ribonuclease H protein At1g65750-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 72 - 120 | 4e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 573 |
| AciI | CCGC | 4 cut(s) | 110, 148, 215, 381 |
| AcoI | YGGCCR | 1 cut(s) | 482 |
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AfaI | GTAC | 1 cut(s) | 374 |
| AgsI | TTSAA | 3 cut(s) | 58, 155, 323 |
| AjnI | CCWGG | 1 cut(s) | 376 |
| AluBI | AGCT | 4 cut(s) | 173, 239, 245, 259 |
| AluI | AGCT | 4 cut(s) | 173, 239, 245, 259 |
| Alw21I | GWGCWC | 1 cut(s) | 261 |
| Ama87I | CYCGRG | 1 cut(s) | 219 |
| AoxI | GGCC | 2 cut(s) | 114, 482 |
| AspS9I | GGNCC | 1 cut(s) | 224 |
| AvaI | CYCGRG | 1 cut(s) | 219 |
| AvaII | GGWCC | 1 cut(s) | 224 |
| BalI | TGGCCA | 1 cut(s) | 484 |
| BanII | GRGCYC | 1 cut(s) | 261 |
| BbsI | GAAGAC | 1 cut(s) | 13 |
| Bbv12I | GWGCWC | 1 cut(s) | 261 |
| BccI | CCATC | 1 cut(s) | 203 |
| BciT130I | CCWGG | 1 cut(s) | 378 |
| BfaI | CTAG | 1 cut(s) | 135 |
| BisI | GCNGC | 1 cut(s) | 216 |
| BlpI | GCTNAGC | 1 cut(s) | 235 |
| BlsI | GCNGC | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 378 |
| Bme18I | GGWCC | 1 cut(s) | 224 |
| BmeT110I | CYCGRG | 1 cut(s) | 219 |
| BmgT120I | GGNCC | 1 cut(s) | 224 |
| BmiI | GGNNCC | 1 cut(s) | 225 |
| BmrFI | CCNGG | 1 cut(s) | 378 |
| BmsI | GCATC | 1 cut(s) | 528 |
| BpiI | GAAGAC | 1 cut(s) | 13 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 235 |
| BpuEI | CTTGAG | 1 cut(s) | 439 |
| BsaJI | CCNNGG | 1 cut(s) | 376 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 390, 420 |
| Bse3DI | GCAATG | 3 cut(s) | 143, 520, 548 |
| BseBI | CCWGG | 1 cut(s) | 378 |
| BseDI | CCNNGG | 1 cut(s) | 376 |
| BseGI | GGATG | 1 cut(s) | 214 |
| BseMI | GCAATG | 3 cut(s) | 143, 520, 548 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseRI | GAGGAG | 2 cut(s) | 351, 354 |
| BshFI | GGCC | 2 cut(s) | 116, 484 |
| BsiHKAI | GWGCWC | 1 cut(s) | 261 |
| BsiHKCI | CYCGRG | 1 cut(s) | 219 |
| BsnI | GGCC | 2 cut(s) | 116, 484 |
| BsoBI | CYCGRG | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 1 cut(s) | 261 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 235 |
| BspACI | CCGC | 4 cut(s) | 110, 148, 215, 381 |
| BspANI | GGCC | 2 cut(s) | 116, 484 |
| BspCNI | CTCAG | 1 cut(s) | 344 |
| BspLI | GGNNCC | 1 cut(s) | 225 |
| BspQI | GCTCTTC | 1 cut(s) | 419 |
| BsrDI | GCAATG | 3 cut(s) | 143, 520, 548 |
| BssECI | CCNNGG | 1 cut(s) | 376 |
| Bst2UI | CCWGG | 1 cut(s) | 378 |
| Bst4CI | ACNGT | 1 cut(s) | 163 |
| Bst6I | CTCTTC | 1 cut(s) | 419 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 547 |
| BstC8I | GCNNGC | 1 cut(s) | 132 |
| BstDEI | CTNAG | 2 cut(s) | 235, 331 |
| BstF5I | GGATG | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 140, 251, 547 |
| BstNI | CCWGG | 1 cut(s) | 378 |
| BstNSI | RCATGY | 2 cut(s) | 72, 134 |
| BstSCI | CCNGG | 1 cut(s) | 376 |
| BstV2I | GAAGAC | 1 cut(s) | 13 |
| BsuRI | GGCC | 2 cut(s) | 116, 484 |
| BtsCI | GGATG | 1 cut(s) | 214 |
| Cac8I | GCNNGC | 1 cut(s) | 132 |
| Cfr13I | GGNCC | 1 cut(s) | 224 |
| Csp6I | GTAC | 1 cut(s) | 373 |
| CviAII | CATG | 4 cut(s) | 69, 131, 275, 409 |
| CviQI | GTAC | 1 cut(s) | 373 |
| DdeI | CTNAG | 2 cut(s) | 235, 331 |
| EaeI | YGGCCR | 1 cut(s) | 482 |
| Eam1104I | CTCTTC | 1 cut(s) | 419 |
| EarI | CTCTTC | 1 cut(s) | 419 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| Eco24I | GRGCYC | 1 cut(s) | 261 |
| Eco47I | GGWCC | 1 cut(s) | 224 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| Eco88I | CYCGRG | 1 cut(s) | 219 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoRII | CCWGG | 1 cut(s) | 376 |
| EcoT38I | GRGCYC | 1 cut(s) | 261 |
| FaeI | CATG | 4 cut(s) | 72, 134, 278, 412 |
| FaiI | YATR | 8 cut(s) | 70, 120, 132, 276, 410, 446, 452, 554 |
| FatI | CATG | 4 cut(s) | 68, 130, 274, 408 |
| FblI | GTMKAC | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 1 cut(s) | 216 |
| FokI | GGATG | 1 cut(s) | 221 |
| FriOI | GRGCYC | 1 cut(s) | 261 |
| Fsp4HI | GCNGC | 1 cut(s) | 216 |
| FspBI | CTAG | 1 cut(s) | 135 |
| GluI | GCNGC | 1 cut(s) | 216 |
| HaeIII | GGCC | 2 cut(s) | 116, 484 |
| Hin1II | CATG | 4 cut(s) | 72, 134, 278, 412 |
| HinfI | GANTC | 2 cut(s) | 329, 523 |
| Hpy166II | GTNNAC | 1 cut(s) | 574 |
| Hpy188I | TCNGA | 1 cut(s) | 493 |
| Hpy188III | TCNNGA | 2 cut(s) | 248, 418 |
| Hpy8I | GTNNAC | 1 cut(s) | 574 |
| HpyAV | CCTTC | 2 cut(s) | 292, 451 |
| HpyCH4III | ACNGT | 1 cut(s) | 163 |
| HpyCH4V | TGCA | 4 cut(s) | 122, 266, 513, 541 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 140, 251, 547 |
| HpyF3I | CTNAG | 2 cut(s) | 235, 331 |
| Hsp92II | CATG | 4 cut(s) | 72, 134, 278, 412 |
| LguI | GCTCTTC | 1 cut(s) | 419 |
| LmnI | GCTCC | 3 cut(s) | 77, 194, 264 |
| LpnPI | CCDG | 6 cut(s) | 2, 233, 289, 363, 390, 590 |
| LweI | GCATC | 1 cut(s) | 528 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 326 |
| MboII | GAAGA | 3 cut(s) | 13, 348, 406 |
| MhlI | GDGCHC | 1 cut(s) | 261 |
| MlsI | TGGCCA | 1 cut(s) | 484 |
| MluCI | AATT | 6 cut(s) | 60, 77, 83, 342, 402, 508 |
| MluNI | TGGCCA | 1 cut(s) | 484 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MnlI | CCTC | 4 cut(s) | 46, 288, 372, 375 |
| Mox20I | TGGCCA | 1 cut(s) | 484 |
| MscI | TGGCCA | 1 cut(s) | 484 |
| MseI | TTAA | 2 cut(s) | 201, 594 |
| MslI | CAYNNNNRTG | 1 cut(s) | 536 |
| Msp20I | TGGCCA | 1 cut(s) | 484 |
| MspA1I | CMGCKG | 1 cut(s) | 173 |
| MspR9I | CCNGG | 1 cut(s) | 378 |
| MvaI | CCWGG | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 140, 251, 547 |
| NlaIII | CATG | 4 cut(s) | 72, 134, 278, 412 |
| NlaIV | GGNNCC | 1 cut(s) | 225 |
| NmuCI | GTSAC | 1 cut(s) | 326 |
| NspI | RCATGY | 2 cut(s) | 72, 134 |
| PaeI | GCATGC | 1 cut(s) | 134 |
| PciSI | GCTCTTC | 1 cut(s) | 419 |
| PfeI | GAWTC | 1 cut(s) | 523 |
| PkrI | GCNGC | 1 cut(s) | 217 |
| PleI | GAGTC | 1 cut(s) | 323 |
| PpsI | GAGTC | 1 cut(s) | 323 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| Psp6I | CCWGG | 1 cut(s) | 376 |
| PspGI | CCWGG | 1 cut(s) | 376 |
| PspN4I | GGNNCC | 1 cut(s) | 225 |
| PspPI | GGNCC | 1 cut(s) | 224 |
| PvuII | CAGCTG | 1 cut(s) | 173 |
| RsaI | GTAC | 1 cut(s) | 374 |
| RsaNI | GTAC | 1 cut(s) | 373 |
| RseI | CAYNNNNRTG | 1 cut(s) | 536 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SapI | GCTCTTC | 1 cut(s) | 419 |
| SaqAI | TTAA | 2 cut(s) | 201, 594 |
| SatI | GCNGC | 1 cut(s) | 216 |
| Sau96I | GGNCC | 1 cut(s) | 224 |
| SchI | GAGTC | 1 cut(s) | 323 |
| ScrFI | CCNGG | 1 cut(s) | 378 |
| SduI | GDGCHC | 1 cut(s) | 261 |
| SetI | ASST | 8 cut(s) | 38, 175, 241, 247, 261, 434, 462, 566 |
| SfaNI | GCATC | 1 cut(s) | 528 |
| SinI | GGWCC | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 536 |
| SmlI | CTYRAG | 1 cut(s) | 418 |
| SmoI | CTYRAG | 1 cut(s) | 418 |
| SphI | GCATGC | 1 cut(s) | 134 |
| Sse9I | AATT | 6 cut(s) | 60, 77, 83, 342, 402, 508 |
| SsiI | CCGC | 4 cut(s) | 110, 148, 215, 381 |
| SspMI | CTAG | 1 cut(s) | 135 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StyD4I | CCNGG | 1 cut(s) | 376 |
| TaaI | ACNGT | 1 cut(s) | 163 |
| TaqI | TCGA | 2 cut(s) | 32, 38 |
| TasI | AATT | 6 cut(s) | 60, 77, 83, 342, 402, 508 |
| TauI | GCSGC | 1 cut(s) | 218 |
| TfiI | GAWTC | 1 cut(s) | 523 |
| Tru1I | TTAA | 2 cut(s) | 201, 594 |
| Tru9I | TTAA | 2 cut(s) | 201, 594 |
| TseFI | GTSAC | 1 cut(s) | 326 |
| Tsp45I | GTSAC | 1 cut(s) | 326 |
| TspGWI | ACGGA | 3 cut(s) | 169, 181, 221 |
| VpaK11BI | GGWCC | 1 cut(s) | 224 |
| XceI | RCATGY | 2 cut(s) | 72, 134 |
| XmiI | GTMKAC | 1 cut(s) | 573 |
| XspI | CTAG | 1 cut(s) | 135 |