Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Iso_dh | PF00180 | 20 - 126 | 4.7e-13 | Isocitrate/isopropylmalate dehydrogenase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 16, 64 |
| AccI | GTMKAC | 2 cut(s) | 24, 252 |
| AciI | CCGC | 2 cut(s) | 117, 138 |
| AclWI | GGATC | 1 cut(s) | 386 |
| AcyI | GRCGYC | 2 cut(s) | 17, 128 |
| AfaI | GTAC | 2 cut(s) | 38, 290 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 370 |
| AgsI | TTSAA | 4 cut(s) | 217, 329, 428, 490 |
| AjnI | CCWGG | 2 cut(s) | 316, 363 |
| AluBI | AGCT | 2 cut(s) | 150, 166 |
| AluI | AGCT | 2 cut(s) | 150, 166 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| AlwI | GGATC | 1 cut(s) | 386 |
| Ama87I | CYCGRG | 2 cut(s) | 292, 299 |
| ApeKI | GCWGC | 4 cut(s) | 141, 163, 455, 499 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AsuHPI | GGTGA | 3 cut(s) | 37, 88, 296 |
| AvaI | CYCGRG | 2 cut(s) | 292, 299 |
| BanI | GGYRCC | 2 cut(s) | 16, 64 |
| BanII | GRGCYC | 1 cut(s) | 300 |
| BauI | CACGAG | 1 cut(s) | 305 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BbvI | GCAGC | 4 cut(s) | 153, 175, 442, 511 |
| BccI | CCATC | 2 cut(s) | 127, 339 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BciT130I | CCWGG | 2 cut(s) | 318, 365 |
| BclI | TGATCA | 1 cut(s) | 264 |
| BfaI | CTAG | 3 cut(s) | 260, 386, 392 |
| BfmI | CTRYAG | 1 cut(s) | 459 |
| BfoI | RGCGCY | 1 cut(s) | 20 |
| BglII | AGATCT | 2 cut(s) | 175, 449 |
| BisI | GCNGC | 5 cut(s) | 139, 142, 164, 456, 500 |
| BlsI | GCNGC | 5 cut(s) | 140, 143, 165, 457, 501 |
| BmcAI | AGTACT | 1 cut(s) | 290 |
| Bme1390I | CCNGG | 2 cut(s) | 318, 365 |
| BmeT110I | CYCGRG | 2 cut(s) | 292, 299 |
| BmiI | GGNNCC | 2 cut(s) | 18, 66 |
| BmrFI | CCNGG | 2 cut(s) | 318, 365 |
| BpmI | CTGGAG | 1 cut(s) | 339 |
| BsaBI | GATNNNNATC | 2 cut(s) | 180, 186 |
| BsaHI | GRCGYC | 2 cut(s) | 17, 128 |
| BsaJI | CCNNGG | 2 cut(s) | 59, 279 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 370 |
| Bse118I | RCCGGY | 2 cut(s) | 19, 47 |
| Bse8I | GATNNNNATC | 2 cut(s) | 180, 186 |
| BseBI | CCWGG | 2 cut(s) | 318, 365 |
| BseDI | CCNNGG | 2 cut(s) | 59, 279 |
| BseJI | GATNNNNATC | 2 cut(s) | 180, 186 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 370 |
| BseMII | CTCAG | 2 cut(s) | 413, 486 |
| BseRI | GAGGAG | 1 cut(s) | 86 |
| BseXI | GCAGC | 4 cut(s) | 153, 175, 442, 511 |
| BshNI | GGYRCC | 2 cut(s) | 16, 64 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BsiHKCI | CYCGRG | 2 cut(s) | 292, 299 |
| BsiSI | CCGG | 4 cut(s) | 20, 48, 68, 169 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 370 |
| BsoBI | CYCGRG | 2 cut(s) | 292, 299 |
| Bsp1286I | GDGCHC | 2 cut(s) | 300, 306 |
| Bsp143I | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| BspACI | CCGC | 2 cut(s) | 117, 138 |
| BspCNI | CTCAG | 2 cut(s) | 412, 487 |
| BspLI | GGNNCC | 2 cut(s) | 18, 66 |
| BspPI | GGATC | 1 cut(s) | 386 |
| BspT107I | GGYRCC | 2 cut(s) | 16, 64 |
| BsrFI | RCCGGY | 2 cut(s) | 19, 47 |
| BssAI | RCCGGY | 2 cut(s) | 19, 47 |
| BssECI | CCNNGG | 2 cut(s) | 59, 279 |
| BssMI | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| BssNI | GRCGYC | 2 cut(s) | 17, 128 |
| BssSI | CACGAG | 1 cut(s) | 305 |
| Bst2BI | CACGAG | 1 cut(s) | 305 |
| Bst2UI | CCWGG | 2 cut(s) | 318, 365 |
| BstACI | GRCGYC | 2 cut(s) | 17, 128 |
| BstC8I | GCNNGC | 4 cut(s) | 15, 119, 123, 152 |
| BstDEI | CTNAG | 2 cut(s) | 399, 495 |
| BstH2I | RGCGCY | 1 cut(s) | 20 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 7 cut(s) | 90, 178, 184, 190, 267, 381, 452 |
| BstMBI | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 14, 64, 127, 147, 160, 169 |
| BstNI | CCWGG | 2 cut(s) | 318, 365 |
| BstNSI | RCATGY | 2 cut(s) | 58, 163 |
| BstSCI | CCNGG | 2 cut(s) | 316, 363 |
| BstSFI | CTRYAG | 1 cut(s) | 459 |
| BstV1I | GCAGC | 4 cut(s) | 153, 175, 442, 511 |
| BstX2I | RGATCY | 2 cut(s) | 175, 449 |
| BstYI | RGATCY | 2 cut(s) | 175, 449 |
| BtgZI | GCGATG | 1 cut(s) | 23 |
| Cac8I | GCNNGC | 4 cut(s) | 15, 119, 123, 152 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr10I | RCCGGY | 2 cut(s) | 19, 47 |
| CseI | GACGC | 1 cut(s) | 136 |
| CsiI | ACCWGGT | 1 cut(s) | 363 |
| Csp6I | GTAC | 2 cut(s) | 37, 289 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 205, 240 |
| CviAII | CATG | 4 cut(s) | 55, 160, 242, 518 |
| CviJI | RGCY | 8 cut(s) | 121, 150, 166, 228, 298, 333, 349, 395 |
| CviKI_1 | RGCY | 8 cut(s) | 121, 150, 166, 228, 298, 333, 349, 395 |
| CviQI | GTAC | 2 cut(s) | 37, 289 |
| DdeI | CTNAG | 2 cut(s) | 399, 495 |
| DinI | GGCGCC | 1 cut(s) | 18 |
| DpnI | GATC | 7 cut(s) | 89, 177, 183, 189, 266, 380, 451 |
| DpnII | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| Eco24I | GRGCYC | 1 cut(s) | 300 |
| Eco88I | CYCGRG | 2 cut(s) | 292, 299 |
| EcoRII | CCWGG | 2 cut(s) | 316, 363 |
| EcoT38I | GRGCYC | 1 cut(s) | 300 |
| EgeI | GGCGCC | 1 cut(s) | 18 |
| EheI | GGCGCC | 1 cut(s) | 18 |
| FaeI | CATG | 4 cut(s) | 58, 163, 245, 521 |
| FatI | CATG | 4 cut(s) | 54, 159, 241, 517 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FbaI | TGATCA | 1 cut(s) | 264 |
| FblI | GTMKAC | 2 cut(s) | 24, 252 |
| Fnu4HI | GCNGC | 5 cut(s) | 139, 142, 164, 456, 500 |
| FriOI | GRGCYC | 1 cut(s) | 300 |
| Fsp4HI | GCNGC | 5 cut(s) | 139, 142, 164, 456, 500 |
| FspBI | CTAG | 3 cut(s) | 260, 386, 392 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 5 cut(s) | 139, 142, 164, 456, 500 |
| GsuI | CTGGAG | 1 cut(s) | 339 |
| HaeII | RGCGCY | 1 cut(s) | 20 |
| HapII | CCGG | 4 cut(s) | 20, 48, 68, 169 |
| HgaI | GACGC | 1 cut(s) | 136 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1I | GRCGYC | 2 cut(s) | 17, 128 |
| Hin1II | CATG | 4 cut(s) | 58, 163, 245, 521 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HincII | GTYRAC | 2 cut(s) | 208, 253 |
| HindII | GTYRAC | 2 cut(s) | 208, 253 |
| HinfI | GANTC | 2 cut(s) | 83, 313 |
| HpaII | CCGG | 4 cut(s) | 20, 48, 68, 169 |
| HphI | GGTGA | 3 cut(s) | 37, 88, 296 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 208, 253 |
| Hpy188I | TCNGA | 2 cut(s) | 111, 361 |
| Hpy188III | TCNNGA | 4 cut(s) | 31, 91, 179, 185 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 208, 253 |
| Hpy99I | CGWCG | 2 cut(s) | 130, 254 |
| HpyAV | CCTTC | 1 cut(s) | 460 |
| HpyCH4IV | ACGT | 1 cut(s) | 249 |
| HpyCH4V | TGCA | 2 cut(s) | 13, 163 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 14, 64, 127, 147, 160, 169 |
| HpyF3I | CTNAG | 2 cut(s) | 399, 495 |
| HpySE526I | ACGT | 1 cut(s) | 249 |
| Hsp92I | GRCGYC | 2 cut(s) | 17, 128 |
| Hsp92II | CATG | 4 cut(s) | 58, 163, 245, 521 |
| HspAI | GCGC | 1 cut(s) | 17 |
| KasI | GGCGCC | 1 cut(s) | 16 |
| Ksp22I | TGATCA | 1 cut(s) | 264 |
| Kzo9I | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| LmnI | GCTCC | 1 cut(s) | 171 |
| Lsp1109I | GCAGC | 4 cut(s) | 153, 175, 442, 511 |
| MabI | ACCWGGT | 1 cut(s) | 363 |
| MaeI | CTAG | 3 cut(s) | 260, 386, 392 |
| MaeII | ACGT | 1 cut(s) | 249 |
| MaeIII | GTNAC | 2 cut(s) | 43, 482 |
| MalI | GATC | 7 cut(s) | 89, 177, 183, 189, 266, 380, 451 |
| MboI | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| MboII | GAAGA | 2 cut(s) | 459, 485 |
| MflI | RGATCY | 2 cut(s) | 175, 449 |
| MhlI | GDGCHC | 2 cut(s) | 300, 306 |
| Mly113I | GGCGCC | 1 cut(s) | 17 |
| MlyI | GAGTC | 1 cut(s) | 92 |
| MnlI | CCTC | 6 cut(s) | 54, 64, 67, 274, 406, 447 |
| MseI | TTAA | 1 cut(s) | 336 |
| MslI | CAYNNNNRTG | 1 cut(s) | 260 |
| MspI | CCGG | 4 cut(s) | 20, 48, 68, 169 |
| MspR9I | CCNGG | 2 cut(s) | 318, 365 |
| MvaI | CCWGG | 2 cut(s) | 318, 365 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 14, 64, 127, 147, 160, 169 |
| NarI | GGCGCC | 1 cut(s) | 17 |
| NdeII | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| NlaIII | CATG | 4 cut(s) | 58, 163, 245, 521 |
| NlaIV | GGNNCC | 2 cut(s) | 18, 66 |
| NmeAIII | GCCGAG | 1 cut(s) | 84 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| NspI | RCATGY | 2 cut(s) | 58, 163 |
| PaeR7I | CTCGAG | 1 cut(s) | 299 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 36 |
| PfeI | GAWTC | 1 cut(s) | 313 |
| PfoI | TCCNGGA | 1 cut(s) | 316 |
| PkrI | GCNGC | 5 cut(s) | 140, 143, 165, 457, 501 |
| PleI | GAGTC | 1 cut(s) | 91 |
| PluTI | GGCGCC | 1 cut(s) | 20 |
| PpsI | GAGTC | 1 cut(s) | 91 |
| Psp6I | CCWGG | 2 cut(s) | 316, 363 |
| PspGI | CCWGG | 2 cut(s) | 316, 363 |
| PspN4I | GGNNCC | 2 cut(s) | 18, 66 |
| PspXI | VCTCGAGB | 1 cut(s) | 299 |
| PsuI | RGATCY | 2 cut(s) | 175, 449 |
| RsaI | GTAC | 2 cut(s) | 38, 290 |
| RsaNI | GTAC | 2 cut(s) | 37, 289 |
| RseI | CAYNNNNRTG | 1 cut(s) | 260 |
| SalI | GTCGAC | 1 cut(s) | 251 |
| SaqAI | TTAA | 1 cut(s) | 336 |
| SatI | GCNGC | 5 cut(s) | 139, 142, 164, 456, 500 |
| Sau3AI | GATC | 7 cut(s) | 87, 175, 181, 187, 264, 378, 449 |
| ScaI | AGTACT | 1 cut(s) | 290 |
| SchI | GAGTC | 1 cut(s) | 92 |
| ScrFI | CCNGG | 2 cut(s) | 318, 365 |
| SduI | GDGCHC | 2 cut(s) | 300, 306 |
| SetI | ASST | 8 cut(s) | 78, 152, 168, 252, 369, 391, 471, 484 |
| SexAI | ACCWGGT | 1 cut(s) | 363 |
| SfcI | CTRYAG | 1 cut(s) | 459 |
| SfoI | GGCGCC | 1 cut(s) | 18 |
| Sfr274I | CTCGAG | 1 cut(s) | 299 |
| SgrAI | CRCCGGYG | 1 cut(s) | 47 |
| SlaI | CTCGAG | 1 cut(s) | 299 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 260 |
| SmlI | CTYRAG | 1 cut(s) | 299 |
| SmoI | CTYRAG | 1 cut(s) | 299 |
| SsiI | CCGC | 2 cut(s) | 117, 138 |
| SspDI | GGCGCC | 1 cut(s) | 16 |
| SspMI | CTAG | 3 cut(s) | 260, 386, 392 |
| StyD4I | CCNGG | 2 cut(s) | 316, 363 |
| TaiI | ACGT | 1 cut(s) | 252 |
| TaqI | TCGA | 6 cut(s) | 30, 86, 180, 186, 252, 300 |
| TatI | WGTACW | 1 cut(s) | 288 |
| TauI | GCSGC | 1 cut(s) | 141 |
| TfiI | GAWTC | 1 cut(s) | 313 |
| Tru1I | TTAA | 1 cut(s) | 336 |
| Tru9I | TTAA | 1 cut(s) | 336 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| TseI | GCWGC | 4 cut(s) | 141, 163, 455, 499 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| XceI | RCATGY | 2 cut(s) | 58, 163 |
| XhoI | CTCGAG | 1 cut(s) | 299 |
| XmiI | GTMKAC | 2 cut(s) | 24, 252 |
| XspI | CTAG | 3 cut(s) | 260, 386, 392 |
| ZrmI | AGTACT | 1 cut(s) | 290 |