Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 194 - 238 | 7.6e-08 | PPR repeat family |
| PPR | PF01535 | 197 - 226 | 2e-09 | PPR repeat |
| PPR_2 | PF13041 | 295 - 342 | 1.3e-08 | PPR repeat family |
| PPR | PF01535 | 298 - 327 | 3e-07 | PPR repeat |
| PPR_2 | PF13041 | 397 - 444 | 1.7e-06 | PPR repeat family |
| PPR | PF01535 | 399 - 427 | 3.2e-06 | PPR repeat |
| PPR_1 | PF12854 | 465 - 493 | 9.5e-06 | PPR repeat |
| E_motif | PF20431 | 514 - 567 | 8.1e-14 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1159 |
| AciI | CCGC | 5 cut(s) | 228, 859, 875, 1559, 1638 |
| AclWI | GGATC | 1 cut(s) | 1437 |
| AcoI | YGGCCR | 1 cut(s) | 645 |
| AcsI | RAATTY | 5 cut(s) | 277, 292, 808, 901, 1189 |
| AfaI | GTAC | 3 cut(s) | 350, 395, 521 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 288, 897, 1298 |
| AflIII | ACRYGT | 1 cut(s) | 1125 |
| AgsI | TTSAA | 4 cut(s) | 739, 821, 944, 1487 |
| AjnI | CCWGG | 2 cut(s) | 1341, 1709 |
| AleI | CACNNNNGTG | 1 cut(s) | 1722 |
| AluBI | AGCT | 5 cut(s) | 198, 205, 250, 1229, 1555 |
| AluI | AGCT | 5 cut(s) | 198, 205, 250, 1229, 1555 |
| Alw21I | GWGCWC | 1 cut(s) | 1231 |
| Alw26I | GTCTC | 3 cut(s) | 111, 129, 1062 |
| AlwI | GGATC | 1 cut(s) | 1437 |
| Ama87I | CYCGRG | 1 cut(s) | 1380 |
| AoxI | GGCC | 4 cut(s) | 136, 238, 645, 1339 |
| ApeKI | GCWGC | 4 cut(s) | 45, 209, 1514, 1714 |
| ApoI | RAATTY | 5 cut(s) | 277, 292, 808, 901, 1189 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1580 |
| AspLEI | GCGC | 2 cut(s) | 1040, 1452 |
| AspS9I | GGNCC | 2 cut(s) | 238, 1303 |
| AsuHPI | GGTGA | 9 cut(s) | 103, 242, 431, 470, 734, 739, 781, 794, 1693 |
| AsuII | TTCGAA | 1 cut(s) | 1584 |
| AvaI | CYCGRG | 1 cut(s) | 1380 |
| AvaII | GGWCC | 1 cut(s) | 1303 |
| AxyI | CCTNAGG | 1 cut(s) | 29 |
| BanII | GRGCYC | 1 cut(s) | 1231 |
| Bbv12I | GWGCWC | 1 cut(s) | 1231 |
| BbvI | GCAGC | 4 cut(s) | 57, 196, 1501, 1701 |
| BccI | CCATC | 5 cut(s) | 680, 724, 863, 1644, 1733 |
| BceAI | ACGGC | 3 cut(s) | 22, 277, 632 |
| BciT130I | CCWGG | 2 cut(s) | 1343, 1711 |
| BcoDI | GTCTC | 3 cut(s) | 111, 129, 1062 |
| BfmI | CTRYAG | 2 cut(s) | 101, 1401 |
| BfoI | RGCGCY | 2 cut(s) | 1041, 1453 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1338 |
| BisI | GCNGC | 5 cut(s) | 46, 210, 1515, 1638, 1715 |
| BlsI | GCNGC | 5 cut(s) | 47, 211, 1516, 1639, 1716 |
| Bme1390I | CCNGG | 2 cut(s) | 1343, 1711 |
| Bme18I | GGWCC | 1 cut(s) | 1303 |
| BmeT110I | CYCGRG | 1 cut(s) | 1380 |
| BmgT120I | GGNCC | 2 cut(s) | 238, 1303 |
| BmiI | GGNNCC | 2 cut(s) | 94, 1304 |
| BmrFI | CCNGG | 2 cut(s) | 1343, 1711 |
| BmsI | GCATC | 2 cut(s) | 412, 925 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1238, 1270 |
| Bpu14I | TTCGAA | 1 cut(s) | 1584 |
| BsaAI | YACGTR | 1 cut(s) | 393 |
| BsaJI | CCNNGG | 2 cut(s) | 426, 1677 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 288, 897, 1298 |
| Bse1I | ACTGG | 1 cut(s) | 222 |
| Bse21I | CCTNAGG | 1 cut(s) | 29 |
| Bse3DI | GCAATG | 4 cut(s) | 92, 325, 508, 522 |
| BseBI | CCWGG | 2 cut(s) | 1343, 1711 |
| BseDI | CCNNGG | 2 cut(s) | 426, 1677 |
| BseGI | GGATG | 2 cut(s) | 63, 1660 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 288, 897, 1298 |
| BseMI | GCAATG | 4 cut(s) | 92, 325, 508, 522 |
| BseMII | CTCAG | 3 cut(s) | 43, 564, 1632 |
| BseNI | ACTGG | 1 cut(s) | 222 |
| BseRI | GAGGAG | 2 cut(s) | 17, 460 |
| BseXI | GCAGC | 4 cut(s) | 57, 196, 1501, 1701 |
| BseYI | CCCAGC | 3 cut(s) | 246, 700, 1496 |
| BsgI | GTGCAG | 3 cut(s) | 1002, 1500, 1700 |
| Bsh1236I | CGCG | 1 cut(s) | 1159 |
| BshFI | GGCC | 4 cut(s) | 138, 240, 647, 1341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1231 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1380 |
| BslFI | GGGAC | 2 cut(s) | 703, 1707 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 288, 897, 1298 |
| BsmAI | GTCTC | 3 cut(s) | 111, 129, 1062 |
| BsmFI | GGGAC | 2 cut(s) | 703, 1707 |
| BsmI | GAATGC | 1 cut(s) | 573 |
| BsnI | GGCC | 4 cut(s) | 138, 240, 647, 1341 |
| BsoBI | CYCGRG | 1 cut(s) | 1380 |
| Bsp119I | TTCGAA | 1 cut(s) | 1584 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1231 |
| Bsp143I | GATC | 3 cut(s) | 35, 1032, 1429 |
| Bsp19I | CCATGG | 1 cut(s) | 1677 |
| BspACI | CCGC | 5 cut(s) | 228, 859, 875, 1559, 1638 |
| BspANI | GGCC | 4 cut(s) | 138, 240, 647, 1341 |
| BspCNI | CTCAG | 3 cut(s) | 42, 565, 1633 |
| BspFNI | CGCG | 1 cut(s) | 1159 |
| BspHI | TCATGA | 2 cut(s) | 297, 1264 |
| BspLI | GGNNCC | 2 cut(s) | 94, 1304 |
| BspPI | GGATC | 1 cut(s) | 1437 |
| BspT104I | TTCGAA | 1 cut(s) | 1584 |
| BsrDI | GCAATG | 4 cut(s) | 92, 325, 508, 522 |
| BsrI | ACTGG | 1 cut(s) | 222 |
| BssECI | CCNNGG | 2 cut(s) | 426, 1677 |
| BssMI | GATC | 3 cut(s) | 35, 1032, 1429 |
| BssT1I | CCWWGG | 2 cut(s) | 426, 1677 |
| Bst2UI | CCWGG | 2 cut(s) | 1343, 1711 |
| Bst4CI | ACNGT | 4 cut(s) | 105, 353, 892, 1405 |
| Bst6I | CTCTTC | 2 cut(s) | 1065, 1239 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 758 |
| BstBAI | YACGTR | 1 cut(s) | 393 |
| BstBI | TTCGAA | 1 cut(s) | 1584 |
| BstC8I | GCNNGC | 6 cut(s) | 207, 316, 1339, 1531, 1535, 1557 |
| BstDEI | CTNAG | 6 cut(s) | 29, 194, 573, 1453, 1641, 1754 |
| BstDSI | CCRYGG | 1 cut(s) | 1677 |
| BstF5I | GGATG | 2 cut(s) | 63, 1660 |
| BstFNI | CGCG | 1 cut(s) | 1159 |
| BstH2I | RGCGCY | 2 cut(s) | 1041, 1453 |
| BstHHI | GCGC | 2 cut(s) | 1040, 1452 |
| BstKTI | GATC | 3 cut(s) | 38, 1035, 1432 |
| BstMAI | GTCTC | 3 cut(s) | 111, 129, 1062 |
| BstMBI | GATC | 3 cut(s) | 35, 1032, 1429 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 218, 512, 758, 1338 |
| BstNI | CCWGG | 2 cut(s) | 1343, 1711 |
| BstNSI | RCATGY | 4 cut(s) | 1057, 1129, 1180, 1329 |
| BstSCI | CCNGG | 2 cut(s) | 1341, 1709 |
| BstSFI | CTRYAG | 2 cut(s) | 101, 1401 |
| BstUI | CGCG | 1 cut(s) | 1159 |
| BstV1I | GCAGC | 4 cut(s) | 57, 196, 1501, 1701 |
| BstX2I | RGATCY | 1 cut(s) | 1429 |
| BstYI | RGATCY | 1 cut(s) | 1429 |
| Bsu36I | CCTNAGG | 1 cut(s) | 29 |
| BsuRI | GGCC | 4 cut(s) | 138, 240, 647, 1341 |
| BtgI | CCRYGG | 1 cut(s) | 1677 |
| BtgZI | GCGATG | 2 cut(s) | 948, 1663 |
| BtsCI | GGATG | 2 cut(s) | 63, 1660 |
| BtsI | GCAGTG | 2 cut(s) | 51, 1507 |
| BtsIMutI | CAGTG | 2 cut(s) | 51, 1507 |
| Cac8I | GCNNGC | 6 cut(s) | 207, 316, 1339, 1531, 1535, 1557 |
| CciI | TCATGA | 2 cut(s) | 297, 1264 |
| CfoI | GCGC | 2 cut(s) | 1040, 1452 |
| Cfr13I | GGNCC | 2 cut(s) | 238, 1303 |
| CseI | GACGC | 1 cut(s) | 1148 |
| Csp6I | GTAC | 3 cut(s) | 349, 394, 520 |
| CviQI | GTAC | 3 cut(s) | 349, 394, 520 |
| DdeI | CTNAG | 6 cut(s) | 29, 194, 573, 1453, 1641, 1754 |
| DpnI | GATC | 3 cut(s) | 37, 1034, 1431 |
| DpnII | GATC | 3 cut(s) | 35, 1032, 1429 |
| EaeI | YGGCCR | 1 cut(s) | 645 |
| Eam1104I | CTCTTC | 2 cut(s) | 1065, 1239 |
| EarI | CTCTTC | 2 cut(s) | 1065, 1239 |
| EciI | GGCGGA | 2 cut(s) | 890, 1574 |
| Ecl136II | GAGCTC | 1 cut(s) | 1229 |
| Eco130I | CCWWGG | 2 cut(s) | 426, 1677 |
| Eco147I | AGGCCT | 1 cut(s) | 1341 |
| Eco24I | GRGCYC | 1 cut(s) | 1231 |
| Eco47I | GGWCC | 1 cut(s) | 1303 |
| Eco53kI | GAGCTC | 1 cut(s) | 1229 |
| Eco81I | CCTNAGG | 1 cut(s) | 29 |
| Eco88I | CYCGRG | 1 cut(s) | 1380 |
| EcoICRI | GAGCTC | 1 cut(s) | 1229 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1303 |
| EcoRI | GAATTC | 1 cut(s) | 901 |
| EcoRII | CCWGG | 2 cut(s) | 1341, 1709 |
| EcoT14I | CCWWGG | 2 cut(s) | 426, 1677 |
| EcoT22I | ATGCAT | 2 cut(s) | 550, 940 |
| EcoT38I | GRGCYC | 1 cut(s) | 1231 |
| ErhI | CCWWGG | 2 cut(s) | 426, 1677 |
| FaqI | GGGAC | 2 cut(s) | 703, 1707 |
| FauNDI | CATATG | 1 cut(s) | 1465 |
| Fnu4HI | GCNGC | 5 cut(s) | 46, 210, 1515, 1638, 1715 |
| FokI | GGATG | 2 cut(s) | 50, 1667 |
| FriOI | GRGCYC | 1 cut(s) | 1231 |
| Fsp4HI | GCNGC | 5 cut(s) | 46, 210, 1515, 1638, 1715 |
| GlaI | GCGC | 2 cut(s) | 1039, 1451 |
| GluI | GCNGC | 5 cut(s) | 46, 210, 1515, 1638, 1715 |
| GsaI | CCCAGC | 3 cut(s) | 250, 704, 1500 |
| HaeII | RGCGCY | 2 cut(s) | 1041, 1453 |
| HaeIII | GGCC | 4 cut(s) | 138, 240, 647, 1341 |
| HgaI | GACGC | 1 cut(s) | 1148 |
| HhaI | GCGC | 2 cut(s) | 1040, 1452 |
| Hin6I | GCGC | 2 cut(s) | 1038, 1450 |
| HinP1I | GCGC | 2 cut(s) | 1038, 1450 |
| HinfI | GANTC | 3 cut(s) | 172, 335, 482 |
| HphI | GGTGA | 9 cut(s) | 103, 242, 431, 470, 734, 739, 781, 794, 1693 |
| Hpy188I | TCNGA | 1 cut(s) | 633 |
| Hpy188III | TCNNGA | 6 cut(s) | 31, 298, 672, 1218, 1265, 1292 |
| Hpy99I | CGWCG | 1 cut(s) | 1164 |
| HpyAV | CCTTC | 5 cut(s) | 82, 292, 742, 971, 1684 |
| HpyCH4III | ACNGT | 4 cut(s) | 105, 353, 892, 1405 |
| HpyCH4IV | ACGT | 1 cut(s) | 392 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 218, 512, 758, 1338 |
| HpyF3I | CTNAG | 6 cut(s) | 29, 194, 573, 1453, 1641, 1754 |
| HpySE526I | ACGT | 1 cut(s) | 392 |
| HspAI | GCGC | 2 cut(s) | 1038, 1450 |
| Kzo9I | GATC | 3 cut(s) | 35, 1032, 1429 |
| LmnI | GCTCC | 3 cut(s) | 92, 203, 1226 |
| Lsp1109I | GCAGC | 4 cut(s) | 57, 196, 1501, 1701 |
| LweI | GCATC | 2 cut(s) | 412, 925 |
| MaeII | ACGT | 1 cut(s) | 392 |
| MaeIII | GTNAC | 6 cut(s) | 160, 308, 997, 1006, 1025, 1610 |
| MalI | GATC | 3 cut(s) | 37, 1034, 1431 |
| MboI | GATC | 3 cut(s) | 35, 1032, 1429 |
| MboII | GAAGA | 6 cut(s) | 167, 631, 1052, 1256, 1424, 1588 |
| MfeI | CAATTG | 1 cut(s) | 1002 |
| MflI | RGATCY | 1 cut(s) | 1429 |
| MhlI | GDGCHC | 1 cut(s) | 1231 |
| MlyI | GAGTC | 1 cut(s) | 491 |
| MmeI | TCCRAC | 1 cut(s) | 312 |
| Mph1103I | ATGCAT | 2 cut(s) | 550, 940 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1580 |
| MseI | TTAA | 7 cut(s) | 273, 408, 677, 950, 1077, 1368, 1476 |
| MslI | CAYNNNNRTG | 2 cut(s) | 762, 1722 |
| MspA1I | CMGCKG | 2 cut(s) | 250, 1640 |
| MspR9I | CCNGG | 2 cut(s) | 1343, 1711 |
| MunI | CAATTG | 1 cut(s) | 1002 |
| Mva1269I | GAATGC | 1 cut(s) | 573 |
| MvaI | CCWGG | 2 cut(s) | 1343, 1711 |
| MvnI | CGCG | 1 cut(s) | 1159 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 218, 512, 758, 1338 |
| NcoI | CCATGG | 1 cut(s) | 1677 |
| NdeI | CATATG | 1 cut(s) | 1465 |
| NdeII | GATC | 3 cut(s) | 35, 1032, 1429 |
| NlaIV | GGNNCC | 2 cut(s) | 94, 1304 |
| NmeAIII | GCCGAG | 1 cut(s) | 1416 |
| NmuCI | GTSAC | 3 cut(s) | 160, 1006, 1025 |
| NsiI | ATGCAT | 2 cut(s) | 550, 940 |
| NspI | RCATGY | 4 cut(s) | 1057, 1129, 1180, 1329 |
| NspV | TTCGAA | 1 cut(s) | 1584 |
| OliI | CACNNNNGTG | 1 cut(s) | 1722 |
| PagI | TCATGA | 2 cut(s) | 297, 1264 |
| PceI | AGGCCT | 1 cut(s) | 1341 |
| PciI | ACATGT | 1 cut(s) | 1125 |
| PctI | GAATGC | 1 cut(s) | 573 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1580 |
| PfeI | GAWTC | 2 cut(s) | 172, 335 |
| PkrI | GCNGC | 5 cut(s) | 47, 211, 1516, 1639, 1716 |
| PleI | GAGTC | 1 cut(s) | 490 |
| PpsI | GAGTC | 1 cut(s) | 490 |
| Ppu21I | YACGTR | 1 cut(s) | 393 |
| PpuMI | RGGWCCY | 1 cut(s) | 1303 |
| PscI | ACATGT | 1 cut(s) | 1125 |
| Psp124BI | GAGCTC | 1 cut(s) | 1231 |
| Psp5II | RGGWCCY | 1 cut(s) | 1303 |
| Psp6I | CCWGG | 2 cut(s) | 1341, 1709 |
| PspFI | CCCAGC | 3 cut(s) | 246, 700, 1496 |
| PspGI | CCWGG | 2 cut(s) | 1341, 1709 |
| PspN4I | GGNNCC | 2 cut(s) | 94, 1304 |
| PspPI | GGNCC | 2 cut(s) | 238, 1303 |
| PspPPI | RGGWCCY | 1 cut(s) | 1303 |
| PsuI | RGATCY | 1 cut(s) | 1429 |
| PvuII | CAGCTG | 1 cut(s) | 250 |
| RsaI | GTAC | 3 cut(s) | 350, 395, 521 |
| RsaNI | GTAC | 3 cut(s) | 349, 394, 520 |
| RseI | CAYNNNNRTG | 2 cut(s) | 762, 1722 |
| SacI | GAGCTC | 1 cut(s) | 1231 |
| SaqAI | TTAA | 7 cut(s) | 273, 408, 677, 950, 1077, 1368, 1476 |
| SatI | GCNGC | 5 cut(s) | 46, 210, 1515, 1638, 1715 |
| Sau3AI | GATC | 3 cut(s) | 35, 1032, 1429 |
| Sau96I | GGNCC | 2 cut(s) | 238, 1303 |
| SchI | GAGTC | 1 cut(s) | 491 |
| ScrFI | CCNGG | 2 cut(s) | 1343, 1711 |
| SduI | GDGCHC | 1 cut(s) | 1231 |
| SfaNI | GCATC | 2 cut(s) | 412, 925 |
| SfcI | CTRYAG | 2 cut(s) | 101, 1401 |
| SfuI | TTCGAA | 1 cut(s) | 1584 |
| SinI | GGWCC | 1 cut(s) | 1303 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 762, 1722 |
| SseBI | AGGCCT | 1 cut(s) | 1341 |
| SsiI | CCGC | 5 cut(s) | 228, 859, 875, 1559, 1638 |
| SstI | GAGCTC | 1 cut(s) | 1231 |
| StuI | AGGCCT | 1 cut(s) | 1341 |
| StyD4I | CCNGG | 2 cut(s) | 1341, 1709 |
| StyI | CCWWGG | 2 cut(s) | 426, 1677 |
| TaaI | ACNGT | 4 cut(s) | 105, 353, 892, 1405 |
| TaiI | ACGT | 1 cut(s) | 395 |
| TaqI | TCGA | 6 cut(s) | 338, 485, 561, 854, 964, 1584 |
| TatI | WGTACW | 1 cut(s) | 519 |
| TauI | GCSGC | 1 cut(s) | 1640 |
| TfiI | GAWTC | 2 cut(s) | 172, 335 |
| Tru1I | TTAA | 7 cut(s) | 273, 408, 677, 950, 1077, 1368, 1476 |
| Tru9I | TTAA | 7 cut(s) | 273, 408, 677, 950, 1077, 1368, 1476 |
| TscAI | CASTG | 2 cut(s) | 58, 1507 |
| TseFI | GTSAC | 3 cut(s) | 160, 1006, 1025 |
| TseI | GCWGC | 4 cut(s) | 45, 209, 1514, 1714 |
| Tsp45I | GTSAC | 3 cut(s) | 160, 1006, 1025 |
| TspRI | CASTG | 2 cut(s) | 58, 1507 |
| VpaK11BI | GGWCC | 1 cut(s) | 1303 |
| XapI | RAATTY | 5 cut(s) | 277, 292, 808, 901, 1189 |
| XceI | RCATGY | 4 cut(s) | 1057, 1129, 1180, 1329 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1189 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1580 |
| Zsp2I | ATGCAT | 2 cut(s) | 550, 940 |