 |
| AccIII | TCCGGA | 2 cut(s) | 394, 3948 |
| AciI | CCGC | 4 cut(s) | 2418, 2787, 4288, 4346 |
| AcoI | YGGCCR | 1 cut(s) | 2419 |
| AcuI | CTGAAG | 5 cut(s) | 327, 1785, 1920, 3108, 3732 |
| AcvI | CACGTG | 1 cut(s) | 4138 |
| AcyI | GRCGYC | 2 cut(s) | 237, 4334 |
| AdeI | CACNNNGTG | 2 cut(s) | 1283, 1865 |
| AfaI | GTAC | 9 cut(s) | 20, 256, 839, 1090, 1258, 2314, 2817, 3465, 4646 |
| AfeI | AGCGCT | 1 cut(s) | 2858 |
| AflII | CTTAAG | 1 cut(s) | 3131 |
| AflIII | ACRYGT | 3 cut(s) | 2206, 3108, 4452 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3181 |
| AjiI | CACGTC | 1 cut(s) | 4455 |
| AjnI | CCWGG | 4 cut(s) | 864, 1248, 2236, 2367 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3048, 3080 |
| Alw21I | GWGCWC | 6 cut(s) | 1279, 2376, 3613, 4137, 4312, 4709 |
| Alw26I | GTCTC | 7 cut(s) | 214, 1005, 1346, 1887, 2649, 3936, 4204 |
| Alw44I | GTGCAC | 1 cut(s) | 3609 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3706, 3755 |
| Ama87I | CYCGRG | 2 cut(s) | 1002, 3711 |
| Aor13HI | TCCGGA | 2 cut(s) | 394, 3948 |
| Aor51HI | AGCGCT | 1 cut(s) | 2858 |
| AoxI | GGCC | 7 cut(s) | 144, 161, 1856, 2419, 2461, 3194, 3615 |
| ApaLI | GTGCAC | 1 cut(s) | 3609 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1406, 1438 |
| AseI | ATTAAT | 1 cut(s) | 561 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2690, 2829 |
| AspA2I | CCTAGG | 1 cut(s) | 3191 |
| AspLEI | GCGC | 4 cut(s) | 1393, 2859, 3347, 4336 |
| AspS9I | GGNCC | 3 cut(s) | 2462, 3071, 3195 |
| AsuC2I | CCSGG | 2 cut(s) | 2492, 3292 |
| AvaI | CYCGRG | 2 cut(s) | 1002, 3711 |
| AvaII | GGWCC | 1 cut(s) | 3071 |
| AvrII | CCTAGG | 1 cut(s) | 3191 |
| BaeGI | GKGCMC | 3 cut(s) | 2088, 3403, 3613 |
| BamHI | GGATCC | 2 cut(s) | 373, 3304 |
| BanI | GGYRCC | 2 cut(s) | 3400, 4333 |
| BanII | GRGCYC | 2 cut(s) | 2376, 4441 |
| BbrPI | CACGTG | 1 cut(s) | 4138 |
| BbsI | GAAGAC | 5 cut(s) | 790, 876, 1947, 4094, 4587 |
| Bbv12I | GWGCWC | 6 cut(s) | 1279, 2376, 3613, 4137, 4312, 4709 |
| BceAI | ACGGC | 3 cut(s) | 273, 2231, 3981 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2115, 2149, 4724, 4758 |
| BciT130I | CCWGG | 4 cut(s) | 866, 1250, 2238, 2369 |
| BclI | TGATCA | 3 cut(s) | 1813, 3097, 3513 |
| BcnI | CCSGG | 2 cut(s) | 2492, 3292 |
| BcoDI | GTCTC | 7 cut(s) | 214, 1005, 1346, 1887, 2649, 3936, 4204 |
| BfmI | CTRYAG | 5 cut(s) | 217, 1070, 2102, 2901, 3027 |
| BfoI | RGCGCY | 3 cut(s) | 2860, 3348, 4337 |
| BfrI | CTTAAG | 1 cut(s) | 3131 |
| BlnI | CCTAGG | 1 cut(s) | 3191 |
| BmcAI | AGTACT | 1 cut(s) | 20 |
| Bme1390I | CCNGG | 6 cut(s) | 866, 1250, 2238, 2369, 2492, 3292 |
| Bme18I | GGWCC | 1 cut(s) | 3071 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3181 |
| BmeT110I | CYCGRG | 2 cut(s) | 1002, 3711 |
| BmgBI | CACGTC | 1 cut(s) | 4455 |
| BmgT120I | GGNCC | 3 cut(s) | 2462, 3071, 3195 |
| BmiI | GGNNCC | 9 cut(s) | 288, 375, 2464, 2680, 3306, 3402, 3843, 3853, 4335 |
| BmrFI | CCNGG | 6 cut(s) | 866, 1250, 2238, 2369, 2492, 3292 |
| BmrI | ACTGGG | 1 cut(s) | 1435 |
| BmuI | ACTGGG | 1 cut(s) | 1435 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1043 |
| BpiI | GAAGAC | 5 cut(s) | 790, 876, 1947, 4094, 4587 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1066, 1098, 3694, 3726 |
| BpmI | CTGGAG | 3 cut(s) | 1931, 2390, 3790 |
| Bpu10I | CCTNAGC | 2 cut(s) | 82, 3992 |
| BpuEI | CTTGAG | 1 cut(s) | 1370 |
| BpuMI | CCSGG | 2 cut(s) | 2492, 3292 |
| BsaAI | YACGTR | 2 cut(s) | 2167, 4138 |
| BsaBI | GATNNNNATC | 3 cut(s) | 898, 3327, 3633 |
| BsaHI | GRCGYC | 2 cut(s) | 237, 4334 |
| BsaI | GGTCTC | 2 cut(s) | 2649, 3936 |
| BsaWI | WCCGGW | 2 cut(s) | 394, 3948 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2260, 2290, 4691, 4721 |
| Bse3DI | GCAATG | 6 cut(s) | 552, 723, 750, 1386, 2131, 4490 |
| Bse8I | GATNNNNATC | 3 cut(s) | 898, 3327, 3633 |
| BseAI | TCCGGA | 2 cut(s) | 394, 3948 |
| BseBI | CCWGG | 4 cut(s) | 866, 1250, 2238, 2369 |
| BseJI | GATNNNNATC | 3 cut(s) | 898, 3327, 3633 |
| BseMI | GCAATG | 6 cut(s) | 552, 723, 750, 1386, 2131, 4490 |
| BseMII | CTCAG | 9 cut(s) | 318, 1515, 2389, 2660, 2721, 2790, 3960, 4541, 4725 |
| BseRI | GAGGAG | 3 cut(s) | 2511, 4666, 4699 |
| BseSI | GKGCMC | 3 cut(s) | 2088, 3403, 3613 |
| BseYI | CCCAGC | 1 cut(s) | 4008 |
| BsgI | GTGCAG | 7 cut(s) | 132, 798, 1334, 1341, 2325, 3338, 4267 |
| Bsh1236I | CGCG | 1 cut(s) | 2208 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4276 |
| BshFI | GGCC | 7 cut(s) | 146, 163, 1858, 2421, 2463, 3196, 3617 |
| BshNI | GGYRCC | 2 cut(s) | 3400, 4333 |
| BsiEI | CGRYCG | 1 cut(s) | 4276 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1279, 2376, 3613, 4137, 4312, 4709 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1002, 3711 |
| BsiSI | CCGG | 5 cut(s) | 395, 2492, 3291, 3845, 3949 |
| BsiWI | CGTACG | 1 cut(s) | 254 |
| BslFI | GGGAC | 2 cut(s) | 4580, 4676 |
| BsmAI | GTCTC | 7 cut(s) | 214, 1005, 1346, 1887, 2649, 3936, 4204 |
| BsmFI | GGGAC | 2 cut(s) | 4580, 4676 |
| BsmI | GAATGC | 1 cut(s) | 1491 |
| BsnI | GGCC | 7 cut(s) | 146, 163, 1858, 2421, 2463, 3196, 3617 |
| Bso31I | GGTCTC | 2 cut(s) | 2649, 3936 |
| BsoBI | CYCGRG | 2 cut(s) | 1002, 3711 |
| Bsp1286I | GDGCHC | 9 cut(s) | 1279, 2088, 2376, 3403, 3613, 4137, 4312, 4441, 4709 |
| Bsp13I | TCCGGA | 2 cut(s) | 394, 3948 |
| Bsp1407I | TGTACA | 3 cut(s) | 1256, 2312, 2815 |
| Bsp19I | CCATGG | 3 cut(s) | 912, 1425, 2466 |
| BspACI | CCGC | 4 cut(s) | 2418, 2787, 4288, 4346 |
| BspANI | GGCC | 7 cut(s) | 146, 163, 1858, 2421, 2463, 3196, 3617 |
| BspCNI | CTCAG | 9 cut(s) | 319, 1516, 2388, 2659, 2722, 2789, 3961, 4542, 4724 |
| BspEI | TCCGGA | 2 cut(s) | 394, 3948 |
| BspFNI | CGCG | 1 cut(s) | 2208 |
| BspLI | GGNNCC | 9 cut(s) | 288, 375, 2464, 2680, 3306, 3402, 3843, 3853, 4335 |
| BspMAI | CTGCAG | 2 cut(s) | 221, 3031 |
| BspQI | GCTCTTC | 1 cut(s) | 4022 |
| BspT107I | GGYRCC | 2 cut(s) | 3400, 4333 |
| BspTI | CTTAAG | 1 cut(s) | 3131 |
| BspTNI | GGTCTC | 2 cut(s) | 2649, 3936 |
| BsrDI | GCAATG | 6 cut(s) | 552, 723, 750, 1386, 2131, 4490 |
| BsrGI | TGTACA | 3 cut(s) | 1256, 2312, 2815 |
| BssNAI | GTATAC | 2 cut(s) | 2170, 4560 |
| BssNI | GRCGYC | 2 cut(s) | 237, 4334 |
| BssT1I | CCWWGG | 6 cut(s) | 848, 912, 1425, 2466, 3191, 3455 |
| Bst1107I | GTATAC | 2 cut(s) | 2170, 4560 |
| Bst2UI | CCWGG | 4 cut(s) | 866, 1250, 2238, 2369 |
| Bst6I | CTCTTC | 5 cut(s) | 1735, 1747, 1845, 2965, 4022 |
| BstACI | GRCGYC | 2 cut(s) | 237, 4334 |
| BstAFI | CTTAAG | 1 cut(s) | 3131 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3535, 4429 |
| BstAUI | TGTACA | 3 cut(s) | 1256, 2312, 2815 |
| BstBAI | YACGTR | 2 cut(s) | 2167, 4138 |
| BstDSI | CCRYGG | 3 cut(s) | 912, 1425, 2466 |
| BstFNI | CGCG | 1 cut(s) | 2208 |
| BstH2I | RGCGCY | 3 cut(s) | 2860, 3348, 4337 |
| BstHHI | GCGC | 4 cut(s) | 1393, 2859, 3347, 4336 |
| BstMAI | GTCTC | 7 cut(s) | 214, 1005, 1346, 1887, 2649, 3936, 4204 |
| BstMCI | CGRYCG | 1 cut(s) | 4276 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 104, 551, 3032, 3535, 4043, 4429, 4751 |
| BstNI | CCWGG | 4 cut(s) | 866, 1250, 2238, 2369 |
| BstNSI | RCATGY | 2 cut(s) | 812, 2145 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1043 |
| BstSCI | CCNGG | 6 cut(s) | 864, 1248, 2236, 2367, 2490, 3290 |
| BstSFI | CTRYAG | 5 cut(s) | 217, 1070, 2102, 2901, 3027 |
| BstSLI | GKGCMC | 3 cut(s) | 2088, 3403, 3613 |
| BstUI | CGCG | 1 cut(s) | 2208 |
| BstV2I | GAAGAC | 5 cut(s) | 790, 876, 1947, 4094, 4587 |
| BstX2I | RGATCY | 6 cut(s) | 373, 617, 1571, 3304, 3436, 3628 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4701 |
| BstYI | RGATCY | 6 cut(s) | 373, 617, 1571, 3304, 3436, 3628 |
| BstZ17I | GTATAC | 2 cut(s) | 2170, 4560 |
| BsuRI | GGCC | 7 cut(s) | 146, 163, 1858, 2421, 2463, 3196, 3617 |
| BtgI | CCRYGG | 3 cut(s) | 912, 1425, 2466 |
| BtrI | CACGTC | 1 cut(s) | 4455 |
| BtsI | GCAGTG | 6 cut(s) | 202, 226, 1148, 1322, 2949, 4693 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3706, 3755 |
| CfoI | GCGC | 4 cut(s) | 1393, 2859, 3347, 4336 |
| Cfr13I | GGNCC | 3 cut(s) | 2462, 3071, 3195 |
| CseI | GACGC | 2 cut(s) | 75, 3558 |
| Csp6I | GTAC | 9 cut(s) | 19, 255, 838, 1089, 1257, 2313, 2816, 3464, 4645 |
| CviQI | GTAC | 9 cut(s) | 19, 255, 838, 1089, 1257, 2313, 2816, 3464, 4645 |
| DinI | GGCGCC | 1 cut(s) | 4335 |
| DraI | TTTAAA | 2 cut(s) | 526, 3006 |
| DraIII | CACNNNGTG | 2 cut(s) | 1283, 1865 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 187 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3181 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 187 |
| EaeI | YGGCCR | 1 cut(s) | 2419 |
| Eam1104I | CTCTTC | 5 cut(s) | 1735, 1747, 1845, 2965, 4022 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3181 |
| EarI | CTCTTC | 5 cut(s) | 1735, 1747, 1845, 2965, 4022 |
| Ecl136II | GAGCTC | 1 cut(s) | 2374 |
| Eco130I | CCWWGG | 6 cut(s) | 848, 912, 1425, 2466, 3191, 3455 |
| Eco24I | GRGCYC | 2 cut(s) | 2376, 4441 |
| Eco31I | GGTCTC | 2 cut(s) | 2649, 3936 |
| Eco47I | GGWCC | 1 cut(s) | 3071 |
| Eco47III | AGCGCT | 1 cut(s) | 2858 |
| Eco53kI | GAGCTC | 1 cut(s) | 2374 |
| Eco57I | CTGAAG | 5 cut(s) | 327, 1785, 1920, 3108, 3732 |
| Eco72I | CACGTG | 1 cut(s) | 4138 |
| Eco88I | CYCGRG | 2 cut(s) | 1002, 3711 |
| EcoICRI | GAGCTC | 1 cut(s) | 2374 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2462 |
| EcoRI | GAATTC | 3 cut(s) | 331, 2932, 3279 |
| EcoRII | CCWGG | 4 cut(s) | 864, 1248, 2236, 2367 |
| EcoT14I | CCWWGG | 6 cut(s) | 848, 912, 1425, 2466, 3191, 3455 |
| EcoT22I | ATGCAT | 2 cut(s) | 752, 1493 |
| EcoT38I | GRGCYC | 2 cut(s) | 2376, 4441 |
| EgeI | GGCGCC | 1 cut(s) | 4335 |
| EheI | GGCGCC | 1 cut(s) | 4335 |
| ErhI | CCWWGG | 6 cut(s) | 848, 912, 1425, 2466, 3191, 3455 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2241, 2273, 3769, 3801, 4601, 4633 |
| FaqI | GGGAC | 2 cut(s) | 4580, 4676 |
| FauI | CCCGC | 2 cut(s) | 4295, 4339 |
| FauNDI | CATATG | 3 cut(s) | 247, 825, 3925 |
| FbaI | TGATCA | 3 cut(s) | 1813, 3097, 3513 |
| FblI | GTMKAC | 4 cut(s) | 1069, 2169, 3113, 4559 |
| FriOI | GRGCYC | 2 cut(s) | 2376, 4441 |
| FspI | TGCGCA | 1 cut(s) | 1392 |
| GlaI | GCGC | 4 cut(s) | 1392, 2858, 3346, 4335 |
| GsaI | CCCAGC | 1 cut(s) | 4012 |
| GsuI | CTGGAG | 3 cut(s) | 1931, 2390, 3790 |
| HaeII | RGCGCY | 3 cut(s) | 2860, 3348, 4337 |
| HaeIII | GGCC | 7 cut(s) | 146, 163, 1858, 2421, 2463, 3196, 3617 |
| HapII | CCGG | 5 cut(s) | 395, 2492, 3291, 3845, 3949 |
| HgaI | GACGC | 2 cut(s) | 75, 3558 |
| HhaI | GCGC | 4 cut(s) | 1393, 2859, 3347, 4336 |
| Hin1I | GRCGYC | 2 cut(s) | 237, 4334 |
| Hin6I | GCGC | 4 cut(s) | 1391, 2857, 3345, 4334 |
| HinP1I | GCGC | 4 cut(s) | 1391, 2857, 3345, 4334 |
| HincII | GTYRAC | 5 cut(s) | 235, 241, 590, 1369, 2761 |
| HindII | GTYRAC | 5 cut(s) | 235, 241, 590, 1369, 2761 |
| HindIII | AAGCTT | 4 cut(s) | 105, 1693, 1902, 2255 |
| HpaI | GTTAAC | 1 cut(s) | 2761 |
| HpaII | CCGG | 5 cut(s) | 395, 2492, 3291, 3845, 3949 |
| Hpy99I | CGWCG | 2 cut(s) | 437, 3574 |
| HpyCH4IV | ACGT | 8 cut(s) | 237, 1180, 2166, 2344, 2599, 3108, 4137, 4454 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 104, 551, 3032, 3535, 4043, 4429, 4751 |
| HpySE526I | ACGT | 8 cut(s) | 237, 1180, 2166, 2344, 2599, 3108, 4137, 4454 |
| Hsp92I | GRCGYC | 2 cut(s) | 237, 4334 |
| HspAI | GCGC | 4 cut(s) | 1391, 2857, 3345, 4334 |
| KasI | GGCGCC | 1 cut(s) | 4333 |
| Kpn2I | TCCGGA | 2 cut(s) | 394, 3948 |
| Ksp22I | TGATCA | 3 cut(s) | 1813, 3097, 3513 |
| KspAI | GTTAAC | 1 cut(s) | 2761 |
| LguI | GCTCTTC | 1 cut(s) | 4022 |
| MaeII | ACGT | 8 cut(s) | 237, 1180, 2166, 2344, 2599, 3108, 4137, 4454 |
| MfeI | CAATTG | 1 cut(s) | 3063 |
| MflI | RGATCY | 6 cut(s) | 373, 617, 1571, 3304, 3436, 3628 |
| MhlI | GDGCHC | 9 cut(s) | 1279, 2088, 2376, 3403, 3613, 4137, 4312, 4441, 4709 |
| MluI | ACGCGT | 1 cut(s) | 2206 |
| Mly113I | GGCGCC | 1 cut(s) | 4334 |
| MmeI | TCCRAC | 7 cut(s) | 237, 595, 1509, 1959, 3552, 3810, 4256 |
| Mph1103I | ATGCAT | 2 cut(s) | 752, 1493 |
| MroI | TCCGGA | 2 cut(s) | 394, 3948 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2690, 2829 |
| MslI | CAYNNNNRTG | 2 cut(s) | 950, 972 |
| MspCI | CTTAAG | 1 cut(s) | 3131 |
| MspI | CCGG | 5 cut(s) | 395, 2492, 3291, 3845, 3949 |
| MspR9I | CCNGG | 6 cut(s) | 866, 1250, 2238, 2369, 2492, 3292 |
| MunI | CAATTG | 1 cut(s) | 3063 |
| Mva1269I | GAATGC | 1 cut(s) | 1491 |
| MvaI | CCWGG | 4 cut(s) | 866, 1250, 2238, 2369 |
| MvnI | CGCG | 1 cut(s) | 2208 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 104, 551, 3032, 3535, 4043, 4429, 4751 |
| NarI | GGCGCC | 1 cut(s) | 4334 |
| NciI | CCSGG | 2 cut(s) | 2492, 3292 |
| NcoI | CCATGG | 3 cut(s) | 912, 1425, 2466 |
| NdeI | CATATG | 3 cut(s) | 247, 825, 3925 |
| NlaIV | GGNNCC | 9 cut(s) | 288, 375, 2464, 2680, 3306, 3402, 3843, 3853, 4335 |
| NmuCI | GTSAC | 6 cut(s) | 943, 1656, 2494, 3795, 3888, 4730 |
| NsbI | TGCGCA | 1 cut(s) | 1392 |
| NsiI | ATGCAT | 2 cut(s) | 752, 1493 |
| NspI | RCATGY | 2 cut(s) | 812, 2145 |
| PaeI | GCATGC | 1 cut(s) | 812 |
| PciSI | GCTCTTC | 1 cut(s) | 4022 |
| PctI | GAATGC | 1 cut(s) | 1491 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2690, 2829 |
| Pfl23II | CGTACG | 1 cut(s) | 254 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1865, 3068, 3772, 3865 |
| PfoI | TCCNGGA | 1 cut(s) | 2367 |
| PluTI | GGCGCC | 1 cut(s) | 4337 |
| PmaCI | CACGTG | 1 cut(s) | 4138 |
| PmlI | CACGTG | 1 cut(s) | 4138 |
| Ppu21I | YACGTR | 2 cut(s) | 2167, 4138 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1043 |
| PshBI | ATTAAT | 1 cut(s) | 561 |
| PsiI | TTATAA | 1 cut(s) | 4073 |
| Psp124BI | GAGCTC | 1 cut(s) | 2376 |
| Psp6I | CCWGG | 4 cut(s) | 864, 1248, 2236, 2367 |
| PspCI | CACGTG | 1 cut(s) | 4138 |
| PspFI | CCCAGC | 1 cut(s) | 4008 |
| PspGI | CCWGG | 4 cut(s) | 864, 1248, 2236, 2367 |
| PspLI | CGTACG | 1 cut(s) | 254 |
| PspN4I | GGNNCC | 9 cut(s) | 288, 375, 2464, 2680, 3306, 3402, 3843, 3853, 4335 |
| PspPI | GGNCC | 3 cut(s) | 2462, 3071, 3195 |
| PstI | CTGCAG | 2 cut(s) | 221, 3031 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3706, 3755 |
| PsuI | RGATCY | 6 cut(s) | 373, 617, 1571, 3304, 3436, 3628 |
| RsaI | GTAC | 9 cut(s) | 20, 256, 839, 1090, 1258, 2314, 2817, 3465, 4646 |
| RsaNI | GTAC | 9 cut(s) | 19, 255, 838, 1089, 1257, 2313, 2816, 3464, 4645 |
| RseI | CAYNNNNRTG | 2 cut(s) | 950, 972 |
| SacI | GAGCTC | 1 cut(s) | 2376 |
| SapI | GCTCTTC | 1 cut(s) | 4022 |
| Sau96I | GGNCC | 3 cut(s) | 2462, 3071, 3195 |
| ScaI | AGTACT | 1 cut(s) | 20 |
| ScrFI | CCNGG | 6 cut(s) | 866, 1250, 2238, 2369, 2492, 3292 |
| SduI | GDGCHC | 9 cut(s) | 1279, 2088, 2376, 3403, 3613, 4137, 4312, 4441, 4709 |
| SfcI | CTRYAG | 5 cut(s) | 217, 1070, 2102, 2901, 3027 |
| SfoI | GGCGCC | 1 cut(s) | 4335 |
| SinI | GGWCC | 1 cut(s) | 3071 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 950, 972 |
| SmlI | CTYRAG | 2 cut(s) | 1349, 3131 |
| SmoI | CTYRAG | 2 cut(s) | 1349, 3131 |
| SphI | GCATGC | 1 cut(s) | 812 |
| SsiI | CCGC | 4 cut(s) | 2418, 2787, 4288, 4346 |
| SspDI | GGCGCC | 1 cut(s) | 4333 |
| SspI | AATATT | 1 cut(s) | 3244 |
| SstI | GAGCTC | 1 cut(s) | 2376 |
| StyD4I | CCNGG | 6 cut(s) | 864, 1248, 2236, 2367, 2490, 3290 |
| StyI | CCWWGG | 6 cut(s) | 848, 912, 1425, 2466, 3191, 3455 |
| TaiI | ACGT | 8 cut(s) | 240, 1183, 2169, 2347, 2602, 3111, 4140, 4457 |
| TaqI | TCGA | 6 cut(s) | 2009, 2272, 2703, 3418, 3940, 4673 |
| TaqII | GACCGA | 1 cut(s) | 4262 |
| TatI | WGTACW | 7 cut(s) | 18, 837, 1088, 1256, 2312, 2815, 4644 |
| TauI | GCSGC | 2 cut(s) | 2421, 2789 |
| TseFI | GTSAC | 6 cut(s) | 943, 1656, 2494, 3795, 3888, 4730 |
| Tsp45I | GTSAC | 6 cut(s) | 943, 1656, 2494, 3795, 3888, 4730 |
| TspGWI | ACGGA | 2 cut(s) | 2738, 3831 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1865, 3068, 3772, 3865 |
| Vha464I | CTTAAG | 1 cut(s) | 3131 |
| VneI | GTGCAC | 1 cut(s) | 3609 |
| VpaK11BI | GGWCC | 1 cut(s) | 3071 |
| VspI | ATTAAT | 1 cut(s) | 561 |
| XceI | RCATGY | 2 cut(s) | 812, 2145 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 872, 1448 |
| XmaJI | CCTAGG | 1 cut(s) | 3191 |
| XmiI | GTMKAC | 4 cut(s) | 1069, 2169, 3113, 4559 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2690, 2829 |
| ZraI | GACGTC | 1 cut(s) | 238 |
| ZrmI | AGTACT | 1 cut(s) | 20 |
| Zsp2I | ATGCAT | 2 cut(s) | 752, 1493 |